Wall clock time and date at job start Sun Mar 29 2020 21:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 109.46980 * 2 1 4 4 C 1.46901 * 111.00316 * 288.17246 * 3 2 1 5 5 C 1.50694 * 109.47008 * 160.35985 * 4 3 2 6 6 H 1.08003 * 120.00330 * 4.89492 * 5 4 3 7 7 C 1.37878 * 120.00079 * 184.89592 * 5 4 3 8 8 N 1.31515 * 120.00462 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99680 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47707 * 90.00067 * 9 7 5 11 11 H 1.48506 * 109.46940 * 209.99933 * 9 7 5 12 12 H 1.48502 * 109.47303 * 329.99447 * 9 7 5 13 13 C 1.46896 * 110.99893 * 164.21570 * 3 2 1 14 14 C 1.50697 * 109.47637 * 293.95827 * 13 3 2 15 15 C 1.40071 * 120.23892 * 89.99352 * 14 13 3 16 16 N 1.31389 * 120.24748 * 180.02562 * 15 14 13 17 17 C 1.34332 * 120.77860 * 0.02562 * 16 15 14 18 18 N 1.31437 * 119.77170 * 179.97438 * 17 16 15 19 19 N 1.37501 * 120.46094 * 0.27606 * 17 16 15 20 20 H 0.97003 * 120.13228 * 179.72508 * 19 17 16 21 21 C 1.35721 * 120.23785 * 270.02555 * 14 13 3 22 22 H 1.09002 * 109.46673 * 299.60181 * 1 2 3 23 23 H 1.08998 * 109.47412 * 59.60660 * 1 2 3 24 24 H 1.09005 * 109.46711 * 179.61205 * 1 2 3 25 25 H 1.09003 * 109.47105 * 240.00919 * 2 1 3 26 26 H 1.08992 * 109.47607 * 120.00287 * 2 1 3 27 27 H 1.08994 * 109.46669 * 280.36107 * 4 3 2 28 28 H 1.09002 * 109.46524 * 40.36102 * 4 3 2 29 29 H 0.96993 * 120.00311 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47551 * 173.95678 * 13 3 2 31 31 H 1.08999 * 109.47332 * 53.95863 * 13 3 2 32 32 H 1.08000 * 119.87082 * 0.02562 * 15 14 13 33 33 H 0.97004 * 119.99463 * 0.02562 * 18 17 16 34 34 H 1.08000 * 120.36772 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7919 2.0240 -1.3030 5 6 1.8437 3.5216 -1.1439 6 1 2.1053 3.9547 -0.1897 7 6 1.5570 4.3392 -2.2165 8 7 1.6017 5.6462 -2.0776 9 14 1.1038 3.5903 -3.8667 10 1 -0.3673 3.4000 -3.9368 11 1 1.5380 4.4985 -4.9585 12 1 1.7806 2.2770 -4.0169 13 6 3.4394 1.4415 0.3730 14 6 3.6000 1.0044 1.8063 15 6 3.8165 -0.3453 2.1121 16 7 3.9562 -0.7266 3.3616 17 6 3.8937 0.1657 4.3638 18 7 4.0355 -0.2376 5.6066 19 7 3.6762 1.4973 4.0988 20 1 3.6280 2.1371 4.8264 21 6 3.5353 1.9155 2.8100 22 1 -0.3633 0.5077 0.8936 23 1 -0.3634 0.5199 -0.8864 24 1 -0.3633 -1.0277 -0.0070 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.5641 1.7061 -2.0034 28 1 0.8132 1.7327 -1.6843 29 1 1.4004 6.2213 -2.8323 30 1 3.8041 2.4626 0.2616 31 1 4.0121 0.7784 -0.2754 32 1 3.8689 -1.0751 1.3177 33 1 4.1851 -1.1768 5.7976 34 1 3.3688 2.9596 2.5898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389748774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:43 Heat of formation + Delta-G solvation = 51.842268 kcal Electronic energy + Delta-G solvation = -16565.987614 eV Core-core repulsion = 13919.930113 eV Total energy + Delta-G solvation = -2646.057501 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.90453 -38.73879 -35.54350 -35.40303 -34.53026 -32.26034 -31.24521 -28.83426 -26.12312 -25.58540 -23.97478 -23.51324 -21.31146 -19.18520 -18.95115 -18.63065 -17.82244 -16.80047 -16.25407 -15.99773 -15.58371 -15.48562 -15.01900 -14.58905 -14.42819 -13.99347 -13.40788 -13.21362 -12.92503 -12.52751 -12.41112 -12.33748 -12.13579 -11.87630 -11.63599 -11.50008 -11.26538 -10.98661 -10.67613 -10.62369 -8.91265 -8.63522 -8.19330 -6.19722 -0.19443 0.74074 1.40585 1.42683 1.51354 1.73812 2.41512 2.69571 3.15300 3.38828 3.45505 3.73325 3.87284 4.06688 4.27852 4.45567 4.55846 4.75507 4.75984 4.81268 4.92373 5.03337 5.09231 5.14101 5.19423 5.25902 5.41074 5.47953 5.69378 6.11164 6.12748 6.51132 6.75222 6.84751 6.87136 7.35997 7.43751 8.96655 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.036555 B = 0.006149 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.778300 B = 4552.494678 C = 4993.883017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.539 5.539 4 C 0.169 3.831 5 C -0.502 4.502 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.949 5.949 9 Si 0.935 3.065 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.249 1.249 13 C 0.126 3.874 14 C -0.262 4.262 15 C 0.260 3.740 16 N -0.589 5.589 17 C 0.527 3.473 18 N -0.805 5.805 19 N -0.601 5.601 20 H 0.434 0.566 21 C 0.224 3.776 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.079 0.921 27 H -0.009 1.009 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.186 0.814 33 H 0.350 0.650 34 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -10.769 4.556 12.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.264 5.264 4 C 0.042 3.958 5 C -0.541 4.541 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.590 5.590 9 Si 0.760 3.240 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.172 1.172 13 C -0.003 4.003 14 C -0.274 4.274 15 C 0.073 3.927 16 N -0.311 5.311 17 C 0.158 3.842 18 N -0.447 5.447 19 N -0.220 5.220 20 H 0.273 0.727 21 C 0.085 3.915 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.009 0.991 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.203 0.797 33 H 0.166 0.834 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.977 -10.748 6.251 12.785 hybrid contribution 0.013 0.112 -1.859 1.862 sum 2.990 -10.636 4.392 11.889 Atomic orbital electron populations 1.21753 0.95435 1.01516 1.01424 1.22179 0.96179 0.89293 1.00555 1.61945 1.17400 1.16190 1.30840 1.19970 0.95459 0.93402 0.86943 1.21288 1.44933 0.90623 0.97212 0.93346 1.25716 0.95550 0.94969 1.02495 1.70027 1.51871 1.04453 1.32686 0.85894 0.79161 0.79300 0.79652 1.19733 1.21467 1.17246 1.20518 0.88552 1.01559 0.89622 1.19931 1.16367 0.94253 0.96829 1.23757 0.80665 0.94478 0.93815 1.69965 1.25881 1.34174 1.01126 1.20366 0.90874 0.81831 0.91114 1.69928 1.35557 1.25246 1.13921 1.42391 1.62241 1.08478 1.08843 0.72673 1.22690 0.85681 1.01755 0.81372 0.93328 0.94007 0.90744 0.94612 0.90273 0.99085 0.95444 0.92787 0.90524 0.93099 0.79675 0.83363 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.98 71.98 0.72 -3.26 16 2 C 0.05 1.27 5.52 86.30 0.48 1.74 16 3 N -0.54 -18.41 4.37 -905.39 -3.96 -22.37 16 4 C 0.17 7.12 3.65 85.55 0.31 7.43 16 5 C -0.50 -26.05 9.17 25.60 0.23 -25.82 16 6 H 0.05 2.74 7.90 -2.91 -0.02 2.72 16 7 C 0.01 0.53 5.47 84.65 0.46 0.99 16 8 N -0.95 -56.10 13.96 21.45 0.30 -55.80 16 9 Si 0.94 41.46 27.37 68.60 1.88 43.33 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.25 -10.15 6.69 99.48 0.67 -9.49 16 13 C 0.13 3.62 4.95 85.56 0.42 4.04 16 14 C -0.26 -6.32 4.90 -20.00 -0.10 -6.42 16 15 C 0.26 6.01 9.12 85.20 0.78 6.79 16 16 N -0.59 -16.29 10.47 -197.54 -2.07 -18.36 16 17 C 0.53 15.03 8.69 261.57 2.27 17.30 16 18 N -0.81 -24.60 14.19 -59.87 -0.85 -25.45 16 19 N -0.60 -13.58 5.42 -197.50 -1.07 -14.65 16 20 H 0.43 7.92 8.93 -92.71 -0.83 7.09 16 21 C 0.22 4.94 10.94 83.43 0.91 5.85 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.29 6.52 -2.39 -0.02 1.27 16 24 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.04 0.93 8.05 -2.39 -0.02 0.91 16 26 H 0.08 1.91 5.15 -2.39 -0.01 1.90 16 27 H -0.01 -0.36 7.40 -2.39 -0.02 -0.37 16 28 H 0.03 1.17 5.39 -2.39 -0.01 1.16 16 29 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.08 2.51 7.26 -2.39 -0.02 2.49 16 31 H 0.05 1.31 8.08 -2.39 -0.02 1.29 16 32 H 0.19 3.21 7.75 -2.91 -0.02 3.19 16 33 H 0.35 10.39 8.90 -92.71 -0.82 9.57 16 34 H 0.20 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -65.62 283.05 0.16 -65.47 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.57 Total: 19.20 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 6.49 Total: 8.64 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -7.65 Total: -136.63 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.33 kcal Total: -65.62 0.16 -65.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389748774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.308 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds