Wall clock time and date at job start Sun Mar 29 2020 22:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 5 5 H 1.07996 * 120.00253 * 119.99870 * 4 2 1 6 6 C 1.37878 * 119.99674 * 300.00113 * 4 2 1 7 7 N 1.31513 * 120.00353 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99967 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47012 * 59.99851 * 8 6 4 10 10 H 1.48503 * 109.47338 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47354 * 300.00101 * 8 6 4 12 12 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 13 13 C 1.46901 * 110.99793 * 85.00144 * 12 2 1 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 2 15 15 H 1.08995 * 115.55630 * 29.32522 * 14 13 12 16 16 C 1.53003 * 117.49371 * 243.61836 * 14 13 12 17 17 C 1.53001 * 117.49608 * 174.99911 * 14 13 12 18 18 Cl 1.80304 * 117.49873 * 214.97657 * 17 14 13 19 19 Cl 1.80297 * 117.49938 * 359.97410 * 17 14 13 20 20 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 22 22 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 23 23 H 0.97002 * 120.00598 * 179.97438 * 7 6 4 24 24 H 1.00899 * 110.99995 * 321.04542 * 12 2 1 25 25 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 26 26 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 27 27 H 1.08998 * 117.50656 * 0.02562 * 16 14 13 28 28 H 1.09001 * 117.49674 * 145.02590 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0081 10 1 1.8270 -0.4198 5.2204 11 1 1.8259 -2.5202 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5949 -0.5333 -3.5745 15 1 2.3627 -1.5978 -3.6020 16 6 3.9296 -0.0852 -4.1735 17 6 2.6216 0.2187 -4.9067 18 17 2.2670 -0.7242 -6.4021 19 17 2.0460 1.9273 -4.9100 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7089 1.1614 3.4844 24 1 1.4495 -1.4980 -1.4100 25 1 2.7588 1.0462 -2.1183 26 1 1.0870 0.6163 -2.5525 27 1 4.4428 0.7477 -3.6928 28 1 4.5758 -0.8552 -4.5951 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393351704.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:11 Heat of formation + Delta-G solvation = 6.468049 kcal Electronic energy + Delta-G solvation = -12710.257019 eV Core-core repulsion = 10234.663752 eV Total energy + Delta-G solvation = -2475.593267 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.26869 -36.16429 -35.98656 -34.98017 -32.30726 -28.84857 -25.26380 -24.62567 -22.27715 -20.66798 -20.17019 -16.68451 -16.12378 -15.18365 -14.60579 -14.45794 -13.40280 -13.37395 -12.77663 -12.53140 -12.05451 -11.67112 -11.59192 -11.42202 -11.17362 -10.94322 -10.91747 -10.80470 -10.62517 -10.22006 -10.10956 -10.00689 -9.61042 -9.03374 -8.37218 -7.30927 -5.99608 -4.03291 1.15890 2.19609 3.24670 3.33908 3.38014 3.41168 4.14653 4.39841 4.45848 5.09798 5.31938 5.36718 5.50473 5.57675 5.79007 6.10061 6.32876 6.67609 6.82258 7.06423 7.31590 7.71899 7.85246 8.23769 8.46961 8.56791 9.03374 9.62059 11.07433 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.048194 B = 0.005155 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.848291 B = 5430.462882 C = 5644.139392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.681 5.681 13 C 0.085 3.915 14 C -0.097 4.097 15 H 0.128 0.872 16 C -0.136 4.136 17 C -0.006 4.006 18 Cl -0.108 7.108 19 Cl -0.096 7.096 20 H 0.028 0.972 21 H 0.089 0.911 22 H 0.006 0.994 23 H 0.260 0.740 24 H 0.326 0.674 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.120 0.880 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -0.983 -14.405 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.311 5.311 13 C -0.045 4.045 14 C -0.117 4.117 15 H 0.146 0.854 16 C -0.174 4.174 17 C -0.057 4.057 18 Cl -0.081 7.081 19 Cl -0.070 7.070 20 H 0.047 0.953 21 H 0.108 0.892 22 H 0.025 0.975 23 H 0.070 0.930 24 H 0.143 0.857 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.139 0.861 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.467 -0.705 -14.205 14.639 hybrid contribution -0.815 -0.212 0.391 0.928 sum 2.653 -0.917 -13.814 14.096 Atomic orbital electron populations 1.22437 1.00598 0.99280 1.00604 1.19175 0.89677 0.94458 0.86234 0.94792 1.21107 1.30384 1.12517 0.89548 0.91924 1.24952 0.95315 0.95194 0.99061 1.69871 1.37201 1.23142 1.23506 0.86557 0.79174 0.79596 0.82014 1.20281 1.21474 1.20358 1.60844 1.58199 1.08913 1.03095 1.21579 0.99223 0.95247 0.88453 1.23377 0.97947 1.00490 0.89875 0.85410 1.24018 0.90446 1.04046 0.98857 1.27021 1.06874 0.84065 0.87786 1.98730 1.95840 1.72866 1.40690 1.98743 1.90449 1.19512 1.98248 0.95269 0.89198 0.97545 0.92974 0.85730 0.90698 0.94665 0.86138 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.94 37.16 0.33 -3.69 15 2 C 0.21 5.20 2.57 -68.86 -0.18 5.02 15 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 15 4 C -0.50 -13.52 8.84 -34.44 -0.30 -13.82 15 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 15 6 C 0.06 1.52 5.30 -17.82 -0.09 1.43 15 7 N -0.90 -25.48 11.32 55.43 0.63 -24.85 15 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 12 N -0.68 -13.70 6.23 -107.95 -0.67 -14.37 15 13 C 0.08 1.42 4.85 -3.82 -0.02 1.41 15 14 C -0.10 -1.29 5.79 -90.62 -0.52 -1.81 15 15 H 0.13 1.61 8.13 -51.93 -0.42 1.19 15 16 C -0.14 -1.53 9.86 -26.73 -0.26 -1.79 15 17 C -0.01 -0.07 3.62 -26.73 -0.10 -0.17 15 18 Cl -0.11 -1.28 29.29 -51.86 -1.52 -2.80 15 19 Cl -0.10 -1.28 28.23 -51.86 -1.46 -2.74 15 20 H 0.03 0.66 8.13 -51.93 -0.42 0.23 15 21 H 0.09 2.37 6.07 -51.93 -0.32 2.06 15 22 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 15 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 24 H 0.33 6.18 8.46 -39.29 -0.33 5.85 15 25 H 0.07 1.31 7.79 -51.93 -0.40 0.90 15 26 H 0.04 0.62 7.31 -51.93 -0.38 0.24 15 27 H 0.12 1.32 8.03 -51.93 -0.42 0.91 15 28 H 0.12 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 269.15 15.07 4.06 4.06 Total: -1.00 -27.56 269.15 -8.59 -36.15 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -3.45 Total: 1.73 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -1.15 Total: -13.43 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: -0.05 Total: -39.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -2.98 Total: -5.54 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.56 -8.59 -36.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393351704.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.623 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds