Wall clock time and date at job start Sun Mar 29 2020 22:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 5 5 H 1.07996 * 120.00253 * 119.99870 * 4 2 1 6 6 C 1.37878 * 119.99674 * 300.00113 * 4 2 1 7 7 N 1.31513 * 120.00353 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99967 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47012 * 59.99851 * 8 6 4 10 10 H 1.48503 * 109.47338 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47354 * 300.00101 * 8 6 4 12 12 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 13 13 C 1.46901 * 110.99793 * 85.00144 * 12 2 1 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 2 15 15 H 1.08995 * 115.55630 * 29.32522 * 14 13 12 16 16 C 1.53003 * 117.49371 * 243.61836 * 14 13 12 17 17 C 1.53001 * 117.49608 * 174.99911 * 14 13 12 18 18 Cl 1.80304 * 117.49873 * 214.97657 * 17 14 13 19 19 Cl 1.80297 * 117.49938 * 359.97410 * 17 14 13 20 20 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 22 22 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 23 23 H 0.97002 * 120.00598 * 179.97438 * 7 6 4 24 24 H 1.00899 * 110.99995 * 321.04542 * 12 2 1 25 25 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 26 26 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 27 27 H 1.08998 * 117.50656 * 0.02562 * 16 14 13 28 28 H 1.09001 * 117.49674 * 145.02590 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0081 10 1 1.8270 -0.4198 5.2204 11 1 1.8259 -2.5202 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5949 -0.5333 -3.5745 15 1 2.3627 -1.5978 -3.6020 16 6 3.9296 -0.0852 -4.1735 17 6 2.6216 0.2187 -4.9067 18 17 2.2670 -0.7242 -6.4021 19 17 2.0460 1.9273 -4.9100 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7089 1.1614 3.4844 24 1 1.4495 -1.4980 -1.4100 25 1 2.7588 1.0462 -2.1183 26 1 1.0870 0.6163 -2.5525 27 1 4.4428 0.7477 -3.6928 28 1 4.5758 -0.8552 -4.5951 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393351704.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:11 Heat of formation + Delta-G solvation = -9.724600 kcal Electronic energy + Delta-G solvation = -12710.959184 eV Core-core repulsion = 10234.663752 eV Total energy + Delta-G solvation = -2476.295433 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.38905 -37.58493 -37.00750 -36.28661 -34.21778 -30.61327 -27.25108 -26.19341 -23.23445 -22.18885 -21.71636 -18.41311 -17.44228 -16.82793 -16.11854 -15.96101 -14.94447 -14.93491 -14.07197 -13.92925 -13.49219 -13.25584 -12.97028 -12.84209 -12.70427 -12.46116 -12.44250 -12.17933 -12.12940 -11.91080 -11.85611 -11.26332 -11.05368 -10.68106 -10.46307 -8.98326 -8.07692 -6.18951 0.17525 1.20290 1.46123 1.47447 1.55111 2.24011 2.46449 3.10104 3.21117 3.41027 3.85662 4.11495 4.27810 4.67291 4.68650 4.71040 4.78794 4.90723 5.07887 5.11332 5.42191 5.71114 5.82479 6.27820 6.62637 6.82058 6.95784 7.51082 8.97775 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.048194 B = 0.005155 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.848291 B = 5430.462882 C = 5644.139392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.002 0.998 4 C -0.515 4.515 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.680 5.680 13 C 0.092 3.908 14 C -0.106 4.106 15 H 0.139 0.861 16 C -0.119 4.119 17 C -0.004 4.004 18 Cl -0.099 7.099 19 Cl -0.108 7.108 20 H 0.034 0.966 21 H 0.061 0.939 22 H 0.023 0.977 23 H 0.260 0.740 24 H 0.335 0.665 25 H 0.064 0.936 26 H 0.027 0.973 27 H 0.124 0.876 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 -2.030 -15.088 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.020 0.980 4 C -0.553 4.553 5 H 0.077 0.923 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.310 5.310 13 C -0.038 4.038 14 C -0.126 4.126 15 H 0.156 0.844 16 C -0.157 4.157 17 C -0.056 4.056 18 Cl -0.072 7.072 19 Cl -0.081 7.081 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.042 0.958 23 H 0.070 0.930 24 H 0.152 0.848 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.142 0.858 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.220 -1.761 -14.913 15.598 hybrid contribution -1.054 0.122 0.537 1.189 sum 3.166 -1.639 -14.375 14.811 Atomic orbital electron populations 1.22253 1.00080 0.99364 1.00016 1.18926 0.89964 0.92812 0.87543 0.97969 1.21437 1.30446 1.12558 0.90906 0.92332 1.25726 0.95482 0.95864 1.01958 1.70006 1.38084 1.24319 1.24032 0.85573 0.78687 0.78677 0.78428 1.19810 1.21270 1.19576 1.60673 1.57893 1.09411 1.03058 1.21471 0.98795 0.94823 0.88710 1.23184 1.00027 1.00593 0.88775 0.84374 1.24167 0.89816 1.04413 0.97269 1.27009 1.07593 0.83367 0.87631 1.98736 1.95887 1.72554 1.40067 1.98746 1.90649 1.20437 1.98280 0.94705 0.92023 0.95805 0.93050 0.84791 0.91770 0.95497 0.85833 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.49 8.94 71.98 0.64 -6.84 15 2 C 0.22 10.68 2.57 44.17 0.11 10.80 15 3 H 0.00 0.13 7.80 -2.39 -0.02 0.11 15 4 C -0.51 -28.04 8.84 25.60 0.23 -27.81 15 5 H 0.06 3.17 7.81 -2.91 -0.02 3.14 15 6 C 0.01 0.42 5.30 84.66 0.45 0.87 15 7 N -0.92 -53.04 11.32 21.45 0.24 -52.79 15 8 Si 0.96 43.41 29.54 68.60 2.03 45.43 15 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 15 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 12 N -0.68 -26.96 6.23 -495.43 -3.09 -30.05 15 13 C 0.09 3.01 4.85 86.30 0.42 3.43 15 14 C -0.11 -2.62 5.79 -10.79 -0.06 -2.68 15 15 H 0.14 3.15 8.13 -2.39 -0.02 3.13 15 16 C -0.12 -2.37 9.86 30.60 0.30 -2.07 15 17 C 0.00 -0.10 3.62 30.60 0.11 0.02 15 18 Cl -0.10 -2.13 29.29 -2.72 -0.08 -2.21 15 19 Cl -0.11 -2.75 28.23 -2.72 -0.08 -2.83 15 20 H 0.03 1.56 8.13 -2.39 -0.02 1.54 15 21 H 0.06 3.29 6.07 -2.39 -0.01 3.28 15 22 H 0.02 1.00 7.45 -2.39 -0.02 0.98 15 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 15 24 H 0.33 12.29 8.46 -89.69 -0.76 11.54 15 25 H 0.06 2.23 7.79 -2.39 -0.02 2.21 15 26 H 0.03 0.93 7.31 -2.39 -0.02 0.91 15 27 H 0.12 2.44 8.03 -2.39 -0.02 2.42 15 28 H 0.14 2.16 8.14 -2.39 -0.02 2.14 15 Total: -1.00 -58.00 269.15 1.63 -56.37 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.40 Total: 10.37 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 2.20 Total: -24.30 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.84 Total: -82.84 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -4.88 SS G_CDS: -0.16 Total: -5.04 kcal Total: -58.00 1.63 -56.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393351704.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.649 kcal (2) G-P(sol) polarization free energy of solvation -58.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds