Wall clock time and date at job start Sun Mar 29 2020 22:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.52998 * 109.47303 * 179.97438 * 13 12 2 15 15 H 1.09003 * 115.55015 * 29.33524 * 14 13 12 16 16 C 1.53005 * 117.49793 * 174.99610 * 14 13 12 17 17 C 1.52999 * 117.50177 * 243.62166 * 14 13 12 18 18 Cl 1.80303 * 117.49533 * 0.02562 * 17 14 13 19 19 Cl 1.80294 * 117.49988 * 145.02229 * 17 14 13 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 24 24 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 25 25 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 26 26 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 27 27 H 1.08997 * 117.49906 * 214.97605 * 16 14 13 28 28 H 1.08997 * 117.49614 * 0.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5952 -0.5333 3.5744 15 1 3.2680 -1.3655 3.3670 16 6 2.8442 0.2757 4.8490 17 6 1.6458 -0.6720 4.7661 18 17 0.0081 0.0673 4.6161 19 17 1.7250 -2.1997 5.7202 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 0.7093 1.1619 -3.4844 24 1 1.4496 -1.4980 1.4100 25 1 2.7589 1.0462 2.1181 26 1 1.0871 0.6162 2.5525 27 1 3.6804 -0.0246 5.4803 28 1 2.6424 1.3462 4.8131 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393351706.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:14 Heat of formation + Delta-G solvation = 7.533375 kcal Electronic energy + Delta-G solvation = -12803.590480 eV Core-core repulsion = 10328.043409 eV Total energy + Delta-G solvation = -2475.547071 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.29471 -36.11704 -35.95304 -34.97780 -32.28244 -28.82638 -25.22633 -24.59925 -22.35448 -20.52304 -20.16543 -16.81342 -16.13988 -15.18765 -14.63542 -14.20680 -13.60840 -13.31941 -12.75644 -12.53027 -12.04400 -11.62993 -11.53431 -11.47391 -11.14103 -10.94964 -10.91070 -10.65294 -10.50088 -10.33652 -10.12880 -9.87298 -9.63254 -8.98675 -8.36045 -7.26407 -5.97992 -4.01185 1.18585 2.21167 3.23205 3.32326 3.40095 3.45441 4.17334 4.30627 4.47780 5.08485 5.33795 5.34809 5.48258 5.55937 5.85273 6.13400 6.33793 6.71164 6.86598 7.10197 7.34867 7.74936 7.88485 8.26465 8.50680 8.60028 9.06249 9.64231 11.09127 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.043864 B = 0.005585 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.182042 B = 5012.359227 C = 5252.410264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.681 5.681 13 C 0.075 3.925 14 C -0.100 4.100 15 H 0.135 0.865 16 C -0.144 4.144 17 C -0.006 4.006 18 Cl -0.093 7.093 19 Cl -0.106 7.106 20 H 0.005 0.995 21 H 0.028 0.972 22 H 0.088 0.912 23 H 0.259 0.741 24 H 0.327 0.673 25 H 0.079 0.921 26 H 0.041 0.959 27 H 0.118 0.882 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 -1.161 14.998 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.311 5.311 13 C -0.055 4.055 14 C -0.119 4.119 15 H 0.153 0.847 16 C -0.182 4.182 17 C -0.057 4.057 18 Cl -0.066 7.066 19 Cl -0.079 7.079 20 H 0.025 0.975 21 H 0.047 0.953 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.143 0.857 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.136 0.864 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.002 -1.025 14.746 14.916 hybrid contribution -0.929 -0.393 -0.483 1.119 sum 1.073 -1.418 14.263 14.373 Atomic orbital electron populations 1.22421 1.00587 0.99277 1.00503 1.19172 0.89688 0.94387 0.86332 0.94860 1.21192 1.30116 1.12423 0.89548 0.91848 1.24952 0.95351 0.95218 0.99064 1.69892 1.37391 1.23231 1.23230 0.86455 0.78493 0.79660 0.82863 1.19720 1.21242 1.21173 1.60845 1.58159 1.08985 1.03087 1.21704 0.99590 0.95448 0.88708 1.23505 0.96962 1.01839 0.89616 0.84719 1.23973 0.95411 0.98622 1.00223 1.27007 0.84229 0.89848 1.04614 1.98740 1.27910 1.82374 1.97553 1.98732 1.97892 1.36450 1.74821 0.97548 0.95318 0.89294 0.93139 0.85652 0.90283 0.94138 0.86406 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.94 37.16 0.33 -3.72 15 2 C 0.21 5.24 2.57 -68.87 -0.18 5.06 15 3 H 0.03 0.90 7.80 -51.93 -0.40 0.50 15 4 C -0.49 -13.55 8.84 -34.44 -0.30 -13.86 15 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 15 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 15 7 N -0.90 -25.59 11.32 55.43 0.63 -24.96 15 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 15 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 12 N -0.68 -13.97 6.23 -107.95 -0.67 -14.64 15 13 C 0.08 1.26 5.68 -3.83 -0.02 1.24 15 14 C -0.10 -1.32 5.79 -90.62 -0.52 -1.84 15 15 H 0.14 1.78 8.14 -51.93 -0.42 1.36 15 16 C -0.14 -1.49 9.94 -26.72 -0.27 -1.76 15 17 C -0.01 -0.07 3.62 -26.73 -0.10 -0.17 15 18 Cl -0.09 -1.28 27.27 -51.86 -1.41 -2.69 15 19 Cl -0.11 -1.30 29.29 -51.86 -1.52 -2.82 15 20 H 0.01 0.12 7.45 -51.93 -0.39 -0.26 15 21 H 0.03 0.66 8.13 -51.93 -0.42 0.24 15 22 H 0.09 2.37 6.07 -51.93 -0.32 2.06 15 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 24 H 0.33 6.53 8.47 -39.29 -0.33 6.20 15 25 H 0.08 1.34 8.06 -51.93 -0.42 0.92 15 26 H 0.04 0.70 5.35 -51.93 -0.28 0.42 15 27 H 0.12 0.99 8.14 -51.93 -0.42 0.57 15 28 H 0.12 1.13 8.14 -51.93 -0.42 0.70 15 LS Contribution 267.52 15.07 4.03 4.03 Total: -1.00 -27.90 267.52 -8.49 -36.39 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.37 Total: 1.93 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.15 Total: -13.64 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.05 Total: -39.60 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -2.93 Total: -5.51 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.90 -8.49 -36.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393351706.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.920 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds