Wall clock time and date at job start Sun Mar 29 2020 22:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.52998 * 109.47303 * 179.97438 * 13 12 2 15 15 H 1.09003 * 115.55015 * 29.33524 * 14 13 12 16 16 C 1.53005 * 117.49793 * 174.99610 * 14 13 12 17 17 C 1.52999 * 117.50177 * 243.62166 * 14 13 12 18 18 Cl 1.80303 * 117.49533 * 0.02562 * 17 14 13 19 19 Cl 1.80294 * 117.49988 * 145.02229 * 17 14 13 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 24 24 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 25 25 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 26 26 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 27 27 H 1.08997 * 117.49906 * 214.97605 * 16 14 13 28 28 H 1.08997 * 117.49614 * 0.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5952 -0.5333 3.5744 15 1 3.2680 -1.3655 3.3670 16 6 2.8442 0.2757 4.8490 17 6 1.6458 -0.6720 4.7661 18 17 0.0081 0.0673 4.6161 19 17 1.7250 -2.1997 5.7202 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 0.7093 1.1619 -3.4844 24 1 1.4496 -1.4980 1.4100 25 1 2.7589 1.0462 2.1181 26 1 1.0871 0.6162 2.5525 27 1 3.6804 -0.0246 5.4803 28 1 2.6424 1.3462 4.8131 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393351706.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:14 Heat of formation + Delta-G solvation = -9.068740 kcal Electronic energy + Delta-G solvation = -12804.310402 eV Core-core repulsion = 10328.043409 eV Total energy + Delta-G solvation = -2476.266993 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.40320 -37.53523 -37.00180 -36.28429 -34.20764 -30.59915 -27.24769 -26.16684 -23.27434 -22.10206 -21.65714 -18.45326 -17.60043 -16.80426 -16.15156 -15.66197 -15.19743 -14.86852 -14.14026 -13.77212 -13.50797 -13.31001 -12.97768 -12.84936 -12.71769 -12.40793 -12.35972 -12.18853 -12.10651 -11.84511 -11.82605 -11.34069 -10.99214 -10.66462 -10.47288 -8.95326 -8.07917 -6.18675 0.20535 1.21708 1.43532 1.45627 1.57717 2.26580 2.45912 3.13293 3.20870 3.32024 3.90911 4.11967 4.39313 4.64511 4.69132 4.74062 4.81399 4.92726 5.07495 5.15100 5.43639 5.71210 5.83334 6.28655 6.64514 6.81768 6.96042 7.51315 8.97858 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.043864 B = 0.005585 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.182042 B = 5012.359227 C = 5252.410264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.683 5.683 13 C 0.079 3.921 14 C -0.110 4.110 15 H 0.136 0.864 16 C -0.114 4.114 17 C -0.011 4.011 18 Cl -0.108 7.108 19 Cl -0.102 7.102 20 H 0.023 0.977 21 H 0.029 0.971 22 H 0.061 0.939 23 H 0.260 0.740 24 H 0.331 0.669 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.145 0.855 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -1.621 15.880 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.312 5.312 13 C -0.051 4.051 14 C -0.129 4.129 15 H 0.154 0.846 16 C -0.152 4.152 17 C -0.063 4.063 18 Cl -0.081 7.081 19 Cl -0.075 7.075 20 H 0.042 0.958 21 H 0.048 0.952 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.147 0.853 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.163 0.837 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.768 -1.491 15.650 15.963 hybrid contribution -1.158 -0.246 -0.705 1.378 sum 1.610 -1.737 14.945 15.131 Atomic orbital electron populations 1.22228 1.00204 0.99077 0.99928 1.18921 0.89840 0.92876 0.87553 0.97667 1.21492 1.30235 1.12418 0.90994 0.92576 1.25711 0.95513 0.95893 1.01902 1.70013 1.38157 1.24317 1.23877 0.85475 0.78000 0.78640 0.79287 1.19218 1.20837 1.20776 1.60697 1.57713 1.09481 1.03325 1.21665 0.99549 0.95109 0.88769 1.23259 0.97867 1.02723 0.89086 0.84579 1.24160 0.94671 0.98835 0.97528 1.27106 0.84004 0.90681 1.04462 1.98740 1.29160 1.82564 1.97604 1.98735 1.97826 1.36430 1.74533 0.95834 0.95186 0.92027 0.93069 0.85281 0.90803 0.94484 0.83671 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.49 8.94 71.98 0.64 -6.85 15 2 C 0.22 10.82 2.57 44.17 0.11 10.93 15 3 H 0.01 0.30 7.80 -2.39 -0.02 0.28 15 4 C -0.51 -28.29 8.84 25.60 0.23 -28.06 15 5 H 0.06 3.11 7.81 -2.91 -0.02 3.09 15 6 C 0.01 0.43 5.30 84.65 0.45 0.88 15 7 N -0.92 -53.13 11.32 21.45 0.24 -52.89 15 8 Si 0.96 43.89 29.54 68.60 2.03 45.91 15 9 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 12 N -0.68 -27.78 6.23 -495.46 -3.09 -30.86 15 13 C 0.08 2.55 5.68 86.30 0.49 3.04 15 14 C -0.11 -2.69 5.79 -10.79 -0.06 -2.75 15 15 H 0.14 3.34 8.14 -2.39 -0.02 3.32 15 16 C -0.11 -2.01 9.94 30.60 0.30 -1.71 15 17 C -0.01 -0.26 3.62 30.60 0.11 -0.15 15 18 Cl -0.11 -2.82 27.27 -2.72 -0.07 -2.89 15 19 Cl -0.10 -2.30 29.29 -2.72 -0.08 -2.37 15 20 H 0.02 1.01 7.45 -2.39 -0.02 0.99 15 21 H 0.03 1.39 8.13 -2.39 -0.02 1.37 15 22 H 0.06 3.33 6.07 -2.38 -0.01 3.32 15 23 H 0.26 14.24 8.31 -92.71 -0.77 13.47 15 24 H 0.33 13.02 8.47 -89.69 -0.76 12.26 15 25 H 0.07 2.46 8.06 -2.39 -0.02 2.44 15 26 H 0.04 1.24 5.35 -2.39 -0.01 1.23 15 27 H 0.15 1.84 8.14 -2.39 -0.02 1.82 15 28 H 0.13 2.05 8.14 -2.39 -0.02 2.03 15 Total: -1.00 -59.00 267.52 1.71 -57.29 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.41 Total: 10.48 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 2.27 Total: -24.66 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.84 Total: -83.75 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -5.11 SS G_CDS: -0.15 Total: -5.27 kcal Total: -59.00 1.71 -57.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393351706.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.219 kcal (2) G-P(sol) polarization free energy of solvation -58.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds