Wall clock time and date at job start Sun Mar 29 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47501 * 2 1 4 4 C 1.50704 * 109.46963 * 239.99764 * 2 1 3 5 5 H 1.08003 * 120.00318 * 275.00126 * 4 2 1 6 6 C 1.37871 * 120.00080 * 95.00366 * 4 2 1 7 7 N 1.31516 * 120.00681 * 184.91339 * 6 4 2 8 8 Si 1.86805 * 119.99829 * 4.91518 * 6 4 2 9 9 H 1.48500 * 109.47344 * 84.83088 * 8 6 4 10 10 H 1.48501 * 109.47116 * 204.82880 * 8 6 4 11 11 H 1.48498 * 109.46969 * 324.82804 * 8 6 4 12 12 N 1.46900 * 109.47068 * 120.00298 * 2 1 3 13 13 C 1.46902 * 110.99695 * 274.99551 * 12 2 1 14 14 C 1.52998 * 109.47021 * 179.97438 * 13 12 2 15 15 H 1.08996 * 115.55011 * 29.33493 * 14 13 12 16 16 C 1.52999 * 117.49985 * 243.62165 * 14 13 12 17 17 C 1.52999 * 60.00365 * 252.51125 * 16 14 13 18 18 Cl 1.80298 * 117.50193 * 252.51020 * 17 16 14 19 19 Cl 1.80300 * 117.51887 * 107.47816 * 17 16 14 20 20 H 1.08998 * 109.47637 * 175.05147 * 1 2 3 21 21 H 1.09002 * 109.47218 * 295.05544 * 1 2 3 22 22 H 1.09005 * 109.47139 * 55.05096 * 1 2 3 23 23 H 0.96997 * 120.00678 * 179.97438 * 7 6 4 24 24 H 1.00902 * 111.00070 * 151.04581 * 12 2 1 25 25 H 1.09000 * 109.47449 * 300.00229 * 13 12 2 26 26 H 1.08997 * 109.47280 * 59.99864 * 13 12 2 27 27 H 1.08996 * 117.49713 * 0.02562 * 16 14 13 28 28 H 1.08994 * 117.50025 * 145.02205 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7856 -1.2291 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3947 -1.7821 10 1 2.1059 2.3990 -3.6928 11 1 1.1986 2.3274 -1.4451 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.5950 -0.5332 3.5744 15 1 3.2677 -1.3654 3.3671 16 6 1.6455 -0.6717 4.7661 17 6 2.8440 0.2758 4.8490 18 17 4.2272 -0.2209 5.8934 19 17 2.5116 2.0468 4.7892 20 1 -0.3634 -1.0238 -0.0886 21 1 -0.3634 0.4352 0.9310 22 1 -0.3634 0.5887 -0.8424 23 1 2.9363 -0.1050 -4.2556 24 1 2.9172 -1.1206 1.0287 25 1 2.7588 1.0462 2.1182 26 1 1.0871 0.6164 2.5525 27 1 0.6555 -0.2247 4.6754 28 1 1.6932 -1.5952 5.3430 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393351707.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:15 Heat of formation + Delta-G solvation = 5.367432 kcal Electronic energy + Delta-G solvation = -12774.465536 eV Core-core repulsion = 10298.824543 eV Total energy + Delta-G solvation = -2475.640993 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.34118 -36.22638 -36.04890 -35.02938 -32.29060 -29.65686 -25.64826 -24.61821 -22.34742 -20.69046 -19.72705 -17.17827 -16.34071 -15.57259 -14.74718 -14.14724 -13.87760 -13.10837 -12.96759 -12.55631 -12.35158 -12.26199 -11.73979 -11.51273 -11.24243 -11.09421 -10.98299 -10.78122 -10.67393 -10.51651 -10.21820 -9.84555 -9.68908 -9.05788 -8.64028 -7.52912 -6.15756 -4.17092 1.10928 2.13788 3.17990 3.22633 3.31784 3.33333 4.07823 4.33843 4.34198 4.97920 5.15826 5.29681 5.40419 5.49752 5.69443 5.98459 6.18524 6.37425 6.61294 6.77580 6.84248 7.35757 7.57404 7.86500 8.30247 8.58699 8.93222 9.47988 10.97099 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.036005 B = 0.006013 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.489756 B = 4655.438898 C = 4791.444551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.180 3.820 3 H 0.005 0.995 4 C -0.520 4.520 5 H 0.080 0.920 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.874 3.126 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.681 5.681 13 C 0.081 3.919 14 C -0.098 4.098 15 H 0.131 0.869 16 C -0.136 4.136 17 C -0.005 4.005 18 Cl -0.105 7.105 19 Cl -0.098 7.098 20 H 0.052 0.948 21 H 0.020 0.980 22 H 0.041 0.959 23 H 0.265 0.735 24 H 0.342 0.658 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 2.520 16.962 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.072 3.928 3 H 0.023 0.977 4 C -0.558 4.558 5 H 0.098 0.902 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.701 3.299 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.313 5.313 13 C -0.049 4.049 14 C -0.117 4.117 15 H 0.149 0.851 16 C -0.174 4.174 17 C -0.057 4.057 18 Cl -0.078 7.078 19 Cl -0.071 7.071 20 H 0.071 0.929 21 H 0.039 0.961 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.160 0.840 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.137 0.863 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.935 2.409 16.997 17.192 hybrid contribution 0.937 1.712 -0.176 1.959 sum 0.003 4.121 16.822 17.319 Atomic orbital electron populations 1.21845 0.97996 1.00766 0.97750 1.19571 0.92503 0.92553 0.88171 0.97729 1.21055 1.43859 0.95911 0.95019 0.90151 1.25024 0.94305 0.98182 0.95333 1.69893 1.45814 1.35860 1.01651 0.86911 0.79068 0.86568 0.77313 1.20255 1.21339 1.18975 1.60732 1.33164 1.32385 1.05007 1.21645 0.99983 0.93775 0.89491 1.23366 1.00199 0.98952 0.89196 0.85123 1.24014 0.94360 0.98892 1.00106 1.26999 0.94184 0.82676 1.01866 1.98735 1.48436 1.90451 1.70195 1.98741 1.94793 1.15218 1.98359 0.92898 0.96125 0.94016 0.92497 0.83965 0.94617 0.90801 0.86253 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.42 37.15 0.35 -2.32 15 2 C 0.18 4.12 2.26 -68.87 -0.16 3.96 15 3 H 0.01 0.12 4.95 -51.93 -0.26 -0.14 15 4 C -0.52 -14.11 8.84 -34.44 -0.30 -14.41 15 5 H 0.08 2.38 8.06 -52.48 -0.42 1.96 15 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 15 7 N -0.89 -26.71 13.96 55.43 0.77 -25.93 15 8 Si 0.87 21.17 26.99 -169.99 -4.59 16.58 15 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 11 H -0.27 -6.19 6.82 56.52 0.39 -5.80 15 12 N -0.68 -13.15 6.30 -107.95 -0.68 -13.83 15 13 C 0.08 1.29 4.85 -3.82 -0.02 1.27 15 14 C -0.10 -1.24 5.79 -90.62 -0.52 -1.77 15 15 H 0.13 1.61 8.13 -51.93 -0.42 1.19 15 16 C -0.14 -1.42 9.86 -26.73 -0.26 -1.69 15 17 C -0.01 -0.06 3.62 -26.73 -0.10 -0.16 15 18 Cl -0.11 -1.23 29.29 -51.86 -1.52 -2.75 15 19 Cl -0.10 -1.26 28.23 -51.86 -1.46 -2.72 15 20 H 0.05 1.13 8.14 -51.93 -0.42 0.70 15 21 H 0.02 0.38 7.36 -51.93 -0.38 0.00 15 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 24 H 0.34 6.63 8.34 -39.29 -0.33 6.31 15 25 H 0.04 0.61 7.93 -51.93 -0.41 0.20 15 26 H 0.07 1.17 7.09 -51.93 -0.37 0.80 15 27 H 0.12 1.18 8.03 -51.93 -0.42 0.77 15 28 H 0.12 1.03 8.14 -51.93 -0.42 0.61 15 LS Contribution 268.54 15.07 4.05 4.05 Total: -1.00 -28.35 268.54 -7.97 -36.32 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -3.43 Total: 1.40 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.11 Total: -13.12 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.09 Total: -39.77 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.59 Total: 16.58 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -2.98 Total: -5.47 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.35 -7.97 -36.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393351707.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.687 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds