Wall clock time and date at job start Sun Mar 29 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47501 * 2 1 4 4 C 1.50704 * 109.46963 * 239.99764 * 2 1 3 5 5 H 1.08003 * 120.00318 * 275.00126 * 4 2 1 6 6 C 1.37871 * 120.00080 * 95.00366 * 4 2 1 7 7 N 1.31516 * 120.00681 * 184.91339 * 6 4 2 8 8 Si 1.86805 * 119.99829 * 4.91518 * 6 4 2 9 9 H 1.48500 * 109.47344 * 84.83088 * 8 6 4 10 10 H 1.48501 * 109.47116 * 204.82880 * 8 6 4 11 11 H 1.48498 * 109.46969 * 324.82804 * 8 6 4 12 12 N 1.46900 * 109.47068 * 120.00298 * 2 1 3 13 13 C 1.46902 * 110.99695 * 274.99551 * 12 2 1 14 14 C 1.52998 * 109.47021 * 179.97438 * 13 12 2 15 15 H 1.08996 * 115.55011 * 29.33493 * 14 13 12 16 16 C 1.52999 * 117.49985 * 243.62165 * 14 13 12 17 17 C 1.52999 * 60.00365 * 252.51125 * 16 14 13 18 18 Cl 1.80298 * 117.50193 * 252.51020 * 17 16 14 19 19 Cl 1.80300 * 117.51887 * 107.47816 * 17 16 14 20 20 H 1.08998 * 109.47637 * 175.05147 * 1 2 3 21 21 H 1.09002 * 109.47218 * 295.05544 * 1 2 3 22 22 H 1.09005 * 109.47139 * 55.05096 * 1 2 3 23 23 H 0.96997 * 120.00678 * 179.97438 * 7 6 4 24 24 H 1.00902 * 111.00070 * 151.04581 * 12 2 1 25 25 H 1.09000 * 109.47449 * 300.00229 * 13 12 2 26 26 H 1.08997 * 109.47280 * 59.99864 * 13 12 2 27 27 H 1.08996 * 117.49713 * 0.02562 * 16 14 13 28 28 H 1.08994 * 117.50025 * 145.02205 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7856 -1.2291 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3947 -1.7821 10 1 2.1059 2.3990 -3.6928 11 1 1.1986 2.3274 -1.4451 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.5950 -0.5332 3.5744 15 1 3.2677 -1.3654 3.3671 16 6 1.6455 -0.6717 4.7661 17 6 2.8440 0.2758 4.8490 18 17 4.2272 -0.2209 5.8934 19 17 2.5116 2.0468 4.7892 20 1 -0.3634 -1.0238 -0.0886 21 1 -0.3634 0.4352 0.9310 22 1 -0.3634 0.5887 -0.8424 23 1 2.9363 -0.1050 -4.2556 24 1 2.9172 -1.1206 1.0287 25 1 2.7588 1.0462 2.1182 26 1 1.0871 0.6164 2.5525 27 1 0.6555 -0.2247 4.6754 28 1 1.6932 -1.5952 5.3430 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393351707.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:15 Heat of formation + Delta-G solvation = -12.553041 kcal Electronic energy + Delta-G solvation = -12775.242626 eV Core-core repulsion = 10298.824543 eV Total energy + Delta-G solvation = -2476.418083 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.39676 -37.57990 -37.01106 -36.26499 -34.28620 -31.30949 -27.42286 -26.21803 -23.24133 -21.80066 -21.52460 -19.12003 -17.43218 -17.12888 -15.99870 -15.78863 -15.45372 -14.64953 -14.38156 -14.10766 -13.80913 -13.30464 -12.99901 -12.91257 -12.69042 -12.61085 -12.32172 -12.20821 -12.08950 -11.91028 -11.82154 -11.30536 -11.01228 -10.78799 -10.67085 -9.11171 -8.31516 -6.36852 0.17973 1.19682 1.31794 1.34318 1.44017 2.23993 2.31216 2.98685 3.12008 3.40942 3.78901 4.06375 4.26403 4.53077 4.68922 4.71585 4.72993 4.90460 5.01952 5.02120 5.17336 5.51680 5.71338 6.02135 6.51351 6.68023 6.83394 7.32664 8.85010 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.036005 B = 0.006013 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.489756 B = 4655.438898 C = 4791.444551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.182 3.818 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.040 0.960 6 C 0.018 3.982 7 N -0.944 5.944 8 Si 0.936 3.064 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.247 1.247 12 N -0.680 5.680 13 C 0.086 3.914 14 C -0.110 4.110 15 H 0.134 0.866 16 C -0.114 4.114 17 C -0.007 4.007 18 Cl -0.103 7.103 19 Cl -0.107 7.107 20 H 0.045 0.955 21 H 0.050 0.950 22 H 0.035 0.965 23 H 0.267 0.733 24 H 0.339 0.661 25 H 0.025 0.975 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 3.582 18.883 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.059 0.941 6 C -0.180 4.180 7 N -0.583 5.583 8 Si 0.761 3.239 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.171 1.171 12 N -0.311 5.311 13 C -0.044 4.044 14 C -0.130 4.130 15 H 0.151 0.849 16 C -0.152 4.152 17 C -0.058 4.058 18 Cl -0.076 7.076 19 Cl -0.080 7.080 20 H 0.064 0.936 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.157 0.843 25 H 0.044 0.956 26 H 0.098 0.902 27 H 0.148 0.852 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.624 3.470 18.952 19.335 hybrid contribution 1.173 1.282 -0.722 1.882 sum -0.451 4.752 18.230 18.845 Atomic orbital electron populations 1.21750 0.96540 1.00556 0.99106 1.19459 0.93588 0.91926 0.87739 0.97959 1.21291 1.43208 0.94387 0.96979 0.94138 1.25841 0.94197 1.03126 0.94870 1.70037 1.47845 1.37869 1.02583 0.85902 0.79807 0.80598 0.77610 1.19582 1.21226 1.17058 1.60631 1.33029 1.32767 1.04687 1.21614 1.00305 0.93171 0.89306 1.23183 1.01902 0.99217 0.88653 0.84869 1.24179 0.94031 0.99152 0.97799 1.27034 0.95111 0.82369 1.01324 1.98740 1.48543 1.90341 1.69934 1.98743 1.94813 1.16067 1.98377 0.93620 0.93076 0.94630 0.92438 0.84341 0.95644 0.90172 0.85194 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.42 71.98 0.68 -4.24 15 2 C 0.18 8.10 2.26 44.17 0.10 8.20 15 3 H 0.00 0.13 4.95 -2.39 -0.01 0.11 15 4 C -0.52 -28.61 8.84 25.60 0.23 -28.39 15 5 H 0.04 2.49 8.06 -2.91 -0.02 2.47 15 6 C 0.02 1.02 5.47 84.65 0.46 1.48 15 7 N -0.94 -57.67 13.96 21.45 0.30 -57.37 15 8 Si 0.94 43.29 26.99 68.60 1.85 45.14 15 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 15 11 H -0.25 -10.61 6.82 99.48 0.68 -9.93 15 12 N -0.68 -25.45 6.30 -495.46 -3.12 -28.57 15 13 C 0.09 2.54 4.85 86.30 0.42 2.96 15 14 C -0.11 -2.54 5.79 -10.79 -0.06 -2.61 15 15 H 0.13 3.03 8.13 -2.39 -0.02 3.01 15 16 C -0.11 -2.00 9.86 30.59 0.30 -1.70 15 17 C -0.01 -0.14 3.62 30.60 0.11 -0.03 15 18 Cl -0.10 -2.18 29.29 -2.72 -0.08 -2.26 15 19 Cl -0.11 -2.51 28.23 -2.72 -0.08 -2.58 15 20 H 0.04 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.05 1.75 7.36 -2.39 -0.02 1.73 15 22 H 0.03 1.46 8.14 -2.38 -0.02 1.44 15 23 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 24 H 0.34 13.05 8.34 -89.69 -0.75 12.30 15 25 H 0.03 0.82 7.93 -2.39 -0.02 0.80 15 26 H 0.08 2.28 7.09 -2.39 -0.02 2.26 15 27 H 0.13 2.07 8.03 -2.39 -0.02 2.05 15 28 H 0.14 1.88 8.14 -2.39 -0.02 1.86 15 Total: -1.00 -60.81 268.54 1.50 -59.31 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.39 Total: 10.65 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 2.24 Total: -24.32 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.82 Total: -85.94 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.85 Total: 45.14 kcal Atomic # 17 Polarization: -4.68 SS G_CDS: -0.16 Total: -4.84 kcal Total: -60.81 1.50 -59.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393351707.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.757 kcal (2) G-P(sol) polarization free energy of solvation -60.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds