Wall clock time and date at job start Sun Mar 29 2020 22:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47359 * 270.00578 * 3 2 1 5 5 H 1.48504 * 109.46969 * 30.00399 * 3 2 1 6 6 H 1.48500 * 109.47384 * 150.00350 * 3 2 1 7 7 C 1.37878 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00573 * 359.97438 * 7 2 1 9 9 S 1.76206 * 119.99873 * 179.97438 * 7 2 1 10 10 O 1.42098 * 106.40369 * 66.46150 * 9 7 2 11 11 O 1.42101 * 106.40006 * 293.54107 * 9 7 2 12 12 N 1.65596 * 107.21689 * 179.97438 * 9 7 2 13 13 C 1.46505 * 119.99941 * 65.00216 * 12 9 7 14 14 C 1.52997 * 109.47212 * 164.99768 * 13 12 9 15 15 F 1.39908 * 112.85068 * 50.33061 * 14 13 12 16 16 C 1.53783 * 113.61558 * 279.13719 * 14 13 12 17 17 C 1.53957 * 87.02186 * 220.04531 * 16 14 13 18 18 C 1.53778 * 113.61679 * 181.52921 * 14 13 12 19 19 H 0.97000 * 119.99752 * 359.97438 * 1 2 3 20 20 H 0.96997 * 120.00145 * 244.99335 * 12 9 7 21 21 H 1.09002 * 109.47068 * 284.99828 * 13 12 9 22 22 H 1.09001 * 109.47372 * 44.99916 * 13 12 9 23 23 H 1.09000 * 113.61048 * 334.56744 * 16 14 13 24 24 H 1.09003 * 113.61260 * 105.46712 * 16 14 13 25 25 H 1.09000 * 113.53827 * 270.81220 * 17 16 14 26 26 H 1.08998 * 113.66516 * 139.92867 * 17 16 14 27 27 H 1.09006 * 113.61506 * 254.52982 * 18 14 13 28 28 H 1.08996 * 113.61642 * 25.43366 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1683 -0.6500 1.2485 11 8 4.1673 -0.6494 -1.2510 12 7 4.2567 -2.7759 -0.0011 13 6 3.9609 -3.6345 -1.1507 14 6 4.8197 -4.8986 -1.0774 15 9 4.7523 -5.5298 0.1694 16 6 6.2558 -4.6982 -1.5895 17 6 6.1313 -6.0871 -2.2420 18 6 4.6113 -5.8545 -2.2638 19 1 -0.4850 0.8401 0.0004 20 1 4.7397 -3.1339 0.7601 21 1 2.9064 -3.9103 -1.1364 22 1 4.1834 -3.0970 -2.0725 23 1 6.3534 -3.8850 -2.3087 24 1 7.0005 -4.6533 -0.7947 25 1 6.4388 -6.9039 -1.5891 26 1 6.5783 -6.1459 -3.2344 27 1 4.0302 -6.7420 -2.0128 28 1 4.2585 -5.3582 -3.1678 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393539733.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:39 Heat of formation + Delta-G solvation = -139.859525 kcal Electronic energy + Delta-G solvation = -15469.921192 eV Core-core repulsion = 12561.690016 eV Total energy + Delta-G solvation = -2908.231176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.72151 -39.09014 -37.69653 -36.51564 -35.63149 -35.18094 -28.74213 -28.48235 -26.74431 -23.66672 -21.22631 -20.51635 -19.45720 -18.68783 -17.89363 -17.03052 -16.85152 -16.34508 -15.97922 -15.65563 -15.30760 -15.06970 -14.77198 -14.53420 -13.76444 -13.52424 -13.40859 -13.23351 -12.97709 -12.72167 -12.57884 -12.31450 -11.91193 -11.82408 -11.34030 -11.32460 -11.17126 -11.13389 -10.27068 -8.97002 -7.54040 0.11640 1.05894 1.15246 1.22580 1.89481 2.40962 2.50415 3.27047 3.28032 3.33087 3.46678 3.71263 3.82080 4.19334 4.36121 4.55981 4.74123 4.77478 4.79183 4.86077 5.02773 5.06769 5.17659 5.37555 5.50852 5.99528 6.18248 6.52811 8.20731 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.047735 B = 0.007746 C = 0.007466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.425318 B = 3613.690460 C = 3749.429266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.107 3.893 3 Si 0.828 3.172 4 H -0.235 1.235 5 H -0.221 1.221 6 H -0.230 1.230 7 C -1.040 5.040 8 H 0.105 0.895 9 S 2.702 3.298 10 O -1.030 7.030 11 O -1.023 7.023 12 N -1.111 6.111 13 C 0.105 3.895 14 C 0.071 3.929 15 F -0.201 7.201 16 C -0.158 4.158 17 C -0.128 4.128 18 C -0.146 4.146 19 H 0.292 0.708 20 H 0.418 0.582 21 H 0.070 0.930 22 H 0.102 0.898 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.796 -10.182 -5.381 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.109 4.109 3 Si 0.644 3.356 4 H -0.158 1.158 5 H -0.143 1.143 6 H -0.152 1.152 7 C -1.173 5.173 8 H 0.123 0.877 9 S 2.802 3.198 10 O -1.020 7.020 11 O -1.013 7.013 12 N -0.871 5.871 13 C -0.022 4.022 14 C 0.052 3.948 15 F -0.181 7.181 16 C -0.196 4.196 17 C -0.165 4.165 18 C -0.184 4.184 19 H 0.102 0.898 20 H 0.252 0.748 21 H 0.089 0.911 22 H 0.120 0.880 23 H 0.126 0.874 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.078 -9.300 -5.509 14.779 hybrid contribution -0.753 0.211 0.765 1.094 sum 9.325 -9.089 -4.744 13.859 Atomic orbital electron populations 1.70015 1.07532 1.30542 1.40320 1.25193 0.95653 1.01558 0.88520 0.87452 0.82777 0.82566 0.82775 1.15805 1.14346 1.15204 1.30984 1.18083 1.01701 1.66518 0.87686 1.00401 0.75635 0.71369 0.72407 1.93438 1.85244 1.77390 1.45933 1.93374 1.84665 1.77256 1.45981 1.54941 1.73843 1.30097 1.28211 1.21908 1.00052 0.90739 0.89461 1.22384 0.99155 0.92168 0.81132 1.92800 1.97371 1.83399 1.44547 1.23702 0.94014 1.00269 1.01620 1.22858 0.95044 0.95998 1.02618 1.23597 0.98805 0.99090 0.96958 0.89797 0.74780 0.91137 0.87964 0.87351 0.90251 0.89484 0.88343 0.89408 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.58 13.96 21.45 0.30 -49.28 15 2 C 0.11 6.19 5.47 84.65 0.46 6.65 15 3 Si 0.83 41.00 26.54 68.60 1.82 42.82 15 4 H -0.23 -11.14 7.11 99.48 0.71 -10.44 15 5 H -0.22 -9.70 7.11 99.48 0.71 -8.99 15 6 H -0.23 -11.71 5.61 99.48 0.56 -11.15 15 7 C -1.04 -58.69 10.26 67.73 0.69 -57.99 15 8 H 0.10 6.07 8.06 -2.91 -0.02 6.05 15 9 S 2.70 133.36 4.24 -56.49 -0.24 133.12 15 10 O -1.03 -55.23 16.02 -128.00 -2.05 -57.28 15 11 O -1.02 -52.50 16.31 -128.00 -2.09 -54.59 15 12 N -1.11 -42.43 5.96 -187.48 -1.12 -43.55 15 13 C 0.11 3.36 5.90 86.38 0.51 3.87 15 14 C 0.07 1.82 1.71 -10.27 -0.02 1.80 15 15 F -0.20 -5.89 16.70 44.97 0.75 -5.14 15 16 C -0.16 -3.28 7.54 31.18 0.24 -3.04 15 17 C -0.13 -2.01 8.07 31.18 0.25 -1.76 15 18 C -0.15 -2.67 7.54 31.12 0.23 -2.43 15 19 H 0.29 15.20 8.31 -92.71 -0.77 14.43 15 20 H 0.42 14.40 8.24 -96.75 -0.80 13.60 15 21 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.10 3.10 7.59 -2.39 -0.02 3.08 15 23 H 0.11 2.13 7.99 -2.39 -0.02 2.11 15 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 15 27 H 0.09 1.51 8.14 -2.38 -0.02 1.49 15 28 H 0.12 1.80 8.10 -2.39 -0.02 1.78 15 Total: -1.00 -68.48 255.01 -0.03 -68.50 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.23 Total: 18.30 kcal Atomic # 6 Polarization: -55.28 SS G_CDS: 2.37 Total: -52.91 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -0.82 Total: -92.83 kcal Atomic # 8 Polarization: -107.74 SS G_CDS: -4.14 Total: -111.87 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.75 Total: -5.14 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.82 Total: 42.82 kcal Atomic # 16 Polarization: 133.36 SS G_CDS: -0.24 Total: 133.12 kcal Total: -68.48 -0.03 -68.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393539733.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.357 kcal (2) G-P(sol) polarization free energy of solvation -68.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds