Wall clock time and date at job start Sun Mar 29 2020 21:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47134 * 88.07891 * 3 2 1 5 5 C 1.52999 * 109.46965 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46926 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47036 * 179.97438 * 6 5 4 8 8 C 1.46847 * 110.99862 * 66.05037 * 7 6 5 9 9 C 1.53044 * 109.51335 * 174.15436 * 8 7 6 10 10 C 1.53119 * 109.27589 * 59.18419 * 9 8 7 11 11 C 1.53120 * 109.16202 * 302.34077 * 10 9 8 12 12 H 1.08996 * 109.50004 * 297.72216 * 11 10 9 13 13 C 1.50697 * 109.50290 * 177.63586 * 11 10 9 14 14 H 1.07997 * 120.00495 * 240.00286 * 13 11 10 15 15 C 1.37880 * 119.99487 * 60.00267 * 13 11 10 16 16 N 1.31518 * 120.00428 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99610 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46967 * 60.00324 * 17 15 13 19 19 H 1.48503 * 109.46839 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47286 * 300.00184 * 17 15 13 21 21 C 1.46847 * 110.99299 * 301.84195 * 7 6 5 22 22 H 1.08999 * 109.47469 * 328.08024 * 3 2 1 23 23 H 1.08997 * 109.47031 * 208.07383 * 3 2 1 24 24 H 1.08999 * 109.46834 * 59.99744 * 4 3 2 25 25 H 1.08996 * 109.46703 * 300.00220 * 4 3 2 26 26 H 1.08999 * 109.47343 * 60.00314 * 5 4 3 27 27 H 1.08997 * 109.47101 * 300.00074 * 5 4 3 28 28 H 1.09004 * 109.47161 * 60.00228 * 6 5 4 29 29 H 1.08996 * 109.47358 * 300.00580 * 6 5 4 30 30 H 1.09002 * 109.46448 * 54.14158 * 8 7 6 31 31 H 1.08994 * 109.45958 * 294.16523 * 8 7 6 32 32 H 1.09000 * 109.49745 * 179.12223 * 9 8 7 33 33 H 1.08999 * 109.49729 * 299.20033 * 9 8 7 34 34 H 1.08993 * 109.52284 * 62.25342 * 10 9 8 35 35 H 1.09003 * 109.51690 * 182.37761 * 10 9 8 36 36 H 0.97001 * 119.99568 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.46836 * 65.83946 * 21 7 6 38 38 H 1.08995 * 109.45748 * 305.85482 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0475 -1.4418 5 6 4.6480 -0.0461 -1.4417 6 6 5.1580 -0.0949 -2.8834 7 7 6.6270 -0.0930 -2.8834 8 6 7.1549 -1.3254 -2.2843 9 6 8.6778 -1.3544 -2.4326 10 6 9.2769 -0.1292 -1.7367 11 6 8.6744 1.1397 -2.3462 12 1 8.9374 1.1962 -3.4025 13 6 9.2152 2.3489 -1.6276 14 1 8.5404 3.0219 -1.1197 15 6 10.5717 2.5958 -1.6185 16 7 11.3935 1.7765 -2.2375 17 14 11.2421 4.0951 -0.7283 18 1 10.8817 4.0187 0.7102 19 1 12.7201 4.1335 -0.8675 20 1 10.6574 5.3250 -1.3205 21 6 7.1516 1.0964 -2.2005 22 1 2.9718 -0.8714 0.5433 23 1 2.9709 0.9075 0.4836 24 1 2.7543 0.8246 -1.9851 25 1 2.7551 -0.9543 -1.9254 26 1 5.0122 -0.9180 -0.8983 27 1 5.0106 0.8609 -0.9582 28 1 4.7940 0.7768 -3.4273 29 1 4.7954 -1.0021 -3.3666 30 1 6.7241 -2.1891 -2.7910 31 1 6.8923 -1.3565 -1.2269 32 1 9.0708 -2.2618 -1.9741 33 1 8.9407 -1.3378 -3.4903 34 1 9.0470 -0.1664 -0.6719 35 1 10.3579 -0.1235 -1.8760 36 1 12.3478 1.9506 -2.2313 37 1 6.8891 1.0537 -1.1433 38 1 6.7185 1.9917 -2.6464 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397659517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:58 Heat of formation + Delta-G solvation = -15.497716 kcal Electronic energy + Delta-G solvation = -16623.013760 eV Core-core repulsion = 14077.576522 eV Total energy + Delta-G solvation = -2545.437238 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.01754 -37.99405 -36.37114 -34.86755 -33.24018 -31.59311 -29.65434 -26.86425 -25.82133 -23.36646 -22.98276 -22.02599 -19.87145 -18.43786 -18.19101 -16.80488 -16.59452 -16.09247 -15.64558 -15.24171 -14.91206 -14.70238 -14.68822 -14.16333 -13.89795 -13.83109 -13.35207 -13.07763 -12.82739 -12.80380 -12.62290 -12.46829 -12.25230 -12.04724 -11.89626 -11.71736 -11.63257 -11.29167 -11.15563 -10.76167 -10.57710 -10.31558 -8.89368 -8.02902 -6.16941 1.45190 1.46173 1.53540 1.81421 1.85949 2.46894 3.10571 3.24156 3.33398 4.05034 4.10914 4.30479 4.37314 4.41711 4.48218 4.55485 4.75236 4.79455 4.79959 4.85816 4.92181 4.99988 5.04518 5.11129 5.18209 5.27680 5.29132 5.39437 5.51120 5.56041 5.61864 5.69677 6.05698 6.22710 6.31170 6.54775 6.55972 6.64860 6.97690 7.51160 9.01335 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.028462 B = 0.005073 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.520970 B = 5518.059710 C = 6220.268867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.238 3.762 3 C -0.024 4.024 4 C -0.102 4.102 5 C -0.151 4.151 6 C 0.053 3.947 7 N -0.556 5.556 8 C 0.067 3.933 9 C -0.114 4.114 10 C -0.103 4.103 11 C 0.049 3.951 12 H -0.011 1.011 13 C -0.534 4.534 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.952 3.048 18 H -0.269 1.269 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.083 3.917 22 H 0.133 0.867 23 H 0.126 0.874 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.259 0.741 37 H 0.030 0.970 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.524 -6.071 3.059 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.078 4.078 3 C -0.064 4.064 4 C -0.141 4.141 5 C -0.190 4.190 6 C -0.074 4.074 7 N -0.279 5.279 8 C -0.061 4.061 9 C -0.152 4.152 10 C -0.141 4.141 11 C 0.030 3.970 12 H 0.007 0.993 13 C -0.573 4.573 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.778 3.222 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.045 4.045 22 H 0.151 0.849 23 H 0.144 0.856 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.876 -6.082 2.524 14.462 hybrid contribution 0.978 0.947 1.062 1.727 sum -11.898 -5.135 3.587 13.446 Atomic orbital electron populations 1.81254 1.15266 1.11545 1.10844 1.29922 0.95869 0.90920 0.91117 1.19606 0.78727 1.07846 1.00182 1.21374 0.94606 1.03620 0.94545 1.22176 0.95398 1.02890 0.98575 1.22284 0.86005 1.02922 0.96219 1.62099 1.07878 1.02504 1.55418 1.22017 0.94426 0.92232 0.97433 1.21617 0.95806 0.97889 0.99916 1.21442 1.01173 0.94809 0.96722 1.18618 0.90929 0.93184 0.94267 0.99271 1.21544 0.92439 1.09681 1.33589 0.92767 1.25724 0.97542 0.99075 0.96254 1.70045 1.03201 1.38221 1.44255 0.85713 0.76955 0.80217 0.79358 1.19439 1.21298 1.19759 1.21935 0.95858 0.91406 0.95265 0.84936 0.85631 0.91260 0.90386 0.90816 0.91992 0.91287 0.89648 0.89605 0.94345 0.91473 0.93778 0.95569 0.92940 0.93229 0.95157 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.77 18.54 20.01 0.37 -12.40 16 2 C 0.24 4.13 15.43 89.44 1.38 5.51 16 3 C -0.02 -0.22 5.70 28.79 0.16 -0.06 16 4 C -0.10 -1.22 5.17 30.60 0.16 -1.06 16 5 C -0.15 -2.61 4.52 30.59 0.14 -2.47 16 6 C 0.05 1.21 5.36 86.30 0.46 1.67 16 7 N -0.56 -17.90 4.86 -896.35 -4.35 -22.25 16 8 C 0.07 1.97 5.05 86.33 0.44 2.41 16 9 C -0.11 -4.19 6.09 30.65 0.19 -4.01 16 10 C -0.10 -4.80 5.02 30.67 0.15 -4.65 16 11 C 0.05 2.42 2.26 -11.49 -0.03 2.40 16 12 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 13 C -0.53 -28.95 8.57 25.60 0.22 -28.73 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 15 C 0.01 0.69 5.30 84.65 0.45 1.14 16 16 N -0.92 -53.17 11.35 21.45 0.24 -52.93 16 17 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C 0.08 3.23 4.06 86.33 0.35 3.58 16 22 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 1.21 6.68 -2.39 -0.02 1.19 16 27 H 0.06 1.25 6.50 -2.39 -0.02 1.24 16 28 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.09 1.63 8.06 -2.39 -0.02 1.61 16 30 H 0.09 2.08 8.06 -2.39 -0.02 2.06 16 31 H 0.04 1.06 6.76 -2.39 -0.02 1.05 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 2.82 6.15 -2.39 -0.01 2.80 16 36 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.03 1.13 6.61 -2.38 -0.02 1.12 16 38 H 0.05 2.03 8.12 -2.39 -0.02 2.01 16 Total: -1.00 -65.97 304.42 3.38 -62.59 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.02 Total: 4.20 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.07 Total: -24.28 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -3.74 Total: -87.57 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -65.97 3.38 -62.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397659517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.092 kcal (2) G-P(sol) polarization free energy of solvation -65.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds