Wall clock time and date at job start Sun Mar 29 2020 21:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47408 * 323.92439 * 3 2 1 5 5 C 1.53001 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47409 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47268 * 180.02562 * 6 5 4 8 8 C 1.46854 * 110.99665 * 293.95495 * 7 6 5 9 9 C 1.53037 * 109.51886 * 185.84309 * 8 7 6 10 10 C 1.53126 * 109.27801 * 300.81620 * 9 8 7 11 11 C 1.53124 * 109.15878 * 57.65645 * 10 9 8 12 12 H 1.08999 * 109.50059 * 62.28737 * 11 10 9 13 13 C 1.50696 * 109.50007 * 182.40592 * 11 10 9 14 14 H 1.07997 * 120.00077 * 120.00524 * 13 11 10 15 15 C 1.37872 * 120.00039 * 299.99707 * 13 11 10 16 16 N 1.31516 * 120.00157 * 180.02562 * 15 13 11 17 17 Si 1.86802 * 120.00148 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47149 * 89.99426 * 17 15 13 19 19 H 1.48504 * 109.47101 * 209.99746 * 17 15 13 20 20 H 1.48493 * 109.47009 * 329.99562 * 17 15 13 21 21 C 1.46844 * 111.00090 * 58.16171 * 7 6 5 22 22 H 1.08999 * 109.47037 * 203.92296 * 3 2 1 23 23 H 1.09004 * 109.47135 * 83.92725 * 3 2 1 24 24 H 1.08999 * 109.47139 * 59.99919 * 4 3 2 25 25 H 1.09004 * 109.47207 * 300.00242 * 4 3 2 26 26 H 1.08999 * 109.47199 * 59.99757 * 5 4 3 27 27 H 1.09004 * 109.46972 * 300.00187 * 5 4 3 28 28 H 1.08998 * 109.46651 * 59.99512 * 6 5 4 29 29 H 1.09003 * 109.46734 * 300.00278 * 6 5 4 30 30 H 1.08994 * 109.46310 * 65.82535 * 8 7 6 31 31 H 1.09004 * 109.45281 * 305.84691 * 8 7 6 32 32 H 1.09000 * 109.50480 * 180.88135 * 9 8 7 33 33 H 1.09002 * 109.53848 * 60.77851 * 9 8 7 34 34 H 1.08998 * 109.52297 * 177.56592 * 10 9 8 35 35 H 1.08999 * 109.51925 * 297.75795 * 10 9 8 36 36 H 0.96998 * 120.00706 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.46133 * 294.17882 * 21 7 6 38 38 H 1.09002 * 109.46165 * 54.15521 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.1650 0.8494 5 6 4.6486 -1.1639 0.8499 6 6 5.1592 -2.3299 1.6988 7 7 6.6282 -2.3285 1.6998 8 6 7.1555 -2.6149 0.3594 9 6 8.6785 -2.7493 0.4271 10 6 9.2776 -1.4464 0.9641 11 6 8.6757 -1.1459 2.3396 12 1 8.9393 -1.9435 3.0343 13 6 9.2158 0.1653 2.8495 14 1 8.5404 0.9793 3.0676 15 6 10.5722 0.3257 3.0377 16 7 11.0435 1.4699 3.4832 17 14 11.7405 -1.0820 2.6601 18 1 12.1783 -0.9956 1.2438 19 1 12.9255 -0.9943 3.5508 20 1 11.0465 -2.3753 2.8856 21 6 7.1529 -1.0581 2.2165 22 1 2.9709 0.9402 0.4167 23 1 2.9714 -0.1079 -1.0219 24 1 2.7557 -2.1045 0.4327 25 1 2.7552 -1.0564 1.8713 26 1 5.0112 -0.2243 1.2669 27 1 5.0124 -1.2722 -0.1719 28 1 4.7966 -3.2692 1.2814 29 1 4.7954 -2.2220 2.7206 30 1 6.8924 -1.8008 -0.3159 31 1 6.7248 -3.5460 -0.0088 32 1 9.0712 -2.9463 -0.5704 33 1 8.9426 -3.5722 1.0913 34 1 10.3586 -1.5528 1.0548 35 1 9.0471 -0.6302 0.2795 36 1 11.9977 1.5830 3.6153 37 1 6.8897 -0.2513 1.5324 38 1 6.7203 -0.8584 3.1969 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397659519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:00 Heat of formation + Delta-G solvation = 9.662321 kcal Electronic energy + Delta-G solvation = -16694.821442 eV Core-core repulsion = 14150.475225 eV Total energy + Delta-G solvation = -2544.346217 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.89498 -37.19973 -35.32741 -33.40419 -32.03986 -30.29839 -28.87831 -25.07480 -24.85767 -22.45999 -21.49183 -20.86122 -18.61049 -17.59010 -16.70052 -16.00918 -15.58839 -14.62855 -14.45080 -14.09690 -14.00299 -13.63676 -13.44966 -12.94560 -12.90517 -12.56190 -12.34174 -12.10622 -11.92210 -11.44570 -11.36835 -11.22215 -11.13098 -11.05807 -10.66966 -10.28864 -10.06438 -9.92223 -9.66838 -9.10283 -8.92543 -8.50940 -7.77006 -6.06655 -4.05730 2.54771 2.58208 3.28772 3.40488 3.43734 3.75899 4.40688 4.43085 4.69616 4.70913 5.05869 5.15749 5.25132 5.33124 5.43985 5.47705 5.57916 5.59419 5.69781 5.82270 5.89023 5.94413 6.10692 6.17208 6.25536 6.32090 6.35971 6.50626 6.62276 6.81538 6.84435 7.21734 7.35208 7.41503 7.62313 7.66383 7.87568 8.52393 8.96477 9.56534 11.06580 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.037241 B = 0.005070 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.685626 B = 5521.548908 C = 5994.227990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.210 3.790 3 C -0.029 4.029 4 C -0.110 4.110 5 C -0.162 4.162 6 C 0.057 3.943 7 N -0.541 5.541 8 C 0.062 3.938 9 C -0.121 4.121 10 C -0.122 4.122 11 C 0.018 3.982 12 H 0.034 0.966 13 C -0.514 4.514 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.903 5.903 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.299 1.299 20 H -0.263 1.263 21 C 0.075 3.925 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.263 0.737 37 H 0.031 0.969 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 -6.870 -7.500 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.108 4.108 3 C -0.069 4.069 4 C -0.149 4.149 5 C -0.201 4.201 6 C -0.072 4.072 7 N -0.264 5.264 8 C -0.066 4.066 9 C -0.159 4.159 10 C -0.160 4.160 11 C -0.001 4.001 12 H 0.052 0.948 13 C -0.552 4.552 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.227 1.227 20 H -0.188 1.188 21 C -0.052 4.052 22 H 0.129 0.871 23 H 0.126 0.874 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.826 -7.146 -7.126 15.547 hybrid contribution 0.974 0.089 -0.807 1.268 sum -10.852 -7.057 -7.933 15.182 Atomic orbital electron populations 1.81226 1.13247 1.08934 1.09056 1.29386 0.95473 0.92969 0.92944 1.19419 0.81123 1.02509 1.03898 1.21480 0.96425 0.96930 1.00107 1.22330 0.94019 1.01867 1.01878 1.22177 0.88394 0.96837 0.99797 1.62214 1.05525 1.35469 1.23195 1.21995 0.95782 0.99211 0.89647 1.21668 0.94461 0.99809 0.99972 1.22020 0.98961 0.95120 0.99858 1.19172 0.90641 0.97787 0.92479 0.94791 1.21004 0.92852 0.97754 1.43593 0.90975 1.24985 0.98265 0.95368 0.94501 1.69897 1.13705 1.24233 1.46289 0.86828 0.80187 0.83835 0.77310 1.20762 1.22689 1.18817 1.22107 0.97352 0.87330 0.98425 0.87150 0.87414 0.91248 0.90972 0.90573 0.91464 0.91453 0.90884 0.95090 0.92046 0.92912 0.91920 0.93650 0.92593 0.92710 0.95067 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.74 18.54 42.16 0.78 -4.96 16 2 C 0.21 2.01 15.43 -20.76 -0.32 1.69 16 3 C -0.03 -0.18 5.70 -29.52 -0.17 -0.35 16 4 C -0.11 -0.79 5.17 -26.73 -0.14 -0.93 16 5 C -0.16 -1.54 4.52 -26.73 -0.12 -1.67 16 6 C 0.06 0.66 5.36 -3.83 -0.02 0.64 16 7 N -0.54 -8.46 4.86 -234.67 -1.14 -9.60 16 8 C 0.06 0.90 5.05 -3.83 -0.02 0.88 16 9 C -0.12 -2.03 6.09 -26.65 -0.16 -2.19 16 10 C -0.12 -2.54 4.73 -26.60 -0.13 -2.66 16 11 C 0.02 0.42 1.85 -91.69 -0.17 0.25 16 12 H 0.03 0.82 7.21 -51.93 -0.37 0.45 16 13 C -0.51 -13.97 9.15 -34.44 -0.31 -14.28 16 14 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 15 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 16 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 17 Si 0.89 21.79 24.35 -169.99 -4.14 17.65 16 18 H -0.28 -6.70 6.89 56.52 0.39 -6.31 16 19 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 21 C 0.07 1.39 4.06 -3.84 -0.02 1.38 16 22 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.83 6.50 -51.93 -0.34 0.49 16 27 H 0.07 0.63 6.68 -51.93 -0.35 0.29 16 28 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.43 6.75 -51.93 -0.35 0.08 16 31 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 1.01 3.34 -51.93 -0.17 0.84 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.03 0.57 6.61 -51.93 -0.34 0.23 16 38 H 0.07 1.25 8.12 -51.93 -0.42 0.82 16 LS Contribution 297.57 15.07 4.48 4.48 Total: -1.00 -31.13 297.57 -7.08 -38.21 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -6.17 Total: -3.93 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.67 Total: -15.37 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.41 Total: -41.05 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.13 -7.08 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397659519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.875 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds