Wall clock time and date at job start Sun Mar 29 2020 21:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47408 * 323.92439 * 3 2 1 5 5 C 1.53001 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47409 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47268 * 180.02562 * 6 5 4 8 8 C 1.46854 * 110.99665 * 293.95495 * 7 6 5 9 9 C 1.53037 * 109.51886 * 185.84309 * 8 7 6 10 10 C 1.53126 * 109.27801 * 300.81620 * 9 8 7 11 11 C 1.53124 * 109.15878 * 57.65645 * 10 9 8 12 12 H 1.08999 * 109.50059 * 62.28737 * 11 10 9 13 13 C 1.50696 * 109.50007 * 182.40592 * 11 10 9 14 14 H 1.07997 * 120.00077 * 120.00524 * 13 11 10 15 15 C 1.37872 * 120.00039 * 299.99707 * 13 11 10 16 16 N 1.31516 * 120.00157 * 180.02562 * 15 13 11 17 17 Si 1.86802 * 120.00148 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47149 * 89.99426 * 17 15 13 19 19 H 1.48504 * 109.47101 * 209.99746 * 17 15 13 20 20 H 1.48493 * 109.47009 * 329.99562 * 17 15 13 21 21 C 1.46844 * 111.00090 * 58.16171 * 7 6 5 22 22 H 1.08999 * 109.47037 * 203.92296 * 3 2 1 23 23 H 1.09004 * 109.47135 * 83.92725 * 3 2 1 24 24 H 1.08999 * 109.47139 * 59.99919 * 4 3 2 25 25 H 1.09004 * 109.47207 * 300.00242 * 4 3 2 26 26 H 1.08999 * 109.47199 * 59.99757 * 5 4 3 27 27 H 1.09004 * 109.46972 * 300.00187 * 5 4 3 28 28 H 1.08998 * 109.46651 * 59.99512 * 6 5 4 29 29 H 1.09003 * 109.46734 * 300.00278 * 6 5 4 30 30 H 1.08994 * 109.46310 * 65.82535 * 8 7 6 31 31 H 1.09004 * 109.45281 * 305.84691 * 8 7 6 32 32 H 1.09000 * 109.50480 * 180.88135 * 9 8 7 33 33 H 1.09002 * 109.53848 * 60.77851 * 9 8 7 34 34 H 1.08998 * 109.52297 * 177.56592 * 10 9 8 35 35 H 1.08999 * 109.51925 * 297.75795 * 10 9 8 36 36 H 0.96998 * 120.00706 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.46133 * 294.17882 * 21 7 6 38 38 H 1.09002 * 109.46165 * 54.15521 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.1650 0.8494 5 6 4.6486 -1.1639 0.8499 6 6 5.1592 -2.3299 1.6988 7 7 6.6282 -2.3285 1.6998 8 6 7.1555 -2.6149 0.3594 9 6 8.6785 -2.7493 0.4271 10 6 9.2776 -1.4464 0.9641 11 6 8.6757 -1.1459 2.3396 12 1 8.9393 -1.9435 3.0343 13 6 9.2158 0.1653 2.8495 14 1 8.5404 0.9793 3.0676 15 6 10.5722 0.3257 3.0377 16 7 11.0435 1.4699 3.4832 17 14 11.7405 -1.0820 2.6601 18 1 12.1783 -0.9956 1.2438 19 1 12.9255 -0.9943 3.5508 20 1 11.0465 -2.3753 2.8856 21 6 7.1529 -1.0581 2.2165 22 1 2.9709 0.9402 0.4167 23 1 2.9714 -0.1079 -1.0219 24 1 2.7557 -2.1045 0.4327 25 1 2.7552 -1.0564 1.8713 26 1 5.0112 -0.2243 1.2669 27 1 5.0124 -1.2722 -0.1719 28 1 4.7966 -3.2692 1.2814 29 1 4.7954 -2.2220 2.7206 30 1 6.8924 -1.8008 -0.3159 31 1 6.7248 -3.5460 -0.0088 32 1 9.0712 -2.9463 -0.5704 33 1 8.9426 -3.5722 1.0913 34 1 10.3586 -1.5528 1.0548 35 1 9.0471 -0.6302 0.2795 36 1 11.9977 1.5830 3.6153 37 1 6.8897 -0.2513 1.5324 38 1 6.7203 -0.8584 3.1969 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397659519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:00 Heat of formation + Delta-G solvation = -10.984252 kcal Electronic energy + Delta-G solvation = -16695.716745 eV Core-core repulsion = 14150.475225 eV Total energy + Delta-G solvation = -2545.241519 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15208 -38.01581 -36.45926 -34.87064 -33.57361 -31.92073 -29.80112 -26.85454 -26.02245 -23.47554 -22.82857 -22.10634 -19.99569 -18.78618 -18.26277 -17.13230 -16.65253 -15.86158 -15.78703 -15.42683 -14.96637 -14.93760 -14.74985 -14.51257 -13.95936 -13.91595 -13.62635 -13.10477 -12.99186 -12.89381 -12.60306 -12.31225 -12.27134 -12.06464 -11.82964 -11.76178 -11.71440 -11.31562 -11.17887 -10.92115 -10.72540 -10.54911 -8.95123 -8.26515 -6.29004 1.32414 1.39270 1.49986 1.81015 1.85439 2.36209 3.09333 3.10039 3.26583 4.01661 4.09893 4.17829 4.22359 4.31276 4.43679 4.48085 4.62167 4.72024 4.76470 4.79881 4.87825 4.89033 4.99545 5.01418 5.06417 5.15725 5.24177 5.25403 5.30663 5.45563 5.55011 5.55675 5.70516 5.81844 6.26791 6.42607 6.49277 6.64397 6.79640 7.37039 8.90233 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.037241 B = 0.005070 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.685626 B = 5521.548908 C = 5994.227990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.238 3.762 3 C -0.025 4.025 4 C -0.102 4.102 5 C -0.153 4.153 6 C 0.054 3.946 7 N -0.553 5.553 8 C 0.062 3.938 9 C -0.118 4.118 10 C -0.122 4.122 11 C 0.016 3.984 12 H 0.018 0.982 13 C -0.515 4.515 14 H 0.035 0.965 15 C 0.012 3.988 16 N -0.952 5.952 17 Si 0.950 3.050 18 H -0.267 1.267 19 H -0.303 1.303 20 H -0.250 1.250 21 C 0.089 3.911 22 H 0.123 0.877 23 H 0.134 0.866 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.051 0.949 36 H 0.264 0.736 37 H 0.031 0.969 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 -9.017 -9.411 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.079 4.079 3 C -0.064 4.064 4 C -0.142 4.142 5 C -0.192 4.192 6 C -0.073 4.073 7 N -0.276 5.276 8 C -0.066 4.066 9 C -0.155 4.155 10 C -0.159 4.159 11 C -0.003 4.003 12 H 0.036 0.964 13 C -0.553 4.553 14 H 0.054 0.946 15 C -0.184 4.184 16 N -0.592 5.592 17 Si 0.778 3.222 18 H -0.193 1.193 19 H -0.231 1.231 20 H -0.174 1.174 21 C -0.039 4.039 22 H 0.141 0.859 23 H 0.152 0.848 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.370 -9.311 -9.051 17.934 hybrid contribution 1.101 0.803 -0.168 1.373 sum -11.269 -8.508 -9.219 16.863 Atomic orbital electron populations 1.81257 1.15272 1.11066 1.11309 1.29928 0.95878 0.91065 0.90988 1.19612 0.78732 1.02741 1.05349 1.21374 0.94690 0.97836 1.00258 1.22195 0.95392 0.99987 1.01651 1.22278 0.85827 0.98831 1.00410 1.62125 1.08057 1.33158 1.24308 1.22067 0.94229 1.01137 0.89121 1.21657 0.96067 0.96789 1.01032 1.21911 0.98020 0.97588 0.98410 1.19109 0.93617 0.94342 0.93258 0.96397 1.21377 0.92446 0.98861 1.42659 0.94618 1.25820 1.00214 0.97765 0.94641 1.70046 1.14121 1.26603 1.48477 0.85818 0.77726 0.81105 0.77566 1.19337 1.23121 1.17421 1.21755 0.94608 0.89297 0.98256 0.85860 0.84840 0.90174 0.91392 0.92284 0.90524 0.89196 0.91308 0.94069 0.88881 0.90172 0.92449 0.95268 0.92992 0.92707 0.95081 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.73 18.54 20.01 0.37 -12.36 16 2 C 0.24 4.09 15.43 89.44 1.38 5.47 16 3 C -0.02 -0.23 5.70 28.79 0.16 -0.06 16 4 C -0.10 -1.14 5.17 30.59 0.16 -0.98 16 5 C -0.15 -2.43 4.52 30.59 0.14 -2.29 16 6 C 0.05 1.09 5.36 86.30 0.46 1.56 16 7 N -0.55 -15.78 4.86 -896.36 -4.35 -20.13 16 8 C 0.06 1.54 5.05 86.32 0.44 1.98 16 9 C -0.12 -3.52 6.09 30.65 0.19 -3.33 16 10 C -0.12 -4.84 4.73 30.68 0.15 -4.70 16 11 C 0.02 0.72 1.85 -11.49 -0.02 0.70 16 12 H 0.02 0.86 7.21 -2.39 -0.02 0.84 16 13 C -0.51 -28.79 9.15 25.60 0.23 -28.56 16 14 H 0.04 2.19 7.99 -2.91 -0.02 2.16 16 15 C 0.01 0.71 5.45 84.65 0.46 1.17 16 16 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 17 Si 0.95 45.30 24.35 68.60 1.67 46.97 16 18 H -0.27 -12.07 6.89 99.48 0.69 -11.38 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 20 H -0.25 -11.25 6.53 99.48 0.65 -10.60 16 21 C 0.09 3.24 4.06 86.33 0.35 3.59 16 22 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.13 0.65 8.14 -2.38 -0.02 0.64 16 24 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.06 1.16 6.50 -2.39 -0.02 1.15 16 27 H 0.08 1.10 6.68 -2.38 -0.02 1.09 16 28 H 0.09 1.46 8.06 -2.39 -0.02 1.44 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 0.96 6.75 -2.39 -0.02 0.95 16 31 H 0.09 1.81 8.06 -2.38 -0.02 1.79 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.03 1.24 3.34 -2.39 -0.01 1.24 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.03 1.12 6.61 -2.39 -0.02 1.11 16 38 H 0.05 2.04 8.12 -2.39 -0.02 2.03 16 Total: -1.00 -69.99 297.57 3.03 -66.96 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 0.95 Total: 3.03 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 4.10 Total: -25.47 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -3.68 Total: -91.50 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.67 Total: 46.97 kcal Total: -69.99 3.03 -66.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397659519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.979 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds