Wall clock time and date at job start Sun Mar 29 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46973 * 300.86281 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.46901 * 180.02562 * 5 4 3 7 7 C 1.46848 * 110.99958 * 294.20187 * 6 5 4 8 8 C 1.53034 * 109.52086 * 174.16220 * 7 6 5 9 9 C 1.53116 * 109.27766 * 59.18490 * 8 7 6 10 10 C 1.53007 * 109.57210 * 182.40558 * 9 8 7 11 11 C 1.50700 * 109.46978 * 294.71361 * 10 9 8 12 12 H 1.07994 * 120.00311 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99619 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99796 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00378 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47101 * 89.99994 * 15 13 11 17 17 H 1.48497 * 109.47161 * 209.99980 * 15 13 11 18 18 H 1.48507 * 109.46681 * 330.00182 * 15 13 11 19 19 C 1.53110 * 109.16138 * 302.34128 * 9 8 7 20 20 C 1.46852 * 110.99971 * 169.99744 * 6 5 4 21 21 H 1.09002 * 109.47120 * 180.86036 * 3 2 1 22 22 H 1.09001 * 109.46952 * 60.86174 * 3 2 1 23 23 H 1.09001 * 109.47194 * 299.99745 * 4 3 2 24 24 H 1.08992 * 109.47399 * 59.99917 * 4 3 2 25 25 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 26 26 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 27 27 H 1.09004 * 109.46425 * 294.18123 * 7 6 5 28 28 H 1.09002 * 109.45789 * 54.14490 * 7 6 5 29 29 H 1.08996 * 109.50601 * 299.24170 * 8 7 6 30 30 H 1.09006 * 109.50179 * 179.12409 * 8 7 6 31 31 H 1.08996 * 109.52466 * 62.24942 * 9 8 7 32 32 H 1.08992 * 109.47295 * 54.71378 * 10 9 8 33 33 H 1.09007 * 109.46806 * 174.71224 * 10 9 8 34 34 H 0.97003 * 120.00013 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.50668 * 297.71376 * 19 9 8 36 36 H 1.08999 * 109.50680 * 177.60089 * 19 9 8 37 37 H 1.08999 * 109.46052 * 305.85601 * 20 6 5 38 38 H 1.09001 * 109.46352 * 65.82479 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7391 1.2383 5 6 4.6483 -0.7379 1.2386 6 7 5.1382 -1.4487 2.4271 7 6 4.7829 -0.7269 3.6557 8 6 5.1790 -1.5646 4.8736 9 6 6.6860 -1.8323 4.8345 10 6 7.0798 -2.7198 6.0171 11 6 6.8483 -1.9723 7.3050 12 1 6.4596 -0.9650 7.2824 13 6 7.1336 -2.5742 8.5122 14 7 6.9321 -1.9217 9.6362 15 14 7.8066 -4.3163 8.5514 16 1 9.2903 -4.2751 8.5040 17 1 7.3698 -4.9877 9.8019 18 1 7.2946 -5.0711 7.3794 19 6 7.0367 -2.5414 3.5236 20 6 6.5868 -1.6755 2.3448 21 1 2.9709 1.0284 0.0154 22 1 2.9715 -0.4996 -0.8976 23 1 2.7547 -0.2389 2.1359 24 1 2.7554 -1.7667 1.2228 25 1 5.0122 -1.2379 0.3410 26 1 5.0109 0.2900 1.2542 27 1 5.3114 0.2261 3.6828 28 1 3.7081 -0.5465 3.6728 29 1 4.6405 -2.5120 4.8544 30 1 4.9293 -1.0218 5.7853 31 1 7.2256 -0.8871 4.8930 32 1 6.4741 -3.6258 6.0090 33 1 8.1336 -2.9865 5.9362 34 1 7.1325 -2.3453 10.4855 35 1 6.5274 -3.5043 3.4831 36 1 8.1143 -2.6967 3.4708 37 1 6.8221 -2.1841 1.4099 38 1 7.1068 -0.7181 2.3782 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399307162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:21 Heat of formation + Delta-G solvation = 2.241983 kcal Electronic energy + Delta-G solvation = -16385.060066 eV Core-core repulsion = 13840.392080 eV Total energy + Delta-G solvation = -2544.667987 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.01120 -37.16766 -35.33135 -33.29256 -31.95383 -30.45143 -28.82960 -26.38101 -23.62329 -22.92360 -21.31755 -20.39149 -19.01879 -17.84600 -16.69417 -15.95933 -15.54854 -14.79322 -14.38412 -14.27687 -13.86188 -13.58818 -13.32063 -13.15944 -12.83020 -12.76321 -12.24749 -11.98353 -11.82440 -11.63772 -11.57574 -11.25504 -10.92442 -10.83766 -10.72412 -10.50545 -10.15449 -9.69708 -9.57634 -9.25357 -8.98784 -8.50006 -8.16939 -6.01018 -3.97911 2.51315 2.55650 3.32835 3.40610 3.44855 3.65856 4.06043 4.48482 4.65821 4.86048 4.93129 5.13795 5.23024 5.27935 5.32224 5.36337 5.47669 5.52960 5.67262 5.80272 5.80682 5.93827 5.97990 6.07943 6.18375 6.34637 6.48234 6.57182 6.86379 6.96364 7.05256 7.23802 7.27830 7.33646 7.35771 7.53124 7.84513 8.58059 9.04186 9.62403 11.12416 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040295 B = 0.004362 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.702008 B = 6417.798734 C = 6781.433483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.208 3.792 3 C -0.025 4.025 4 C -0.116 4.116 5 C 0.056 3.944 6 N -0.538 5.538 7 C 0.052 3.948 8 C -0.102 4.102 9 C -0.073 4.073 10 C -0.009 4.009 11 C -0.514 4.514 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.906 5.906 15 Si 0.878 3.122 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.265 1.265 19 C -0.115 4.115 20 C 0.061 3.939 21 H 0.107 0.893 22 H 0.109 0.891 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.016 0.984 33 H 0.009 0.991 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 2.364 -19.076 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.109 4.109 3 C -0.066 4.066 4 C -0.155 4.155 5 C -0.072 4.072 6 N -0.263 5.263 7 C -0.075 4.075 8 C -0.139 4.139 9 C -0.092 4.092 10 C -0.046 4.046 11 C -0.552 4.552 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.706 3.294 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.153 4.153 20 C -0.067 4.067 21 H 0.125 0.875 22 H 0.127 0.873 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.348 1.892 -18.866 19.453 hybrid contribution 1.245 -0.083 0.210 1.265 sum -3.104 1.809 -18.656 18.999 Atomic orbital electron populations 1.81241 1.13216 1.08854 1.08630 1.29259 0.95384 0.93127 0.93177 1.19293 0.81453 1.04170 1.01645 1.21586 0.95909 1.01738 0.96296 1.22033 0.94011 0.96959 0.94219 1.61927 1.14306 1.48321 1.01773 1.22270 0.99968 0.95222 0.90052 1.21554 0.96548 0.99985 0.95859 1.21048 0.95309 0.98956 0.93862 1.19610 0.95630 0.95552 0.93828 1.21160 1.43049 1.02009 0.88995 0.90984 1.25037 0.95257 0.97625 0.95690 1.69917 1.49470 1.37603 0.97541 0.86802 0.79468 0.85621 0.77525 1.20449 1.21531 1.18972 1.21727 0.99973 0.99213 0.94401 1.22071 0.86791 0.98660 0.99174 0.87463 0.87315 0.90766 0.90066 0.90648 0.94708 0.95252 0.91216 0.91934 0.90436 0.92478 0.96569 0.97256 0.92859 0.91618 0.92145 0.91537 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.56 18.54 42.15 0.78 -4.78 16 2 C 0.21 1.87 15.43 -20.76 -0.32 1.55 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.12 -0.85 5.10 -26.73 -0.14 -0.99 16 5 C 0.06 0.47 4.96 -3.82 -0.02 0.45 16 6 N -0.54 -6.62 4.66 -234.66 -1.09 -7.72 16 7 C 0.05 0.73 5.29 -3.83 -0.02 0.71 16 8 C -0.10 -1.81 5.15 -26.65 -0.14 -1.95 16 9 C -0.07 -1.39 2.20 -90.50 -0.20 -1.59 16 10 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 11 C -0.51 -14.34 9.00 -34.44 -0.31 -14.65 16 12 H 0.07 2.15 7.33 -52.49 -0.38 1.76 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -27.86 13.96 55.43 0.77 -27.08 16 15 Si 0.88 21.74 27.47 -169.99 -4.67 17.08 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 19 C -0.12 -1.79 5.38 -26.66 -0.14 -1.93 16 20 C 0.06 0.77 5.46 -3.83 -0.02 0.74 16 21 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.52 7.99 -51.93 -0.41 0.11 16 26 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.88 6.21 -51.93 -0.32 0.56 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 1.55 7.06 -51.93 -0.37 1.18 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 33 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.71 8.01 -51.93 -0.42 0.30 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 305.55 15.07 4.60 4.60 Total: -1.00 -32.16 305.55 -7.67 -39.83 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -6.40 Total: -5.46 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.67 Total: -16.47 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.46 Total: -39.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.16 -7.67 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399307162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.075 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds