Wall clock time and date at job start Sun Mar 29 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46973 * 300.86281 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.46901 * 180.02562 * 5 4 3 7 7 C 1.46848 * 110.99958 * 294.20187 * 6 5 4 8 8 C 1.53034 * 109.52086 * 174.16220 * 7 6 5 9 9 C 1.53116 * 109.27766 * 59.18490 * 8 7 6 10 10 C 1.53007 * 109.57210 * 182.40558 * 9 8 7 11 11 C 1.50700 * 109.46978 * 294.71361 * 10 9 8 12 12 H 1.07994 * 120.00311 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99619 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99796 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00378 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47101 * 89.99994 * 15 13 11 17 17 H 1.48497 * 109.47161 * 209.99980 * 15 13 11 18 18 H 1.48507 * 109.46681 * 330.00182 * 15 13 11 19 19 C 1.53110 * 109.16138 * 302.34128 * 9 8 7 20 20 C 1.46852 * 110.99971 * 169.99744 * 6 5 4 21 21 H 1.09002 * 109.47120 * 180.86036 * 3 2 1 22 22 H 1.09001 * 109.46952 * 60.86174 * 3 2 1 23 23 H 1.09001 * 109.47194 * 299.99745 * 4 3 2 24 24 H 1.08992 * 109.47399 * 59.99917 * 4 3 2 25 25 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 26 26 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 27 27 H 1.09004 * 109.46425 * 294.18123 * 7 6 5 28 28 H 1.09002 * 109.45789 * 54.14490 * 7 6 5 29 29 H 1.08996 * 109.50601 * 299.24170 * 8 7 6 30 30 H 1.09006 * 109.50179 * 179.12409 * 8 7 6 31 31 H 1.08996 * 109.52466 * 62.24942 * 9 8 7 32 32 H 1.08992 * 109.47295 * 54.71378 * 10 9 8 33 33 H 1.09007 * 109.46806 * 174.71224 * 10 9 8 34 34 H 0.97003 * 120.00013 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.50668 * 297.71376 * 19 9 8 36 36 H 1.08999 * 109.50680 * 177.60089 * 19 9 8 37 37 H 1.08999 * 109.46052 * 305.85601 * 20 6 5 38 38 H 1.09001 * 109.46352 * 65.82479 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7391 1.2383 5 6 4.6483 -0.7379 1.2386 6 7 5.1382 -1.4487 2.4271 7 6 4.7829 -0.7269 3.6557 8 6 5.1790 -1.5646 4.8736 9 6 6.6860 -1.8323 4.8345 10 6 7.0798 -2.7198 6.0171 11 6 6.8483 -1.9723 7.3050 12 1 6.4596 -0.9650 7.2824 13 6 7.1336 -2.5742 8.5122 14 7 6.9321 -1.9217 9.6362 15 14 7.8066 -4.3163 8.5514 16 1 9.2903 -4.2751 8.5040 17 1 7.3698 -4.9877 9.8019 18 1 7.2946 -5.0711 7.3794 19 6 7.0367 -2.5414 3.5236 20 6 6.5868 -1.6755 2.3448 21 1 2.9709 1.0284 0.0154 22 1 2.9715 -0.4996 -0.8976 23 1 2.7547 -0.2389 2.1359 24 1 2.7554 -1.7667 1.2228 25 1 5.0122 -1.2379 0.3410 26 1 5.0109 0.2900 1.2542 27 1 5.3114 0.2261 3.6828 28 1 3.7081 -0.5465 3.6728 29 1 4.6405 -2.5120 4.8544 30 1 4.9293 -1.0218 5.7853 31 1 7.2256 -0.8871 4.8930 32 1 6.4741 -3.6258 6.0090 33 1 8.1336 -2.9865 5.9362 34 1 7.1325 -2.3453 10.4855 35 1 6.5274 -3.5043 3.4831 36 1 8.1143 -2.6967 3.4708 37 1 6.8221 -2.1841 1.4099 38 1 7.1068 -0.7181 2.3782 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399307162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:21 Heat of formation + Delta-G solvation = -18.623206 kcal Electronic energy + Delta-G solvation = -16385.964849 eV Core-core repulsion = 13840.392080 eV Total energy + Delta-G solvation = -2545.572769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.09895 -37.94514 -36.52275 -34.77677 -33.47744 -31.63071 -30.34766 -27.46418 -25.06422 -24.12793 -22.44775 -21.58133 -20.42608 -18.86036 -18.45125 -16.59972 -16.53098 -16.30111 -15.69077 -15.24630 -15.16014 -14.80842 -14.57711 -14.33095 -14.22089 -13.76097 -13.66198 -13.32057 -13.00805 -12.70804 -12.53851 -12.41279 -12.15716 -12.10156 -11.95675 -11.82118 -11.62211 -11.46377 -11.15552 -10.84684 -10.74503 -10.67021 -9.09660 -8.25525 -6.27516 1.36107 1.38413 1.50380 1.83318 1.89761 2.38602 2.99197 3.10066 3.29649 4.03069 4.08139 4.10785 4.23948 4.34224 4.40482 4.50809 4.64462 4.70811 4.75504 4.81102 4.87779 4.89857 4.95687 5.05237 5.10318 5.16716 5.29677 5.32862 5.38247 5.45219 5.47398 5.57041 5.75084 5.79524 6.27051 6.34915 6.40189 6.69401 6.80092 7.36376 8.91220 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040295 B = 0.004362 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.702008 B = 6417.798734 C = 6781.433483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.236 3.764 3 C -0.016 4.016 4 C -0.112 4.112 5 C 0.057 3.943 6 N -0.549 5.549 7 C 0.064 3.936 8 C -0.099 4.099 9 C -0.072 4.072 10 C -0.007 4.007 11 C -0.518 4.518 12 H 0.033 0.967 13 C 0.000 4.000 14 N -0.955 5.955 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.287 1.287 18 H -0.248 1.248 19 C -0.110 4.110 20 C 0.065 3.935 21 H 0.135 0.865 22 H 0.143 0.857 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 1.422 -22.118 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.080 4.080 3 C -0.056 4.056 4 C -0.152 4.152 5 C -0.071 4.071 6 N -0.275 5.275 7 C -0.064 4.064 8 C -0.137 4.137 9 C -0.090 4.090 10 C -0.044 4.044 11 C -0.557 4.557 12 H 0.052 0.948 13 C -0.196 4.196 14 N -0.596 5.596 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.213 1.213 18 H -0.172 1.172 19 C -0.148 4.148 20 C -0.062 4.062 21 H 0.153 0.847 22 H 0.161 0.839 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.120 0.880 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.189 0.957 -21.940 22.191 hybrid contribution 0.890 0.285 1.188 1.512 sum -2.299 1.242 -20.751 20.915 Atomic orbital electron populations 1.81269 1.15634 1.11437 1.11067 1.30036 0.96084 0.90913 0.91008 1.19531 0.78389 1.05917 1.01720 1.21496 0.95500 1.01302 0.96864 1.22152 0.94164 0.97612 0.93131 1.61885 1.14309 1.48991 1.02266 1.22047 1.00647 0.94256 0.89450 1.21439 0.95898 0.99780 0.96620 1.20976 0.95750 0.97867 0.94441 1.19583 0.95765 0.95643 0.93411 1.21496 1.41935 1.00890 0.91335 0.94829 1.26012 0.95837 1.02519 0.95209 1.70076 1.51331 1.39863 0.98338 0.85688 0.79193 0.79866 0.78073 1.19207 1.21288 1.17161 1.21653 1.00657 0.99130 0.93357 1.22042 0.86890 0.98441 0.98864 0.84679 0.83904 0.92352 0.91149 0.87994 0.93412 0.95367 0.90044 0.92828 0.94118 0.93823 0.96769 0.96767 0.92739 0.91944 0.91250 0.88444 0.94985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.77 18.54 20.01 0.37 -12.40 16 2 C 0.24 3.77 15.43 89.44 1.38 5.15 16 3 C -0.02 -0.09 5.70 28.79 0.16 0.08 16 4 C -0.11 -1.27 5.10 30.59 0.16 -1.12 16 5 C 0.06 0.69 4.96 86.30 0.43 1.12 16 6 N -0.55 -11.81 4.66 -896.34 -4.17 -15.98 16 7 C 0.06 1.70 5.29 86.32 0.46 2.16 16 8 C -0.10 -3.61 5.15 30.64 0.16 -3.46 16 9 C -0.07 -2.72 2.20 -10.72 -0.02 -2.74 16 10 C -0.01 -0.31 3.52 29.85 0.11 -0.21 16 11 C -0.52 -29.96 9.00 25.60 0.23 -29.73 16 12 H 0.03 2.13 7.33 -2.91 -0.02 2.11 16 13 C 0.00 0.01 5.47 84.65 0.46 0.47 16 14 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 15 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 18 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 19 C -0.11 -3.16 5.38 30.64 0.16 -3.00 16 20 C 0.07 1.40 5.46 86.32 0.47 1.87 16 21 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 22 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 23 H 0.06 0.86 6.43 -2.39 -0.02 0.84 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 0.79 7.99 -2.39 -0.02 0.77 16 26 H 0.05 0.51 8.12 -2.39 -0.02 0.49 16 27 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.08 1.98 6.21 -2.39 -0.01 1.96 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.04 1.73 7.06 -2.38 -0.02 1.71 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 33 H 0.01 0.64 7.57 -2.38 -0.02 0.63 16 34 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 1.57 8.01 -2.39 -0.02 1.55 16 38 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -73.81 305.55 3.49 -70.31 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: 0.96 Total: 0.99 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 4.15 Total: -29.38 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -3.50 Total: -88.77 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -73.81 3.49 -70.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399307162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.690 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds