Wall clock time and date at job start Sun Mar 29 2020 21:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.28853 * 2 1 4 4 C 1.54378 * 110.32440 * 122.12220 * 2 1 3 5 5 N 1.48563 * 104.59731 * 142.75287 * 4 2 1 6 6 C 1.46898 * 111.00365 * 200.96420 * 5 4 2 7 7 C 1.52997 * 109.47386 * 169.99764 * 6 5 4 8 8 H 1.09001 * 109.46832 * 304.99869 * 7 6 5 9 9 C 1.47206 * 109.47168 * 64.99626 * 7 6 5 10 10 N 5.78962 * 157.64331 * 161.19261 * 2 1 3 11 11 C 1.52997 * 109.47232 * 184.99670 * 7 6 5 12 12 C 1.50697 * 109.47050 * 174.99758 * 11 7 6 13 13 H 1.08007 * 120.00134 * 0.02562 * 12 11 7 14 14 C 1.37882 * 119.99937 * 179.97438 * 12 11 7 15 15 N 1.31509 * 119.99960 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99815 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47402 * 59.99796 * 16 14 12 18 18 H 1.48503 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47024 * 299.99706 * 16 14 12 20 20 C 1.48564 * 104.21763 * 320.51784 * 5 4 2 21 21 C 1.54258 * 110.32779 * 237.76041 * 2 1 3 22 22 H 1.09004 * 110.32323 * 122.20277 * 21 2 1 23 23 C 1.53004 * 110.32235 * 0.10280 * 21 2 1 24 24 H 1.09005 * 109.47560 * 299.32618 * 1 2 3 25 25 H 1.08998 * 109.46994 * 59.33320 * 1 2 3 26 26 H 1.09003 * 109.46632 * 179.32756 * 1 2 3 27 27 H 1.09000 * 110.41518 * 23.97386 * 4 2 1 28 28 H 1.08999 * 110.51569 * 261.58037 * 4 2 1 29 29 H 1.09004 * 109.47163 * 49.99303 * 6 5 4 30 30 H 1.09002 * 109.46852 * 289.99850 * 6 5 4 31 31 H 1.08994 * 109.47510 * 294.99830 * 11 7 6 32 32 H 1.09000 * 109.46818 * 55.00071 * 11 7 6 33 33 H 0.97005 * 119.99650 * 179.97438 * 15 14 12 34 34 H 1.09007 * 110.41028 * 158.25954 * 20 5 4 35 35 H 1.09002 * 110.41392 * 280.70206 * 20 5 4 36 36 H 1.09005 * 109.46979 * 59.99857 * 23 21 2 37 37 H 1.08996 * 109.46897 * 179.97438 * 23 21 2 38 38 H 1.08998 * 109.46781 * 299.99911 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0661 -0.7698 1.2261 5 7 3.2694 -1.4820 0.7241 6 6 3.6069 -2.6201 1.5895 7 6 4.6851 -3.4711 0.9157 8 1 4.3471 -3.7658 -0.0778 9 6 5.9265 -2.6885 0.7996 10 7 6.8844 -2.0846 0.7100 11 6 4.9474 -4.7217 1.7571 12 6 5.9182 -5.6192 1.0338 13 1 6.3094 -5.3266 0.0705 14 6 6.3080 -6.8133 1.6023 15 7 5.8321 -7.1694 2.7754 16 14 7.5119 -7.9254 0.7060 17 1 8.7883 -7.1988 0.4872 18 1 7.7665 -9.1394 1.5226 19 1 6.9374 -8.3226 -0.6045 20 6 2.8807 -1.9427 -0.6338 21 6 2.0658 -0.7717 -1.2235 22 1 2.7081 -0.1285 -1.8251 23 6 0.9050 -1.3012 -2.0679 24 1 -0.3634 0.5033 0.8960 25 1 -0.3633 0.5241 -0.8839 26 1 -0.3633 -1.0277 -0.0121 27 1 1.3229 -1.4833 1.5819 28 1 2.3390 -0.0774 2.0224 29 1 2.7165 -3.2265 1.7559 30 1 3.9794 -2.2516 2.5453 31 1 5.3693 -4.4306 2.7190 32 1 4.0103 -5.2547 1.9176 33 1 6.1061 -8.0097 3.1752 34 1 3.7672 -2.1319 -1.2393 35 1 2.2649 -2.8398 -0.5691 36 1 0.2961 -0.4656 -2.4132 37 1 1.2988 -1.8430 -2.9278 38 1 0.2931 -1.9718 -1.4645 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437103547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:38 Heat of formation + Delta-G solvation = 9.311052 kcal Electronic energy + Delta-G solvation = -16784.654706 eV Core-core repulsion = 14240.293257 eV Total energy + Delta-G solvation = -2544.361449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.59646 -36.61027 -34.39468 -33.26024 -31.37205 -30.74783 -27.54262 -25.91413 -25.19897 -22.89949 -21.74055 -20.96529 -18.95905 -16.63388 -16.44134 -16.36218 -15.15664 -14.58913 -14.32873 -14.14177 -14.02746 -13.27666 -12.96048 -12.53057 -12.41324 -12.17921 -12.15180 -11.92127 -11.67824 -11.55795 -11.26325 -11.12877 -11.00208 -10.72758 -10.64711 -10.56943 -10.52036 -10.30037 -10.13240 -9.52125 -9.22929 -8.45306 -8.29064 -6.09219 -4.12489 3.31362 3.35596 3.39430 3.74251 3.83479 4.12408 4.41558 4.55475 4.59063 4.85237 4.95079 5.15929 5.28795 5.31154 5.36739 5.41209 5.48105 5.55495 5.64192 5.70800 5.78085 5.79667 5.85860 5.88508 6.00894 6.10658 6.16914 6.22518 6.34210 6.43421 6.48408 6.98743 7.19506 7.42379 7.53181 7.85669 8.23448 8.58911 8.91829 9.52882 11.01671 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.035878 B = 0.005247 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.229710 B = 5335.006916 C = 5397.355807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.075 0.925 4 C 0.036 3.964 5 N -0.514 5.514 6 C 0.052 3.948 7 C 0.007 3.993 8 H 0.099 0.901 9 C 0.254 3.746 10 N -0.478 5.478 11 C 0.032 3.968 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.033 3.967 21 C -0.094 4.094 22 H 0.076 0.924 23 C -0.145 4.145 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.026 0.974 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.189 10.810 -5.508 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.094 0.906 4 C -0.092 4.092 5 N -0.238 5.238 6 C -0.077 4.077 7 C -0.014 4.014 8 H 0.117 0.883 9 C -0.063 4.063 10 N -0.154 5.154 11 C -0.007 4.007 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.095 4.095 21 C -0.113 4.113 22 H 0.094 0.906 23 C -0.203 4.203 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.251 11.913 -5.503 17.286 hybrid contribution -0.288 -1.546 -0.283 1.598 sum -11.540 10.367 -5.786 16.557 Atomic orbital electron populations 1.21946 0.94982 1.01943 1.01375 1.21900 0.95252 0.99591 0.94451 0.90607 1.23188 0.91350 0.97435 0.97197 1.65468 1.32557 1.23428 1.02343 1.22415 0.97675 0.90790 0.96840 1.19285 0.85107 0.94231 1.02825 0.88272 1.28849 0.94000 0.91432 0.91976 1.80974 1.12163 1.12337 1.09964 1.19168 0.98203 0.88575 0.94732 1.21100 1.26554 1.03878 1.04969 0.92589 1.24947 0.96237 0.97844 0.94868 1.69929 1.43967 1.23076 1.16066 0.86653 0.81747 0.79959 0.79720 1.20196 1.21168 1.20063 1.23237 0.98903 0.96304 0.91033 1.21911 0.96536 0.96756 0.96074 0.90584 1.21946 0.97891 1.00872 0.99547 0.92990 0.92432 0.92252 0.93581 0.90461 0.92752 0.90046 0.95527 0.94501 0.92738 0.90124 0.93085 0.92465 0.92775 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 7.92 37.15 0.29 -0.89 16 2 C -0.09 -0.94 3.65 -89.24 -0.33 -1.26 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.04 0.42 6.04 -2.18 -0.01 0.41 16 5 N -0.51 -7.34 5.19 -229.97 -1.19 -8.54 16 6 C 0.05 0.81 4.42 -3.83 -0.02 0.79 16 7 C 0.01 0.14 1.95 -93.41 -0.18 -0.04 16 8 H 0.10 1.78 6.56 -51.93 -0.34 1.44 16 9 C 0.25 5.48 13.67 -20.76 -0.28 5.19 16 10 N -0.48 -11.13 18.54 42.15 0.78 -10.35 16 11 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 12 C -0.53 -14.17 8.60 -34.44 -0.30 -14.46 16 13 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.03 0.43 4.65 -2.18 -0.01 0.42 16 21 C -0.09 -1.00 3.65 -89.24 -0.33 -1.32 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 23 C -0.15 -1.28 7.94 37.16 0.30 -0.99 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.42 6.97 -51.93 -0.36 0.06 16 26 H 0.06 0.49 6.62 -51.93 -0.34 0.15 16 27 H 0.05 0.51 7.54 -51.93 -0.39 0.12 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.78 7.88 -51.93 -0.41 0.38 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.08 1.13 7.56 -51.92 -0.39 0.73 16 35 H 0.05 0.64 7.69 -51.93 -0.40 0.24 16 36 H 0.06 0.44 6.88 -51.93 -0.36 0.09 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.52 6.68 -51.93 -0.35 0.17 16 LS Contribution 305.65 15.07 4.61 4.61 Total: -1.00 -29.83 305.65 -7.43 -37.26 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -6.26 Total: -4.57 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -1.08 Total: -9.87 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.32 Total: -43.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.83 -7.43 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437103547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.573 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds