Wall clock time and date at job start Sun Mar 29 2020 21:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.28853 * 2 1 4 4 C 1.54378 * 110.32440 * 122.12220 * 2 1 3 5 5 N 1.48563 * 104.59731 * 142.75287 * 4 2 1 6 6 C 1.46898 * 111.00365 * 200.96420 * 5 4 2 7 7 C 1.52997 * 109.47386 * 169.99764 * 6 5 4 8 8 H 1.09001 * 109.46832 * 304.99869 * 7 6 5 9 9 C 1.47206 * 109.47168 * 64.99626 * 7 6 5 10 10 N 5.78962 * 157.64331 * 161.19261 * 2 1 3 11 11 C 1.52997 * 109.47232 * 184.99670 * 7 6 5 12 12 C 1.50697 * 109.47050 * 174.99758 * 11 7 6 13 13 H 1.08007 * 120.00134 * 0.02562 * 12 11 7 14 14 C 1.37882 * 119.99937 * 179.97438 * 12 11 7 15 15 N 1.31509 * 119.99960 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99815 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47402 * 59.99796 * 16 14 12 18 18 H 1.48503 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47024 * 299.99706 * 16 14 12 20 20 C 1.48564 * 104.21763 * 320.51784 * 5 4 2 21 21 C 1.54258 * 110.32779 * 237.76041 * 2 1 3 22 22 H 1.09004 * 110.32323 * 122.20277 * 21 2 1 23 23 C 1.53004 * 110.32235 * 0.10280 * 21 2 1 24 24 H 1.09005 * 109.47560 * 299.32618 * 1 2 3 25 25 H 1.08998 * 109.46994 * 59.33320 * 1 2 3 26 26 H 1.09003 * 109.46632 * 179.32756 * 1 2 3 27 27 H 1.09000 * 110.41518 * 23.97386 * 4 2 1 28 28 H 1.08999 * 110.51569 * 261.58037 * 4 2 1 29 29 H 1.09004 * 109.47163 * 49.99303 * 6 5 4 30 30 H 1.09002 * 109.46852 * 289.99850 * 6 5 4 31 31 H 1.08994 * 109.47510 * 294.99830 * 11 7 6 32 32 H 1.09000 * 109.46818 * 55.00071 * 11 7 6 33 33 H 0.97005 * 119.99650 * 179.97438 * 15 14 12 34 34 H 1.09007 * 110.41028 * 158.25954 * 20 5 4 35 35 H 1.09002 * 110.41392 * 280.70206 * 20 5 4 36 36 H 1.09005 * 109.46979 * 59.99857 * 23 21 2 37 37 H 1.08996 * 109.46897 * 179.97438 * 23 21 2 38 38 H 1.08998 * 109.46781 * 299.99911 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0661 -0.7698 1.2261 5 7 3.2694 -1.4820 0.7241 6 6 3.6069 -2.6201 1.5895 7 6 4.6851 -3.4711 0.9157 8 1 4.3471 -3.7658 -0.0778 9 6 5.9265 -2.6885 0.7996 10 7 6.8844 -2.0846 0.7100 11 6 4.9474 -4.7217 1.7571 12 6 5.9182 -5.6192 1.0338 13 1 6.3094 -5.3266 0.0705 14 6 6.3080 -6.8133 1.6023 15 7 5.8321 -7.1694 2.7754 16 14 7.5119 -7.9254 0.7060 17 1 8.7883 -7.1988 0.4872 18 1 7.7665 -9.1394 1.5226 19 1 6.9374 -8.3226 -0.6045 20 6 2.8807 -1.9427 -0.6338 21 6 2.0658 -0.7717 -1.2235 22 1 2.7081 -0.1285 -1.8251 23 6 0.9050 -1.3012 -2.0679 24 1 -0.3634 0.5033 0.8960 25 1 -0.3633 0.5241 -0.8839 26 1 -0.3633 -1.0277 -0.0121 27 1 1.3229 -1.4833 1.5819 28 1 2.3390 -0.0774 2.0224 29 1 2.7165 -3.2265 1.7559 30 1 3.9794 -2.2516 2.5453 31 1 5.3693 -4.4306 2.7190 32 1 4.0103 -5.2547 1.9176 33 1 6.1061 -8.0097 3.1752 34 1 3.7672 -2.1319 -1.2393 35 1 2.2649 -2.8398 -0.5691 36 1 0.2961 -0.4656 -2.4132 37 1 1.2988 -1.8430 -2.9278 38 1 0.2931 -1.9718 -1.4645 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437103547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:38 Heat of formation + Delta-G solvation = -8.341543 kcal Electronic energy + Delta-G solvation = -16785.420180 eV Core-core repulsion = 14240.293257 eV Total energy + Delta-G solvation = -2545.126923 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60191 -38.16872 -35.91235 -35.00014 -32.97527 -31.57994 -29.02962 -26.96503 -26.38748 -24.19247 -23.48740 -22.04462 -19.83018 -18.52506 -18.06171 -17.33253 -16.68000 -16.17781 -15.53322 -15.20878 -14.79385 -14.77722 -14.43520 -14.16620 -13.81288 -13.53447 -13.25597 -13.09941 -13.01339 -12.89630 -12.63555 -12.50812 -12.45153 -12.26505 -12.14919 -11.83981 -11.56591 -11.41365 -11.27234 -11.15297 -11.05695 -10.56212 -9.36954 -8.20558 -6.29356 1.40475 1.42343 1.49486 2.00796 2.08021 2.40752 3.04298 3.14919 3.31284 3.68227 3.71649 4.04595 4.16169 4.30077 4.35810 4.55612 4.61302 4.66401 4.70010 4.71880 4.82663 4.82908 4.88863 4.95343 5.00206 5.07047 5.22267 5.34403 5.35729 5.43167 5.46954 5.57359 5.60733 5.76524 5.98304 6.05359 6.20344 6.79631 6.88265 7.39279 8.90234 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.035878 B = 0.005247 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.229710 B = 5335.006916 C = 5397.355807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.075 0.925 4 C 0.035 3.965 5 N -0.532 5.532 6 C 0.062 3.938 7 C 0.019 3.981 8 H 0.114 0.886 9 C 0.264 3.736 10 N -0.511 5.511 11 C 0.039 3.961 12 C -0.542 4.542 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.949 3.051 17 H -0.281 1.281 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.029 3.971 21 C -0.091 4.091 22 H 0.070 0.930 23 C -0.140 4.140 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.001 0.999 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.528 11.121 -6.452 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.092 4.092 5 N -0.256 5.256 6 C -0.067 4.067 7 C -0.003 4.003 8 H 0.132 0.868 9 C -0.052 4.052 10 N -0.188 5.188 11 C 0.000 4.000 12 C -0.580 4.580 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.562 5.562 16 Si 0.775 3.225 17 H -0.207 1.207 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.099 4.099 21 C -0.110 4.110 22 H 0.089 0.911 23 C -0.198 4.198 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.020 0.980 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.602 12.233 -6.459 18.713 hybrid contribution 0.132 -1.612 0.021 1.618 sum -12.470 10.621 -6.438 17.600 Atomic orbital electron populations 1.21908 0.93226 1.02303 1.02291 1.21891 0.96635 0.99077 0.93214 0.90699 1.23269 0.90501 0.97500 0.97978 1.65433 1.34491 1.22831 1.02814 1.22243 0.96910 0.91161 0.96414 1.19230 0.85152 0.92803 1.03080 0.86809 1.29331 0.94036 0.90889 0.90960 1.80967 1.13116 1.13583 1.11152 1.18988 0.97138 0.89955 0.93918 1.21499 1.26961 1.04480 1.05032 0.92896 1.25710 0.97894 0.99388 0.95612 1.70024 1.45278 1.23631 1.17309 0.85742 0.79347 0.78254 0.79205 1.20701 1.20572 1.18690 1.23282 0.98724 0.97587 0.90266 1.21896 0.96855 0.95836 0.96432 0.91142 1.21915 0.97263 1.01412 0.99185 0.92338 0.91312 0.92136 0.92714 0.90396 0.91178 0.90575 0.98025 0.94667 0.92637 0.91684 0.92559 0.91014 0.92839 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.92 71.98 0.57 -1.31 16 2 C -0.09 -1.60 3.65 -9.90 -0.04 -1.63 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.04 0.75 6.04 86.45 0.52 1.27 16 5 N -0.53 -14.53 5.19 -881.48 -4.57 -19.10 16 6 C 0.06 1.88 4.42 86.30 0.38 2.26 16 7 C 0.02 0.72 1.95 -12.60 -0.02 0.69 16 8 H 0.11 3.97 6.56 -2.39 -0.02 3.96 16 9 C 0.26 11.37 13.67 89.44 1.22 12.59 16 10 N -0.51 -23.90 18.54 20.01 0.37 -23.53 16 11 C 0.04 1.83 4.42 29.85 0.13 1.96 16 12 C -0.54 -29.11 8.60 25.60 0.22 -28.89 16 13 H 0.05 2.82 7.59 -2.91 -0.02 2.79 16 14 C 0.01 0.72 5.46 84.66 0.46 1.19 16 15 N -0.92 -53.27 13.29 21.45 0.28 -52.99 16 16 Si 0.95 43.63 29.54 68.60 2.03 45.65 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 20 C 0.03 0.71 4.65 86.45 0.40 1.11 16 21 C -0.09 -1.77 3.65 -9.90 -0.04 -1.81 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 23 C -0.14 -2.14 7.94 71.98 0.57 -1.56 16 24 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.07 0.79 6.97 -2.39 -0.02 0.77 16 26 H 0.06 0.82 6.62 -2.39 -0.02 0.80 16 27 H 0.05 1.09 7.54 -2.39 -0.02 1.07 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.91 7.88 -2.39 -0.02 1.89 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 34 H 0.06 1.77 7.56 -2.38 -0.02 1.75 16 35 H 0.06 1.31 7.69 -2.39 -0.02 1.29 16 36 H 0.07 0.89 6.88 -2.38 -0.02 0.88 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.91 6.68 -2.39 -0.02 0.90 16 Total: -1.00 -62.72 305.65 3.51 -59.21 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.02 Total: 4.88 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.39 Total: -14.13 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -3.92 Total: -95.62 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -62.72 3.51 -59.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437103547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.866 kcal (2) G-P(sol) polarization free energy of solvation -62.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds