Wall clock time and date at job start Sun Mar 29 2020 21:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.35333 * 2 1 4 4 C 1.53995 * 110.30757 * 237.85809 * 2 1 3 5 5 N 1.47900 * 107.22641 * 242.40927 * 4 2 1 6 6 C 1.46893 * 111.00241 * 214.05845 * 5 4 2 7 7 C 1.52998 * 109.47521 * 170.00010 * 6 5 4 8 8 H 1.09001 * 109.46914 * 304.99718 * 7 6 5 9 9 C 1.47194 * 109.47146 * 64.99798 * 7 6 5 10 10 N 5.91847 * 110.34343 * 186.69307 * 2 1 3 11 11 C 1.53004 * 109.47430 * 185.00080 * 7 6 5 12 12 C 1.50691 * 109.47175 * 174.99903 * 11 7 6 13 13 H 1.07999 * 120.00408 * 359.97438 * 12 11 7 14 14 C 1.37876 * 120.00068 * 179.97438 * 12 11 7 15 15 N 1.31513 * 120.00330 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47358 * 89.99933 * 16 14 12 18 18 H 1.48503 * 109.47199 * 209.99447 * 16 14 12 19 19 H 1.48496 * 109.47355 * 330.00012 * 16 14 12 20 20 C 1.48535 * 105.81903 * 334.57303 * 5 4 2 21 21 C 1.54930 * 103.22755 * 39.20561 * 20 5 4 22 22 H 1.08998 * 110.72418 * 80.94776 * 21 20 5 23 23 C 1.53005 * 110.72382 * 204.22532 * 21 20 5 24 24 H 1.09000 * 109.47335 * 180.69012 * 1 2 3 25 25 H 1.09004 * 109.46997 * 300.68928 * 1 2 3 26 26 H 1.09004 * 109.46879 * 60.68792 * 1 2 3 27 27 H 1.09002 * 109.91760 * 122.95671 * 4 2 1 28 28 H 1.09002 * 109.91779 * 1.85775 * 4 2 1 29 29 H 1.09005 * 109.47157 * 290.00390 * 6 5 4 30 30 H 1.09003 * 109.47284 * 49.99946 * 6 5 4 31 31 H 1.09005 * 109.46865 * 295.00137 * 11 7 6 32 32 H 1.09004 * 109.47126 * 54.99803 * 11 7 6 33 33 H 0.96996 * 120.00473 * 180.02562 * 15 14 12 34 34 H 1.08995 * 110.66892 * 157.64404 * 20 5 4 35 35 H 1.09005 * 110.66636 * 280.60411 * 20 5 4 36 36 H 1.09008 * 109.46672 * 58.55103 * 23 21 20 37 37 H 1.09004 * 109.47363 * 178.54207 * 23 21 20 38 38 H 1.08998 * 109.47412 * 298.54876 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0645 -0.7684 -1.2229 5 7 2.8301 -1.9262 -0.7123 6 6 3.9715 -2.2292 -1.5860 7 6 4.8758 -3.2586 -0.9052 8 1 5.1672 -2.8917 0.0790 9 6 4.1487 -4.5301 -0.7593 10 7 3.5876 -5.5115 -0.6468 11 6 6.1268 -3.4813 -1.7574 12 6 7.0734 -4.4005 -1.0295 13 1 6.8094 -4.7870 -0.0562 14 6 8.2765 -4.7483 -1.6060 15 7 9.1029 -5.5502 -0.9706 16 14 8.7336 -4.0794 -3.2892 17 1 9.4642 -2.7963 -3.1303 18 1 9.6006 -5.0588 -3.9924 19 1 7.4995 -3.8512 -4.0830 20 6 3.2879 -1.5412 0.6472 21 6 2.0717 -0.7767 1.2275 22 1 1.3219 -1.4729 1.6030 23 6 2.5146 0.1897 2.3281 24 1 -0.3634 -1.0276 0.0124 25 1 -0.3633 0.5245 0.8838 26 1 -0.3633 0.5031 -0.8961 27 1 2.7162 -0.1226 -1.8114 28 1 1.2327 -1.1146 -1.8364 29 1 3.6084 -2.6331 -2.5311 30 1 4.5372 -1.3167 -1.7743 31 1 5.8430 -3.9312 -2.7088 32 1 6.6172 -2.5250 -1.9397 33 1 9.9495 -5.7945 -1.3760 34 1 3.5066 -2.4263 1.2445 35 1 4.1617 -0.8922 0.5895 36 1 3.2395 0.8952 1.9219 37 1 1.6484 0.7346 2.7034 38 1 2.9715 -0.3722 3.1427 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437103548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:40 Heat of formation + Delta-G solvation = 8.980121 kcal Electronic energy + Delta-G solvation = -16777.376599 eV Core-core repulsion = 14233.000800 eV Total energy + Delta-G solvation = -2544.375799 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.53731 -36.62796 -34.32871 -33.14126 -31.54319 -31.24030 -27.66468 -26.45208 -25.00355 -22.54468 -21.47331 -20.82585 -19.88551 -16.90202 -16.68693 -15.75824 -15.52688 -14.40345 -14.22319 -13.91630 -13.70834 -13.51331 -13.16553 -12.78437 -12.67992 -12.48962 -12.33554 -12.06120 -11.72947 -11.65323 -11.41481 -11.25767 -11.04288 -10.79869 -10.70723 -10.60735 -10.47444 -10.34626 -9.90132 -9.73349 -9.32040 -8.62003 -8.29491 -6.10862 -4.11527 3.25356 3.34512 3.35685 3.69639 3.77549 4.06539 4.38128 4.49810 4.55905 4.72828 4.82191 5.16469 5.23916 5.29332 5.30773 5.38735 5.45570 5.48555 5.58388 5.63988 5.67387 5.78553 5.88116 5.89119 5.92858 6.02054 6.11295 6.14295 6.25169 6.26860 6.33819 6.90601 6.98252 7.11649 7.14026 7.63540 8.40433 8.54495 8.92587 9.49006 11.02279 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034194 B = 0.005517 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.656465 B = 5074.032231 C = 5127.292140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.074 0.926 4 C 0.039 3.961 5 N -0.519 5.519 6 C 0.051 3.949 7 C 0.017 3.983 8 H 0.105 0.895 9 C 0.251 3.749 10 N -0.469 5.469 11 C -0.005 4.005 12 C -0.528 4.528 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.264 1.264 20 C 0.034 3.966 21 C -0.093 4.093 22 H 0.082 0.918 23 C -0.142 4.142 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.178 15.255 1.350 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.089 4.089 5 N -0.243 5.243 6 C -0.078 4.078 7 C -0.005 4.005 8 H 0.123 0.877 9 C -0.066 4.066 10 N -0.145 5.145 11 C -0.044 4.044 12 C -0.566 4.566 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.188 1.188 20 C -0.093 4.093 21 C -0.112 4.112 22 H 0.100 0.900 23 C -0.200 4.200 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.166 13.199 1.505 19.421 hybrid contribution 1.258 1.288 -0.999 2.059 sum -12.908 14.487 0.506 19.410 Atomic orbital electron populations 1.21808 0.94609 1.02082 1.01247 1.22144 0.96170 0.98882 0.94623 0.90804 1.22960 0.98142 0.91144 0.96644 1.64823 1.21461 1.35581 1.02400 1.22464 0.90660 0.97921 0.96748 1.19037 0.93746 0.85070 1.02649 0.87704 1.28685 0.91514 0.94068 0.92323 1.80999 1.12085 1.11898 1.09558 1.19644 0.91094 0.98116 0.95558 1.21020 1.01463 1.28488 1.05579 0.90799 1.24983 0.96152 0.94500 0.97423 1.69902 1.10125 1.35018 1.38459 0.86823 0.78913 0.79020 0.84853 1.20061 1.21269 1.18843 1.23357 0.96224 0.99219 0.90529 1.22231 0.97504 0.96802 0.94635 0.89996 1.21767 1.00999 0.98930 0.98309 0.92214 0.92860 0.92845 0.93748 0.90496 0.90070 0.92811 0.95607 0.95005 0.92556 0.89860 0.92987 0.92641 0.92724 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.90 37.16 0.33 -0.85 16 2 C -0.10 -0.94 3.19 -89.03 -0.28 -1.23 16 3 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 4 C 0.04 0.43 6.35 -2.75 -0.02 0.42 16 5 N -0.52 -7.07 5.10 -230.46 -1.17 -8.24 16 6 C 0.05 0.75 4.39 -3.83 -0.02 0.73 16 7 C 0.02 0.31 1.90 -93.41 -0.18 0.13 16 8 H 0.11 1.83 6.52 -51.93 -0.34 1.49 16 9 C 0.25 5.33 13.67 -20.76 -0.28 5.04 16 10 N -0.47 -10.87 18.54 42.16 0.78 -10.09 16 11 C -0.01 -0.11 3.49 -27.89 -0.10 -0.21 16 12 C -0.53 -14.32 9.15 -34.44 -0.32 -14.64 16 13 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 16 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 20 C 0.03 0.43 4.53 -1.90 -0.01 0.42 16 21 C -0.09 -0.96 3.21 -88.52 -0.28 -1.24 16 22 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 23 C -0.14 -1.24 9.17 37.16 0.34 -0.90 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.46 7.57 -51.93 -0.39 0.07 16 28 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.70 7.81 -51.93 -0.41 0.30 16 31 H 0.03 0.57 7.20 -51.93 -0.37 0.20 16 32 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.08 1.14 7.56 -51.93 -0.39 0.75 16 35 H 0.05 0.62 7.92 -51.93 -0.41 0.21 16 36 H 0.05 0.47 8.11 -51.92 -0.42 0.05 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -30.90 307.86 -7.02 -37.91 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.46 Total: -3.49 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.91 Total: -10.41 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.38 Total: -44.72 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.90 -7.02 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437103548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.895 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds