Wall clock time and date at job start Sun Mar 29 2020 21:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.35333 * 2 1 4 4 C 1.53995 * 110.30757 * 237.85809 * 2 1 3 5 5 N 1.47900 * 107.22641 * 242.40927 * 4 2 1 6 6 C 1.46893 * 111.00241 * 214.05845 * 5 4 2 7 7 C 1.52998 * 109.47521 * 170.00010 * 6 5 4 8 8 H 1.09001 * 109.46914 * 304.99718 * 7 6 5 9 9 C 1.47194 * 109.47146 * 64.99798 * 7 6 5 10 10 N 5.91847 * 110.34343 * 186.69307 * 2 1 3 11 11 C 1.53004 * 109.47430 * 185.00080 * 7 6 5 12 12 C 1.50691 * 109.47175 * 174.99903 * 11 7 6 13 13 H 1.07999 * 120.00408 * 359.97438 * 12 11 7 14 14 C 1.37876 * 120.00068 * 179.97438 * 12 11 7 15 15 N 1.31513 * 120.00330 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47358 * 89.99933 * 16 14 12 18 18 H 1.48503 * 109.47199 * 209.99447 * 16 14 12 19 19 H 1.48496 * 109.47355 * 330.00012 * 16 14 12 20 20 C 1.48535 * 105.81903 * 334.57303 * 5 4 2 21 21 C 1.54930 * 103.22755 * 39.20561 * 20 5 4 22 22 H 1.08998 * 110.72418 * 80.94776 * 21 20 5 23 23 C 1.53005 * 110.72382 * 204.22532 * 21 20 5 24 24 H 1.09000 * 109.47335 * 180.69012 * 1 2 3 25 25 H 1.09004 * 109.46997 * 300.68928 * 1 2 3 26 26 H 1.09004 * 109.46879 * 60.68792 * 1 2 3 27 27 H 1.09002 * 109.91760 * 122.95671 * 4 2 1 28 28 H 1.09002 * 109.91779 * 1.85775 * 4 2 1 29 29 H 1.09005 * 109.47157 * 290.00390 * 6 5 4 30 30 H 1.09003 * 109.47284 * 49.99946 * 6 5 4 31 31 H 1.09005 * 109.46865 * 295.00137 * 11 7 6 32 32 H 1.09004 * 109.47126 * 54.99803 * 11 7 6 33 33 H 0.96996 * 120.00473 * 180.02562 * 15 14 12 34 34 H 1.08995 * 110.66892 * 157.64404 * 20 5 4 35 35 H 1.09005 * 110.66636 * 280.60411 * 20 5 4 36 36 H 1.09008 * 109.46672 * 58.55103 * 23 21 20 37 37 H 1.09004 * 109.47363 * 178.54207 * 23 21 20 38 38 H 1.08998 * 109.47412 * 298.54876 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0645 -0.7684 -1.2229 5 7 2.8301 -1.9262 -0.7123 6 6 3.9715 -2.2292 -1.5860 7 6 4.8758 -3.2586 -0.9052 8 1 5.1672 -2.8917 0.0790 9 6 4.1487 -4.5301 -0.7593 10 7 3.5876 -5.5115 -0.6468 11 6 6.1268 -3.4813 -1.7574 12 6 7.0734 -4.4005 -1.0295 13 1 6.8094 -4.7870 -0.0562 14 6 8.2765 -4.7483 -1.6060 15 7 9.1029 -5.5502 -0.9706 16 14 8.7336 -4.0794 -3.2892 17 1 9.4642 -2.7963 -3.1303 18 1 9.6006 -5.0588 -3.9924 19 1 7.4995 -3.8512 -4.0830 20 6 3.2879 -1.5412 0.6472 21 6 2.0717 -0.7767 1.2275 22 1 1.3219 -1.4729 1.6030 23 6 2.5146 0.1897 2.3281 24 1 -0.3634 -1.0276 0.0124 25 1 -0.3633 0.5245 0.8838 26 1 -0.3633 0.5031 -0.8961 27 1 2.7162 -0.1226 -1.8114 28 1 1.2327 -1.1146 -1.8364 29 1 3.6084 -2.6331 -2.5311 30 1 4.5372 -1.3167 -1.7743 31 1 5.8430 -3.9312 -2.7088 32 1 6.6172 -2.5250 -1.9397 33 1 9.9495 -5.7945 -1.3760 34 1 3.5066 -2.4263 1.2445 35 1 4.1617 -0.8922 0.5895 36 1 3.2395 0.8952 1.9219 37 1 1.6484 0.7346 2.7034 38 1 2.9715 -0.3722 3.1427 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437103548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:39 Heat of formation + Delta-G solvation = -10.704182 kcal Electronic energy + Delta-G solvation = -16778.230174 eV Core-core repulsion = 14233.000800 eV Total energy + Delta-G solvation = -2545.229375 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50725 -38.13300 -35.85384 -34.84023 -33.07740 -32.08436 -29.20889 -27.30586 -26.21899 -23.63816 -23.27493 -21.80396 -20.69905 -18.93078 -18.20718 -16.78843 -16.69718 -16.03488 -15.36296 -15.11112 -14.97962 -14.54784 -14.40505 -14.26365 -13.96785 -13.70598 -13.55636 -13.26403 -13.13381 -12.87934 -12.83283 -12.42324 -12.24596 -12.20898 -11.98797 -11.66044 -11.63755 -11.44034 -11.36075 -11.29599 -11.12858 -10.73930 -9.27516 -8.25661 -6.31706 1.41588 1.45071 1.55369 2.00043 2.07567 2.40359 3.03121 3.11338 3.29298 3.66865 3.72823 3.93932 4.14244 4.30134 4.38454 4.49892 4.61137 4.65611 4.65904 4.70650 4.78309 4.80708 4.87722 4.94760 5.01924 5.14307 5.19644 5.22722 5.26223 5.33059 5.41514 5.43334 5.55153 5.61933 6.03734 6.11533 6.26075 6.75147 6.85599 7.32883 8.91377 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034194 B = 0.005517 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.656465 B = 5074.032231 C = 5127.292140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.089 0.911 4 C 0.038 3.962 5 N -0.539 5.539 6 C 0.061 3.939 7 C 0.022 3.978 8 H 0.111 0.889 9 C 0.261 3.739 10 N -0.512 5.512 11 C -0.002 4.002 12 C -0.533 4.533 13 H 0.027 0.973 14 C 0.004 3.996 15 N -0.954 5.954 16 Si 0.949 3.051 17 H -0.256 1.256 18 H -0.294 1.294 19 H -0.238 1.238 20 C 0.031 3.969 21 C -0.090 4.090 22 H 0.069 0.931 23 C -0.138 4.138 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.265 0.735 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.954 18.300 -0.248 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.107 0.893 4 C -0.089 4.089 5 N -0.263 5.263 6 C -0.068 4.068 7 C 0.001 3.999 8 H 0.129 0.871 9 C -0.055 4.055 10 N -0.190 5.190 11 C -0.041 4.041 12 C -0.571 4.571 13 H 0.046 0.954 14 C -0.192 4.192 15 N -0.594 5.594 16 Si 0.772 3.228 17 H -0.180 1.180 18 H -0.221 1.221 19 H -0.161 1.161 20 C -0.097 4.097 21 C -0.109 4.109 22 H 0.088 0.912 23 C -0.196 4.196 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.976 16.268 -0.086 22.112 hybrid contribution 1.470 0.284 -0.388 1.547 sum -13.506 16.551 -0.474 21.368 Atomic orbital electron populations 1.21780 0.93876 1.01500 1.02291 1.22144 0.96743 0.99152 0.93210 0.89284 1.23029 0.98010 0.90530 0.97370 1.64772 1.21303 1.37509 1.02742 1.22354 0.90698 0.97482 0.96305 1.19135 0.93128 0.84737 1.02948 0.87110 1.29393 0.90733 0.94300 0.91090 1.80988 1.13747 1.13231 1.10989 1.19589 0.91304 0.98009 0.95217 1.21371 1.02574 1.28867 1.04241 0.95425 1.26034 0.96111 0.94845 1.02245 1.70085 1.10954 1.37421 1.40957 0.85681 0.79476 0.78628 0.79058 1.18021 1.22073 1.16120 1.23367 0.97570 0.98708 0.90030 1.22199 0.96285 0.96864 0.95551 0.91222 1.21737 1.01648 0.98615 0.97582 0.93605 0.91893 0.91758 0.92391 0.90570 0.89843 0.90184 0.95394 0.91969 0.92597 0.92134 0.92148 0.91987 0.91441 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.90 71.98 0.64 -1.34 16 2 C -0.09 -1.51 3.19 -9.76 -0.03 -1.54 16 3 H 0.09 1.21 7.84 -2.39 -0.02 1.19 16 4 C 0.04 0.73 6.35 86.45 0.55 1.28 16 5 N -0.54 -13.63 5.10 -883.03 -4.50 -18.13 16 6 C 0.06 1.60 4.39 86.30 0.38 1.98 16 7 C 0.02 0.78 1.90 -12.60 -0.02 0.76 16 8 H 0.11 3.79 6.52 -2.39 -0.02 3.78 16 9 C 0.26 11.13 13.67 89.44 1.22 12.35 16 10 N -0.51 -24.23 18.54 20.01 0.37 -23.86 16 11 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 12 C -0.53 -29.17 9.15 25.60 0.23 -28.94 16 13 H 0.03 1.71 7.84 -2.91 -0.02 1.69 16 14 C 0.00 0.25 5.47 84.65 0.46 0.71 16 15 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 16 Si 0.95 41.66 27.47 68.60 1.88 43.54 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 18 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 19 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 20 C 0.03 0.73 4.53 86.65 0.39 1.12 16 21 C -0.09 -1.70 3.21 -9.44 -0.03 -1.73 16 22 H 0.07 1.48 7.87 -2.39 -0.02 1.46 16 23 C -0.14 -2.11 9.17 71.98 0.66 -1.45 16 24 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.97 7.57 -2.39 -0.02 0.95 16 28 H 0.08 1.48 7.68 -2.39 -0.02 1.46 16 29 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.08 1.73 7.81 -2.39 -0.02 1.71 16 31 H 0.03 1.16 7.20 -2.38 -0.02 1.14 16 32 H 0.06 2.25 7.57 -2.38 -0.02 2.23 16 33 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.06 1.68 7.56 -2.39 -0.02 1.66 16 35 H 0.06 1.31 7.92 -2.38 -0.02 1.29 16 36 H 0.06 0.87 8.11 -2.38 -0.02 0.85 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -68.56 307.86 3.57 -64.99 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.96 Total: 9.31 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.56 Total: -16.78 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.83 Total: -101.06 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.88 Total: 43.54 kcal Total: -68.56 3.57 -64.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437103548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.290 kcal (2) G-P(sol) polarization free energy of solvation -68.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds