Wall clock time and date at job start Sun Mar 29 2020 21:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36343 * 125.63520 * 2 1 4 4 C 1.34848 * 108.21469 * 180.02562 * 3 2 1 5 5 C 1.40891 * 107.42236 * 359.76945 * 4 3 2 6 6 C 1.34856 * 107.41241 * 0.38064 * 5 4 3 7 7 C 1.50704 * 125.88842 * 179.88807 * 6 5 4 8 8 N 1.46895 * 109.47030 * 94.68810 * 7 6 5 9 9 C 1.46906 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47454 * 300.00316 * 10 9 8 12 12 C 1.52997 * 109.46978 * 60.00394 * 10 9 8 13 13 C 1.50696 * 109.46999 * 179.97438 * 10 9 8 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00355 * 180.02562 * 13 10 9 16 16 N 1.31520 * 119.99521 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00556 * 180.02562 * 15 13 10 18 18 H 1.48492 * 109.47148 * 59.99955 * 17 15 13 19 19 H 1.48498 * 109.47295 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46848 * 299.99842 * 17 15 13 21 21 H 1.09005 * 109.46859 * 269.97423 * 1 2 3 22 22 H 1.08999 * 109.46930 * 29.97208 * 1 2 3 23 23 H 1.08996 * 109.47120 * 149.97477 * 1 2 3 24 24 H 1.07992 * 125.89272 * 359.97438 * 3 2 1 25 25 H 1.08006 * 126.28938 * 180.02562 * 4 3 2 26 26 H 1.07999 * 126.29437 * 180.23946 * 5 4 3 27 27 H 1.08996 * 109.46908 * 334.68628 * 7 6 5 28 28 H 1.09002 * 109.46622 * 214.68802 * 7 6 5 29 29 H 1.00899 * 111.00672 * 56.04735 * 8 7 6 30 30 H 1.08992 * 109.47459 * 299.99826 * 9 8 7 31 31 H 1.09004 * 109.47040 * 59.99976 * 9 8 7 32 32 H 1.09002 * 109.47067 * 59.99861 * 11 10 9 33 33 H 1.09000 * 109.47312 * 179.97438 * 11 10 9 34 34 H 1.09004 * 109.46930 * 299.99944 * 11 10 9 35 35 H 1.08998 * 109.47624 * 59.99457 * 12 10 9 36 36 H 1.09000 * 109.47140 * 179.97438 * 12 10 9 37 37 H 1.09002 * 109.47045 * 299.99833 * 12 10 9 38 38 H 0.96999 * 120.00022 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7045 0.0045 6 6 2.2594 -1.1081 -0.0006 7 6 1.7819 -2.5375 -0.0003 8 7 1.5132 -2.9637 1.3795 9 6 1.0440 -4.3552 1.4188 10 6 0.7760 -4.7623 2.8691 11 6 2.0665 -4.6360 3.6812 12 6 -0.2942 -3.8464 3.4664 13 6 0.2941 -6.1896 2.9093 14 1 0.1900 -6.7505 1.9923 15 6 -0.0137 -6.7796 4.1168 16 7 0.1126 -6.0965 5.2336 17 14 -0.6103 -8.5491 4.1668 18 1 0.4285 -9.4382 3.5877 19 1 -0.8718 -8.9438 5.5743 20 1 -1.8626 -8.6717 3.3781 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 1.9173 2.1324 -0.0004 25 1 4.4166 1.3437 -0.0003 26 1 4.4166 -1.3437 0.0090 27 1 2.5498 -3.1772 -0.4352 28 1 0.8679 -2.6153 -0.5892 29 1 0.8515 -2.3467 1.8263 30 1 0.1249 -4.4453 0.8400 31 1 1.8066 -5.0079 0.9936 32 1 2.4145 -3.6035 3.6521 33 1 1.8754 -4.9256 4.7145 34 1 2.8289 -5.2886 3.2557 35 1 -1.2136 -3.9363 2.8879 36 1 -0.4855 -4.1367 4.4995 37 1 0.0539 -2.8139 3.4372 38 1 -0.1043 -6.5114 6.0831 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459685402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:27 Heat of formation + Delta-G solvation = 45.604783 kcal Electronic energy + Delta-G solvation = -16915.353881 eV Core-core repulsion = 14372.566246 eV Total energy + Delta-G solvation = -2542.787635 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.01964 -36.90174 -34.00458 -32.72470 -31.19992 -28.91609 -26.28141 -25.56799 -25.25271 -24.95545 -22.80062 -20.41200 -19.08604 -18.40507 -16.83282 -15.84873 -15.31513 -15.04371 -14.61964 -14.11516 -13.82569 -13.15981 -13.07628 -12.57603 -12.42969 -12.20577 -12.06613 -11.90955 -11.64791 -11.59067 -11.07118 -10.97461 -10.64315 -10.58829 -10.17534 -10.05043 -9.37908 -9.10396 -8.63235 -8.42654 -8.28383 -7.91759 -7.64197 -5.90379 -4.01100 2.39227 3.07889 3.23281 3.32986 3.37954 3.40450 4.44584 4.75757 4.90521 5.08300 5.16813 5.21752 5.34861 5.37052 5.47925 5.76688 5.86299 5.96227 6.31225 6.36419 6.46524 6.56193 6.70964 6.87744 7.07368 7.16180 7.22671 7.39886 7.42363 7.47127 7.53079 7.72873 7.76080 7.84165 7.94506 8.21108 8.35529 8.56200 9.00137 9.63823 11.10105 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.048896 B = 0.005056 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.503045 B = 5537.021835 C = 5611.378776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.449 5.449 3 C -0.024 4.024 4 C -0.203 4.203 5 C -0.184 4.184 6 C 0.028 3.972 7 C 0.126 3.874 8 N -0.679 5.679 9 C 0.074 3.926 10 C 0.069 3.931 11 C -0.119 4.119 12 C -0.132 4.132 13 C -0.507 4.507 14 H 0.051 0.949 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.156 0.844 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.088 0.912 28 H 0.024 0.976 29 H 0.335 0.665 30 H 0.012 0.988 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.084 0.916 37 H 0.009 0.991 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 11.596 -9.374 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.153 4.153 4 C -0.228 4.228 5 C -0.209 4.209 6 C -0.084 4.084 7 C -0.004 4.004 8 N -0.311 5.311 9 C -0.054 4.054 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.190 4.190 13 C -0.546 4.546 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.205 1.205 21 H 0.092 0.908 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.174 0.826 25 H 0.149 0.851 26 H 0.151 0.849 27 H 0.106 0.894 28 H 0.042 0.958 29 H 0.154 0.846 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.102 0.898 37 H 0.028 0.972 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.255 11.385 -9.044 14.594 hybrid contribution -1.309 -0.815 -0.289 1.569 sum -0.054 10.571 -9.332 14.101 Atomic orbital electron populations 1.21989 0.77904 1.03881 1.03385 1.43920 1.05827 1.05958 1.56851 1.21684 0.90662 0.91059 1.11938 1.20838 0.95713 0.95211 1.10996 1.20654 0.95340 0.94756 1.10182 1.20385 0.90486 0.88289 1.09217 1.20388 0.99235 0.89016 0.91734 1.60656 1.51551 1.04902 1.13948 1.22198 0.96227 0.86453 1.00496 1.18085 0.92838 0.94015 0.88192 1.21639 0.96391 0.96954 1.02730 1.21834 0.97577 0.95330 1.04212 1.21065 1.44069 0.96869 0.92614 0.93050 1.24887 0.95489 0.97452 0.95725 1.69829 1.48812 1.36108 0.97593 0.86714 0.79193 0.85517 0.76842 1.20366 1.21361 1.20516 0.90818 0.90143 0.90111 0.82620 0.85078 0.84870 0.89376 0.95806 0.84637 0.96967 0.92306 0.96036 0.90780 0.96223 0.96318 0.89762 0.97222 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.92 59.85 0.65 1.36 16 2 N -0.45 -5.95 3.15 -119.89 -0.38 -6.33 16 3 C -0.02 -0.30 11.43 -16.75 -0.19 -0.49 16 4 C -0.20 -2.74 10.86 -39.78 -0.43 -3.17 16 5 C -0.18 -2.79 10.77 -39.78 -0.43 -3.22 16 6 C 0.03 0.42 6.40 -81.79 -0.52 -0.11 16 7 C 0.13 1.96 5.84 -4.98 -0.03 1.93 16 8 N -0.68 -12.48 5.70 -115.06 -0.66 -13.13 16 9 C 0.07 1.56 4.59 -3.82 -0.02 1.54 16 10 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 11 C -0.12 -2.97 8.09 37.16 0.30 -2.67 16 12 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 13 C -0.51 -13.67 8.01 -34.44 -0.28 -13.94 16 14 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 15 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 16 N -0.88 -24.59 9.35 55.43 0.52 -24.07 16 17 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.08 0.79 7.12 -51.93 -0.37 0.42 16 24 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 25 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 26 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.02 0.35 7.22 -51.93 -0.37 -0.03 16 29 H 0.33 6.17 6.76 -39.29 -0.27 5.90 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.50 7.60 -51.93 -0.39 0.10 16 33 H 0.07 2.01 6.07 -51.93 -0.32 1.69 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 2.22 6.07 -51.93 -0.31 1.90 16 37 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 304.24 15.07 4.58 4.58 Total: -1.00 -28.90 304.24 -7.93 -36.83 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.15 Total: 4.35 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -0.83 Total: -18.32 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.51 Total: -43.53 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.90 -7.93 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459685402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.433 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds