Wall clock time and date at job start Sun Mar 29 2020 21:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46931 * 89.97690 * 6 5 4 8 8 C 1.46906 * 111.00008 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47109 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47112 * 299.99977 * 9 8 7 11 11 C 1.53007 * 109.46970 * 59.99939 * 9 8 7 12 12 C 1.50697 * 109.46890 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00151 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99624 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00376 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99790 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.46760 * 60.00363 * 16 14 12 18 18 H 1.48497 * 109.47035 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47212 * 300.00387 * 16 14 12 20 20 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 21 21 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 22 22 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 23 23 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 24 24 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 25 25 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 26 26 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 27 27 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 28 28 H 1.00898 * 111.00365 * 303.95654 * 7 6 5 29 29 H 1.09001 * 109.46908 * 299.99902 * 8 7 6 30 30 H 1.09000 * 109.47164 * 60.00132 * 8 7 6 31 31 H 1.09000 * 109.46941 * 60.00345 * 10 9 8 32 32 H 1.08995 * 109.46979 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.47005 * 300.00051 * 10 9 8 34 34 H 1.08999 * 109.47178 * 60.00419 * 11 9 8 35 35 H 1.09007 * 109.46557 * 179.97438 * 11 9 8 36 36 H 1.08998 * 109.46966 * 299.99577 * 11 9 8 37 37 H 0.97003 * 120.00569 * 179.97438 * 15 14 12 38 38 H 1.07994 * 125.89572 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 7 5.1558 -1.8854 1.3848 8 6 6.3399 -2.7540 1.4241 9 6 6.7198 -3.0328 2.8798 10 6 7.0321 -1.7125 3.5871 11 6 5.5541 -3.7271 3.5871 12 6 7.9341 -3.9244 2.9200 13 1 8.3895 -4.2584 1.9995 14 6 8.4642 -4.3127 4.1322 15 7 7.9099 -3.9056 5.2531 16 14 9.9698 -5.4174 4.1822 17 1 11.1009 -4.7436 3.4953 18 1 10.3384 -5.6880 5.5949 19 1 9.6665 -6.6989 3.4959 20 6 2.2595 -1.1081 -0.0002 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 1.9171 2.1325 0.0009 25 1 4.4165 1.3438 0.0033 26 1 4.5268 -2.5289 -0.5135 27 1 5.5803 -1.0941 -0.5145 28 1 5.3157 -1.0331 1.9006 29 1 6.1172 -3.6948 0.9206 30 1 7.1702 -2.2596 0.9198 31 1 6.1535 -1.0681 3.5580 32 1 7.3032 -1.9112 4.6240 33 1 7.8625 -1.2179 3.0832 34 1 5.3317 -4.6677 3.0832 35 1 5.8251 -3.9261 4.6240 36 1 4.6757 -3.0825 3.5579 37 1 8.2826 -4.1791 6.1058 38 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459727264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:33 Heat of formation + Delta-G solvation = 29.560317 kcal Electronic energy + Delta-G solvation = -16619.137542 eV Core-core repulsion = 14075.654167 eV Total energy + Delta-G solvation = -2543.483375 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92776 -38.59914 -35.82988 -33.77428 -32.48048 -29.90458 -27.99144 -27.48763 -27.21679 -25.86464 -24.10524 -21.10232 -20.50126 -20.15718 -18.05226 -17.64182 -16.76848 -16.21923 -16.02694 -15.38832 -15.04542 -14.67652 -14.24784 -14.15049 -13.75808 -13.71438 -13.41062 -13.08088 -13.00979 -12.87513 -12.74756 -12.54612 -12.35442 -12.16919 -12.06639 -11.99519 -11.28299 -10.92835 -10.58266 -10.32048 -9.37468 -9.06679 -8.89398 -7.93951 -6.11283 1.44240 1.45462 1.45732 1.53027 2.07645 2.24361 2.49006 3.27579 3.76696 4.06118 4.27790 4.34667 4.45431 4.51163 4.53912 4.65678 4.70780 4.76092 4.86182 4.90840 4.93520 5.05989 5.20220 5.31220 5.34613 5.46408 5.55655 5.61394 5.71765 5.78640 6.12514 6.21843 6.31133 6.35131 6.41412 6.53228 6.63354 6.71011 6.98163 7.56008 9.04133 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.055101 B = 0.004533 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.034797 B = 6175.140324 C = 6245.275930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.456 5.456 3 C -0.016 4.016 4 C -0.223 4.223 5 C -0.182 4.182 6 C 0.134 3.866 7 N -0.681 5.681 8 C 0.088 3.912 9 C 0.058 3.942 10 C -0.119 4.119 11 C -0.103 4.103 12 C -0.528 4.528 13 H 0.045 0.955 14 C 0.022 3.978 15 N -0.904 5.904 16 Si 0.946 3.054 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.007 4.007 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.094 0.906 24 H 0.189 0.811 25 H 0.131 0.869 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.335 0.665 29 H 0.049 0.951 30 H 0.006 0.994 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.015 0.985 34 H 0.011 0.989 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.257 0.743 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 8.688 -10.177 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.131 5.131 3 C -0.146 4.146 4 C -0.247 4.247 5 C -0.189 4.189 6 C 0.005 3.995 7 N -0.313 5.313 8 C -0.041 4.041 9 C 0.058 3.942 10 C -0.177 4.177 11 C -0.161 4.161 12 C -0.567 4.567 13 H 0.063 0.937 14 C -0.177 4.177 15 N -0.543 5.543 16 Si 0.773 3.227 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.201 1.201 20 C -0.139 4.139 21 H 0.096 0.904 22 H 0.121 0.879 23 H 0.112 0.888 24 H 0.206 0.794 25 H 0.149 0.851 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.154 0.846 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.794 8.147 -9.919 19.586 hybrid contribution 1.815 -0.111 -0.002 1.818 sum -12.979 8.036 -9.921 18.206 Atomic orbital electron populations 1.22268 0.75021 1.05771 1.04109 1.44225 1.07558 1.05507 1.55831 1.22164 0.89950 0.92640 1.09814 1.21004 0.97118 0.94466 1.12159 1.19458 0.93891 0.94161 1.11409 1.20138 0.93111 0.96831 0.89446 1.60617 1.36882 1.20725 1.13059 1.21847 0.89017 0.95182 0.98031 1.18155 0.92983 0.92811 0.90265 1.21646 0.97037 0.96726 1.02290 1.21446 0.96520 0.97166 1.00952 1.21417 1.12815 1.30357 0.92079 0.93672 1.25554 0.99349 0.97309 0.95494 1.69965 1.41183 1.45789 0.97387 0.85807 0.80505 0.79611 0.76800 1.20091 1.21031 1.20065 1.21804 0.90062 0.92256 1.09765 0.90410 0.87931 0.88777 0.79429 0.85112 0.91356 0.95864 0.84588 0.93241 0.97583 0.95094 0.92512 0.96534 0.97019 0.93301 0.95000 0.93320 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 11.12 127.77 1.42 2.19 16 2 N -0.46 -9.58 3.15 -547.90 -1.72 -11.30 16 3 C -0.02 -0.34 11.43 83.21 0.95 0.61 16 4 C -0.22 -6.09 10.81 22.14 0.24 -5.85 16 5 C -0.18 -5.48 5.65 -19.99 -0.11 -5.59 16 6 C 0.13 4.43 6.18 85.56 0.53 4.95 16 7 N -0.68 -26.23 5.70 -517.92 -2.95 -29.19 16 8 C 0.09 3.89 4.59 86.30 0.40 4.29 16 9 C 0.06 2.95 0.57 -52.93 -0.03 2.92 16 10 C -0.12 -5.89 7.92 71.98 0.57 -5.32 16 11 C -0.10 -5.24 8.09 71.98 0.58 -4.66 16 12 C -0.53 -29.42 8.01 25.60 0.21 -29.21 16 13 H 0.04 2.50 7.74 -2.91 -0.02 2.48 16 14 C 0.02 1.21 5.15 84.66 0.44 1.65 16 15 N -0.90 -51.64 9.35 21.45 0.20 -51.44 16 16 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.01 -0.19 11.35 83.21 0.94 0.75 16 21 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 23 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 25 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.34 13.12 6.76 -89.70 -0.61 12.51 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.03 1.37 6.57 -2.39 -0.02 1.35 16 32 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.05 2.71 6.07 -2.38 -0.01 2.70 16 36 H 0.03 1.50 7.60 -2.39 -0.02 1.48 16 37 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -63.41 306.51 4.09 -59.31 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.41 Total: 19.71 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 6.13 Total: -33.27 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -4.48 Total: -91.92 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -63.41 4.09 -59.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.874 kcal (2) G-P(sol) polarization free energy of solvation -63.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds