Wall clock time and date at job start Sun Mar 29 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47166 * 85.38116 * 3 2 1 5 5 C 1.36935 * 119.99888 * 269.99811 * 4 3 2 6 6 H 1.08002 * 119.99653 * 139.84685 * 5 4 3 7 7 C 1.38808 * 120.00167 * 319.85548 * 5 4 3 8 8 N 1.31615 * 120.00317 * 156.99511 * 7 5 4 9 9 Si 1.86806 * 119.99822 * 336.98592 * 7 5 4 10 10 H 1.48500 * 109.46935 * 95.11505 * 9 7 5 11 11 H 1.48496 * 109.46968 * 215.11737 * 9 7 5 12 12 H 1.48503 * 109.46972 * 335.11772 * 9 7 5 13 13 C 1.46497 * 120.00221 * 89.99669 * 4 3 2 14 14 C 1.50698 * 109.47186 * 90.76689 * 13 4 3 15 15 S 1.72119 * 127.92701 * 276.29012 * 14 13 4 16 16 N 1.56510 * 95.88646 * 179.73818 * 15 14 13 17 17 N 1.27577 * 109.21968 * 359.97438 * 16 15 14 18 18 C 1.31732 * 118.27732 * 0.02562 * 17 16 15 19 19 C 1.50706 * 123.76822 * 180.02562 * 18 17 16 20 20 H 4.40643 * 5.51431 * 180.02562 * 4 1 2 21 21 H 1.08992 * 109.47423 * 325.37814 * 3 2 1 22 22 H 1.09001 * 109.46900 * 205.37683 * 3 2 1 23 23 H 0.97000 * 120.00112 * 179.97438 * 8 7 5 24 24 H 1.09010 * 109.47106 * 330.77057 * 13 4 3 25 25 H 1.09003 * 109.47586 * 210.77311 * 13 4 3 26 26 H 1.08999 * 109.46970 * 273.53923 * 19 18 17 27 27 H 1.08998 * 109.47035 * 33.54823 * 19 18 17 28 28 H 1.09003 * 109.46869 * 153.54246 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1103 -1.3767 5 6 3.3632 -1.3443 -1.9246 6 1 3.0910 -1.5379 -2.9517 7 6 3.9448 -2.3462 -1.1600 8 7 3.7653 -3.6092 -1.4837 9 14 4.9824 -1.9019 0.3284 10 1 4.1407 -1.9501 1.5509 11 1 6.1008 -2.8700 0.4589 12 1 5.5306 -0.5322 0.1586 13 6 3.3779 1.0987 -2.1673 14 6 4.8063 1.5414 -1.9811 15 16 5.4599 2.4989 -0.7089 16 7 6.9323 2.4872 -1.2393 17 7 6.9845 1.8089 -2.3186 18 6 5.8707 1.2717 -2.7726 19 6 5.7906 0.4481 -4.0321 20 1 -1.0500 0.0002 0.0000 21 1 3.0097 -0.8448 0.5838 22 1 3.0088 0.9293 0.4404 23 1 4.1720 -4.3094 -0.9495 24 1 2.7060 1.8907 -1.8364 25 1 3.1978 0.8862 -3.2212 26 1 5.6454 1.1069 -4.8883 27 1 6.7161 -0.1135 -4.1585 28 1 4.9521 -0.2447 -3.9605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491757158.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:13 Heat of formation + Delta-G solvation = 146.105673 kcal Electronic energy + Delta-G solvation = -14633.395861 eV Core-core repulsion = 12200.627043 eV Total energy + Delta-G solvation = -2432.768818 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31450 -36.75200 -33.29911 -32.42629 -31.43015 -28.81408 -26.78472 -26.16473 -24.96126 -21.84749 -19.61200 -18.41598 -17.89520 -16.62284 -15.54078 -15.51636 -14.75563 -14.35016 -13.59150 -13.37440 -13.05059 -12.72016 -12.52035 -12.50881 -11.90641 -11.64150 -11.32879 -10.90512 -10.75264 -10.64520 -10.09213 -9.70916 -9.56797 -9.40238 -9.14769 -8.98368 -8.69959 -7.30642 -6.28285 -3.73243 0.77204 1.68166 2.25218 2.76655 3.10851 3.28642 3.32330 3.42459 3.52018 4.27136 4.66426 4.88115 5.04441 5.09526 5.29625 5.47399 5.92783 5.95327 5.96109 6.04598 6.16742 6.27260 6.30384 6.58120 6.65851 7.72094 8.08413 8.29232 8.31313 8.61357 9.37273 9.72495 10.85041 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.011846 C = 0.010118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.744568 B = 2363.090845 C = 2766.585103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.163 4.163 3 C 0.227 3.773 4 N -0.578 5.578 5 C -0.275 4.275 6 H 0.088 0.912 7 C 0.051 3.949 8 N -0.878 5.878 9 Si 0.863 3.137 10 H -0.280 1.280 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.217 3.783 14 C -0.232 4.232 15 S 0.359 5.641 16 N -0.313 5.313 17 N -0.243 5.243 18 C 0.018 3.982 19 C -0.066 4.066 20 H 0.207 0.793 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.268 0.732 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 9.700 0.326 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.166 4.166 3 C 0.102 3.898 4 N -0.297 5.297 5 C -0.404 4.404 6 H 0.105 0.895 7 C -0.153 4.153 8 N -0.516 5.516 9 Si 0.691 3.309 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.191 1.191 13 C 0.088 3.912 14 C -0.373 4.373 15 S 0.495 5.505 16 N -0.291 5.291 17 N -0.111 5.111 18 C -0.127 4.127 19 C -0.127 4.127 20 H 0.224 0.776 21 H 0.098 0.902 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.495 10.517 1.520 10.638 hybrid contribution -0.047 -0.958 -0.063 0.961 sum -0.542 9.559 1.458 9.685 Atomic orbital electron populations 1.24678 0.95669 1.03613 1.02335 1.24557 0.95540 0.97991 0.98491 1.18398 0.83040 1.00521 0.87842 1.44286 1.71629 1.02414 1.11414 1.18764 1.36627 0.85120 0.99909 0.89502 1.25523 0.96771 0.95105 0.97921 1.69847 1.42499 0.99000 1.40250 0.87180 0.81305 0.79081 0.83293 1.20707 1.22059 1.19065 1.19646 0.84356 0.88953 0.98235 1.28471 1.06389 1.03291 0.99141 1.81114 1.03043 1.38637 1.27722 1.78782 1.16517 1.22701 1.11067 1.71049 1.26569 1.08120 1.05342 1.22083 0.86934 1.02107 1.01554 1.20280 1.04628 0.97810 0.89952 0.77586 0.90229 0.91640 0.92143 0.91662 0.89657 0.91240 0.90929 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.19 19.25 29.55 0.57 -3.62 15 2 C -0.16 -3.19 13.68 -37.12 -0.51 -3.70 15 3 C 0.23 4.58 4.99 -6.83 -0.03 4.55 15 4 N -0.58 -12.25 1.96 -177.95 -0.35 -12.60 15 5 C -0.28 -6.88 9.47 -15.06 -0.14 -7.02 15 6 H 0.09 2.32 8.06 -52.49 -0.42 1.89 15 7 C 0.05 1.36 5.27 -17.43 -0.09 1.27 15 8 N -0.88 -25.03 13.97 55.49 0.78 -24.25 15 9 Si 0.86 20.95 25.24 -169.99 -4.29 16.66 15 10 H -0.28 -6.56 6.67 56.52 0.38 -6.18 15 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 15 12 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 13 C 0.22 3.78 5.86 -5.20 -0.03 3.75 15 14 C -0.23 -4.17 6.25 -35.34 -0.22 -4.39 15 15 S 0.36 6.08 23.40 -107.50 -2.52 3.57 15 16 N -0.31 -6.12 12.54 60.35 0.76 -5.36 15 17 N -0.24 -4.91 11.68 32.45 0.38 -4.53 15 18 C 0.02 0.34 6.89 -83.66 -0.58 -0.24 15 19 C -0.07 -1.07 10.05 36.01 0.36 -0.71 15 20 H 0.21 2.67 7.80 -54.09 -0.42 2.25 15 21 H 0.08 1.78 3.66 -51.93 -0.19 1.59 15 22 H 0.07 1.14 8.07 -51.93 -0.42 0.72 15 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 24 H 0.07 0.98 8.07 -51.92 -0.42 0.57 15 25 H 0.09 1.42 7.31 -51.93 -0.38 1.04 15 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 28 H 0.10 1.68 6.94 -51.93 -0.36 1.32 15 LS Contribution 265.89 15.07 4.01 4.01 Total: -1.00 -29.69 265.89 -4.53 -34.22 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -2.62 Total: -1.60 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.67 Total: -10.11 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 1.56 Total: -46.75 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.29 Total: 16.66 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -2.52 Total: 3.57 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.69 -4.53 -34.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491757158.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.326 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds