Wall clock time and date at job start Sun Mar 29 2020 22:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47166 * 85.38116 * 3 2 1 5 5 C 1.36935 * 119.99888 * 269.99811 * 4 3 2 6 6 H 1.08002 * 119.99653 * 139.84685 * 5 4 3 7 7 C 1.38808 * 120.00167 * 319.85548 * 5 4 3 8 8 N 1.31615 * 120.00317 * 156.99511 * 7 5 4 9 9 Si 1.86806 * 119.99822 * 336.98592 * 7 5 4 10 10 H 1.48500 * 109.46935 * 95.11505 * 9 7 5 11 11 H 1.48496 * 109.46968 * 215.11737 * 9 7 5 12 12 H 1.48503 * 109.46972 * 335.11772 * 9 7 5 13 13 C 1.46497 * 120.00221 * 89.99669 * 4 3 2 14 14 C 1.50698 * 109.47186 * 90.76689 * 13 4 3 15 15 S 1.72119 * 127.92701 * 276.29012 * 14 13 4 16 16 N 1.56510 * 95.88646 * 179.73818 * 15 14 13 17 17 N 1.27577 * 109.21968 * 359.97438 * 16 15 14 18 18 C 1.31732 * 118.27732 * 0.02562 * 17 16 15 19 19 C 1.50706 * 123.76822 * 180.02562 * 18 17 16 20 20 H 4.40643 * 5.51431 * 180.02562 * 4 1 2 21 21 H 1.08992 * 109.47423 * 325.37814 * 3 2 1 22 22 H 1.09001 * 109.46900 * 205.37683 * 3 2 1 23 23 H 0.97000 * 120.00112 * 179.97438 * 8 7 5 24 24 H 1.09010 * 109.47106 * 330.77057 * 13 4 3 25 25 H 1.09003 * 109.47586 * 210.77311 * 13 4 3 26 26 H 1.08999 * 109.46970 * 273.53923 * 19 18 17 27 27 H 1.08998 * 109.47035 * 33.54823 * 19 18 17 28 28 H 1.09003 * 109.46869 * 153.54246 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1103 -1.3767 5 6 3.3632 -1.3443 -1.9246 6 1 3.0910 -1.5379 -2.9517 7 6 3.9448 -2.3462 -1.1600 8 7 3.7653 -3.6092 -1.4837 9 14 4.9824 -1.9019 0.3284 10 1 4.1407 -1.9501 1.5509 11 1 6.1008 -2.8700 0.4589 12 1 5.5306 -0.5322 0.1586 13 6 3.3779 1.0987 -2.1673 14 6 4.8063 1.5414 -1.9811 15 16 5.4599 2.4989 -0.7089 16 7 6.9323 2.4872 -1.2393 17 7 6.9845 1.8089 -2.3186 18 6 5.8707 1.2717 -2.7726 19 6 5.7906 0.4481 -4.0321 20 1 -1.0500 0.0002 0.0000 21 1 3.0097 -0.8448 0.5838 22 1 3.0088 0.9293 0.4404 23 1 4.1720 -4.3094 -0.9495 24 1 2.7060 1.8907 -1.8364 25 1 3.1978 0.8862 -3.2212 26 1 5.6454 1.1069 -4.8883 27 1 6.7161 -0.1135 -4.1585 28 1 4.9521 -0.2447 -3.9605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491757158.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:12 Heat of formation + Delta-G solvation = 127.250081 kcal Electronic energy + Delta-G solvation = -14634.213501 eV Core-core repulsion = 12200.627043 eV Total energy + Delta-G solvation = -2433.586458 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.78573 -38.36070 -34.76160 -34.18498 -33.00669 -30.27909 -28.31247 -27.71586 -26.54850 -23.51743 -21.08012 -19.99923 -19.33436 -18.25853 -17.30623 -17.01137 -16.30320 -15.85956 -15.12614 -15.07690 -14.64768 -14.40428 -13.98267 -13.78663 -13.48489 -13.15555 -12.84270 -12.67123 -12.57465 -12.12781 -11.89358 -11.20485 -11.03145 -10.95225 -10.76396 -10.49166 -10.31908 -9.06816 -8.29345 -5.71098 -0.67002 0.27880 0.81170 1.18837 1.30221 1.34076 1.36834 1.97993 2.09707 2.30921 3.03598 3.23503 3.42256 3.74146 3.89409 4.05796 4.46224 4.56770 4.62985 4.66513 4.78788 4.88494 4.93928 5.26871 5.33177 5.84343 6.15005 6.79443 6.85519 6.91742 7.46242 7.87317 8.88616 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.011846 C = 0.010118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.744568 B = 2363.090845 C = 2766.585103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.219 4.219 3 C 0.225 3.775 4 N -0.590 5.590 5 C -0.249 4.249 6 H 0.063 0.937 7 C 0.003 3.997 8 N -0.930 5.930 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.314 1.314 12 H -0.261 1.261 13 C 0.220 3.780 14 C -0.245 4.245 15 S 0.429 5.571 16 N -0.338 5.338 17 N -0.270 5.270 18 C 0.012 3.988 19 C -0.064 4.064 20 H 0.246 0.754 21 H 0.055 0.945 22 H 0.093 0.907 23 H 0.264 0.736 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 11.916 0.798 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.222 4.222 3 C 0.100 3.900 4 N -0.310 5.310 5 C -0.379 4.379 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.739 3.261 10 H -0.197 1.197 11 H -0.242 1.242 12 H -0.185 1.185 13 C 0.092 3.908 14 C -0.387 4.387 15 S 0.564 5.436 16 N -0.317 5.317 17 N -0.137 5.137 18 C -0.134 4.134 19 C -0.124 4.124 20 H 0.263 0.737 21 H 0.073 0.927 22 H 0.111 0.889 23 H 0.073 0.927 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.560 12.779 2.003 13.029 hybrid contribution 0.176 -1.438 -0.242 1.469 sum -1.384 11.341 1.761 11.560 Atomic orbital electron populations 1.25604 0.96569 1.00972 0.99611 1.24621 0.96084 1.00467 1.00983 1.18351 0.83980 1.00761 0.86880 1.44283 1.72551 1.02233 1.11961 1.18623 1.34059 0.86663 0.98546 0.91985 1.25935 0.98442 0.95034 1.00190 1.69949 1.45171 0.99888 1.42256 0.86407 0.79635 0.78207 0.81876 1.19672 1.24233 1.18517 1.19731 0.84573 0.88284 0.98246 1.28547 1.06324 1.04013 0.99775 1.80804 1.00860 1.36438 1.25464 1.78576 1.18597 1.23174 1.11310 1.71113 1.27443 1.09175 1.05947 1.22497 0.86884 1.01680 1.02305 1.20318 1.03918 0.97887 0.90293 0.73731 0.92734 0.88948 0.92690 0.88510 0.88943 0.88137 0.91090 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.44 19.25 74.32 1.43 -5.01 15 2 C -0.22 -8.02 13.68 31.13 0.43 -7.59 15 3 C 0.22 8.63 4.99 84.57 0.42 9.05 15 4 N -0.59 -24.06 1.96 -716.90 -1.41 -25.46 15 5 C -0.25 -12.46 9.47 84.03 0.80 -11.67 15 6 H 0.06 3.37 8.06 -2.91 -0.02 3.35 15 7 C 0.00 0.15 5.27 84.86 0.45 0.60 15 8 N -0.93 -54.75 13.97 21.65 0.30 -54.45 15 9 Si 0.91 43.72 25.24 68.60 1.73 45.45 15 10 H -0.27 -12.34 6.67 99.48 0.66 -11.68 15 11 H -0.31 -15.92 7.11 99.48 0.71 -15.21 15 12 H -0.26 -12.03 7.11 99.48 0.71 -11.32 15 13 C 0.22 7.07 5.86 85.63 0.50 7.57 15 14 C -0.25 -8.20 6.25 25.02 0.16 -8.04 15 15 S 0.43 13.23 23.40 -56.49 -1.32 11.91 15 16 N -0.34 -12.55 12.54 37.02 0.46 -12.08 15 17 N -0.27 -10.47 11.68 -51.25 -0.60 -11.06 15 18 C 0.01 0.41 6.89 41.91 0.29 0.70 15 19 C -0.06 -1.98 10.05 71.24 0.72 -1.26 15 20 H 0.25 5.13 7.80 -4.42 -0.03 5.10 15 21 H 0.05 2.37 3.66 -2.39 -0.01 2.37 15 22 H 0.09 2.93 8.07 -2.39 -0.02 2.92 15 23 H 0.26 14.95 8.31 -92.71 -0.77 14.18 15 24 H 0.10 2.53 8.07 -2.38 -0.02 2.51 15 25 H 0.09 2.85 7.31 -2.39 -0.02 2.84 15 26 H 0.10 2.44 8.14 -2.39 -0.02 2.43 15 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 28 H 0.08 2.83 6.94 -2.39 -0.02 2.81 15 Total: -1.00 -64.37 265.89 5.48 -58.88 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 1.13 Total: 2.47 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 5.18 Total: -15.66 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -1.24 Total: -103.06 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.73 Total: 45.45 kcal Atomic # 16 Polarization: 13.23 SS G_CDS: -1.32 Total: 11.91 kcal Total: -64.37 5.48 -58.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491757158.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.133 kcal (2) G-P(sol) polarization free energy of solvation -64.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds