Wall clock time and date at job start Sun Mar 29 2020 21:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47032 * 2 1 4 4 N 1.46901 * 109.47314 * 119.99881 * 2 1 3 5 5 C 1.46905 * 110.99611 * 73.14008 * 4 2 1 6 6 C 1.50699 * 109.47149 * 66.04170 * 5 4 2 7 7 H 1.07991 * 120.00198 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99584 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00144 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47162 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47247 * 119.99672 * 10 8 6 13 13 H 1.48501 * 109.46755 * 239.99695 * 10 8 6 14 14 C 1.46893 * 111.00335 * 309.18537 * 4 2 1 15 15 C 1.50697 * 109.47449 * 199.86962 * 14 4 2 16 16 C 1.40889 * 126.29326 * 84.46897 * 15 14 4 17 17 C 1.34852 * 107.42018 * 180.02562 * 16 15 14 18 18 N 1.36342 * 108.21455 * 359.97438 * 17 16 15 19 19 C 1.46510 * 125.63549 * 180.02562 * 18 17 16 20 20 C 1.34851 * 126.29112 * 264.49925 * 15 14 4 21 21 H 1.09003 * 109.47374 * 299.99501 * 1 2 3 22 22 H 1.09001 * 109.47574 * 59.99690 * 1 2 3 23 23 H 1.09004 * 109.47122 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47374 * 240.00498 * 2 1 3 25 25 H 1.09003 * 109.47161 * 174.46294 * 3 2 1 26 26 H 1.08995 * 109.47509 * 294.46992 * 3 2 1 27 27 H 1.09003 * 109.47266 * 54.46772 * 3 2 1 28 28 H 1.08995 * 109.46977 * 186.04639 * 5 4 2 29 29 H 1.09007 * 109.46692 * 306.04335 * 5 4 2 30 30 H 0.97003 * 120.00310 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.47288 * 79.86365 * 14 4 2 32 32 H 1.09001 * 109.46802 * 319.86779 * 14 4 2 33 33 H 1.08000 * 126.28918 * 359.75753 * 16 15 14 34 34 H 1.07999 * 125.89441 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.46533 * 269.97907 * 19 18 17 36 36 H 1.08994 * 109.46697 * 29.97429 * 19 18 17 37 37 H 1.08996 * 109.47137 * 149.97498 * 19 18 17 38 38 H 1.08003 * 125.89270 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.8201 -2.1436 1.0878 6 6 2.6873 -2.6863 -0.0188 7 1 3.3233 -2.0200 -0.5825 8 6 2.6685 -4.0335 -0.3115 9 7 1.8943 -4.8450 0.3752 10 14 3.7440 -4.7063 -1.6828 11 1 4.5158 -3.5961 -2.2966 12 1 4.6825 -5.7139 -1.1267 13 1 2.8881 -5.3438 -2.7155 14 6 1.3783 -0.1645 2.4109 15 6 2.2129 -0.5164 3.6153 16 6 3.3222 0.2041 4.1006 17 6 3.7806 -0.4457 5.1896 18 7 2.9946 -1.5407 5.3948 19 6 3.1542 -2.5153 6.4770 20 6 2.0357 -1.5791 4.4263 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1254 1.4441 0.0992 26 1 1.7597 1.9270 -0.9353 27 1 1.5980 1.9842 0.8363 28 1 2.0913 -2.6211 2.0293 29 1 0.7735 -2.3502 0.8638 30 1 1.8814 -5.7928 0.1695 31 1 0.3855 -0.6019 2.5165 32 1 1.2914 0.9192 2.3331 33 1 3.7328 1.1081 3.6756 34 1 4.6247 -0.1499 5.7949 35 1 3.8170 -3.3163 6.1496 36 1 3.5832 -2.0225 7.3494 37 1 2.1812 -2.9322 6.7370 38 1 1.2666 -2.3307 4.3262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535795665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:39 Heat of formation + Delta-G solvation = 52.799253 kcal Electronic energy + Delta-G solvation = -17170.523809 eV Core-core repulsion = 14628.048150 eV Total energy + Delta-G solvation = -2542.475659 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60675 -37.46448 -32.85755 -32.67480 -30.68926 -28.70476 -27.38991 -26.47693 -25.76616 -23.68594 -21.93123 -19.79191 -19.41149 -18.27330 -16.49831 -16.07430 -14.97814 -14.86483 -14.40775 -13.96922 -13.65415 -13.36919 -12.78760 -12.67947 -12.38918 -12.19664 -11.97599 -11.89534 -11.64920 -11.37580 -11.08195 -10.95287 -10.77481 -10.57674 -10.42084 -10.29963 -9.88126 -9.59110 -9.00712 -8.33170 -7.91401 -7.50768 -6.93709 -5.92787 -3.91524 2.78930 3.35720 3.41935 3.42920 3.48493 3.59276 4.51916 4.95928 5.28302 5.32387 5.42705 5.43893 5.54876 5.67630 5.71537 5.88124 5.96115 6.08539 6.14735 6.21511 6.28522 6.34828 6.41437 6.52359 6.66435 6.76702 6.94141 7.01212 7.06257 7.53614 7.56569 7.60314 7.78598 7.89066 7.95369 8.29882 8.47170 8.76040 9.17154 9.71441 11.18141 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.008828 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.451066 B = 3170.947828 C = 4233.744774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 C -0.139 4.139 4 N -0.523 5.523 5 C 0.193 3.807 6 C -0.498 4.498 7 H 0.062 0.938 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.892 3.108 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.125 3.875 15 C -0.139 4.139 16 C -0.177 4.177 17 C -0.034 4.034 18 N -0.457 5.457 19 C 0.079 3.921 20 C -0.006 4.006 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.033 0.967 29 H -0.010 1.010 30 H 0.258 0.742 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.129 0.871 34 H 0.152 0.848 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 8.147 8.781 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 C -0.197 4.197 4 N -0.247 5.247 5 C 0.067 3.933 6 C -0.536 4.536 7 H 0.080 0.920 8 C -0.147 4.147 9 N -0.542 5.542 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.213 1.213 14 C -0.004 4.004 15 C -0.146 4.146 16 C -0.203 4.203 17 C -0.163 4.163 18 N -0.134 5.134 19 C -0.064 4.064 20 C -0.136 4.136 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.007 0.993 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.147 0.853 34 H 0.170 0.830 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.389 7.790 9.112 11.994 hybrid contribution -0.245 -0.878 -0.760 1.186 sum 0.144 6.913 8.352 10.843 Atomic orbital electron populations 1.22452 0.99063 1.01941 1.00454 1.21597 0.91489 0.94029 0.95832 1.21848 1.01635 0.96309 0.99861 1.62277 1.56123 1.07082 0.99246 1.19724 0.94788 0.81138 0.97612 1.21261 1.23588 0.92508 1.16281 0.92022 1.24959 0.95921 0.97054 0.96770 1.69969 1.39475 1.03819 1.40894 0.86527 0.80416 0.78944 0.82054 1.19694 1.21220 1.21253 1.20320 0.93229 0.98383 0.88440 1.19377 1.00056 0.97211 0.97923 1.20670 0.99414 1.02291 0.97886 1.21608 1.00344 0.91469 1.02839 1.43808 1.25187 1.21055 1.23347 1.21894 1.03190 0.92251 0.89040 1.21636 0.97237 1.01792 0.92918 0.93475 0.93512 0.92208 0.89180 0.92263 0.93607 0.93641 0.94845 0.99256 0.93286 0.95677 0.91744 0.85339 0.83022 0.91310 0.90585 0.90347 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.49 37.15 0.32 -2.95 16 2 C 0.08 1.59 2.76 -67.71 -0.19 1.40 16 3 C -0.14 -2.29 9.11 37.16 0.34 -1.95 16 4 N -0.52 -11.70 4.34 -229.52 -1.00 -12.69 16 5 C 0.19 5.12 4.45 -4.97 -0.02 5.09 16 6 C -0.50 -14.33 8.32 -34.44 -0.29 -14.61 16 7 H 0.06 1.78 7.22 -52.49 -0.38 1.40 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 10 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.12 2.44 4.02 -4.98 -0.02 2.42 16 15 C -0.14 -2.69 5.19 -104.82 -0.54 -3.23 16 16 C -0.18 -3.13 10.81 -39.78 -0.43 -3.56 16 17 C -0.03 -0.53 11.43 -16.75 -0.19 -0.73 16 18 N -0.46 -7.25 3.15 -124.53 -0.39 -7.64 16 19 C 0.08 0.88 11.12 59.85 0.67 1.54 16 20 C -0.01 -0.11 10.38 -16.75 -0.17 -0.29 16 21 H 0.05 0.78 6.66 -51.93 -0.35 0.44 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 1.22 6.71 -51.93 -0.35 0.87 16 24 H 0.09 2.01 6.61 -51.93 -0.34 1.67 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.69 6.59 -51.93 -0.34 0.35 16 28 H 0.03 0.96 6.66 -51.93 -0.35 0.61 16 29 H -0.01 -0.29 6.57 -51.92 -0.34 -0.63 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.03 0.50 7.34 -51.93 -0.38 0.12 16 32 H 0.06 1.15 6.02 -51.93 -0.31 0.83 16 33 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 34 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.15 2.79 8.06 -52.48 -0.42 2.36 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -31.98 304.89 -7.79 -39.77 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.08 Total: 0.64 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.63 Total: -15.41 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.65 Total: -46.76 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.98 -7.79 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535795665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.571 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds