Wall clock time and date at job start Sun Mar 29 2020 21:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47032 * 2 1 4 4 N 1.46901 * 109.47314 * 119.99881 * 2 1 3 5 5 C 1.46905 * 110.99611 * 73.14008 * 4 2 1 6 6 C 1.50699 * 109.47149 * 66.04170 * 5 4 2 7 7 H 1.07991 * 120.00198 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99584 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00144 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47162 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47247 * 119.99672 * 10 8 6 13 13 H 1.48501 * 109.46755 * 239.99695 * 10 8 6 14 14 C 1.46893 * 111.00335 * 309.18537 * 4 2 1 15 15 C 1.50697 * 109.47449 * 199.86962 * 14 4 2 16 16 C 1.40889 * 126.29326 * 84.46897 * 15 14 4 17 17 C 1.34852 * 107.42018 * 180.02562 * 16 15 14 18 18 N 1.36342 * 108.21455 * 359.97438 * 17 16 15 19 19 C 1.46510 * 125.63549 * 180.02562 * 18 17 16 20 20 C 1.34851 * 126.29112 * 264.49925 * 15 14 4 21 21 H 1.09003 * 109.47374 * 299.99501 * 1 2 3 22 22 H 1.09001 * 109.47574 * 59.99690 * 1 2 3 23 23 H 1.09004 * 109.47122 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47374 * 240.00498 * 2 1 3 25 25 H 1.09003 * 109.47161 * 174.46294 * 3 2 1 26 26 H 1.08995 * 109.47509 * 294.46992 * 3 2 1 27 27 H 1.09003 * 109.47266 * 54.46772 * 3 2 1 28 28 H 1.08995 * 109.46977 * 186.04639 * 5 4 2 29 29 H 1.09007 * 109.46692 * 306.04335 * 5 4 2 30 30 H 0.97003 * 120.00310 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.47288 * 79.86365 * 14 4 2 32 32 H 1.09001 * 109.46802 * 319.86779 * 14 4 2 33 33 H 1.08000 * 126.28918 * 359.75753 * 16 15 14 34 34 H 1.07999 * 125.89441 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.46533 * 269.97907 * 19 18 17 36 36 H 1.08994 * 109.46697 * 29.97429 * 19 18 17 37 37 H 1.08996 * 109.47137 * 149.97498 * 19 18 17 38 38 H 1.08003 * 125.89270 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.8201 -2.1436 1.0878 6 6 2.6873 -2.6863 -0.0188 7 1 3.3233 -2.0200 -0.5825 8 6 2.6685 -4.0335 -0.3115 9 7 1.8943 -4.8450 0.3752 10 14 3.7440 -4.7063 -1.6828 11 1 4.5158 -3.5961 -2.2966 12 1 4.6825 -5.7139 -1.1267 13 1 2.8881 -5.3438 -2.7155 14 6 1.3783 -0.1645 2.4109 15 6 2.2129 -0.5164 3.6153 16 6 3.3222 0.2041 4.1006 17 6 3.7806 -0.4457 5.1896 18 7 2.9946 -1.5407 5.3948 19 6 3.1542 -2.5153 6.4770 20 6 2.0357 -1.5791 4.4263 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1254 1.4441 0.0992 26 1 1.7597 1.9270 -0.9353 27 1 1.5980 1.9842 0.8363 28 1 2.0913 -2.6211 2.0293 29 1 0.7735 -2.3502 0.8638 30 1 1.8814 -5.7928 0.1695 31 1 0.3855 -0.6019 2.5165 32 1 1.2914 0.9192 2.3331 33 1 3.7328 1.1081 3.6756 34 1 4.6247 -0.1499 5.7949 35 1 3.8170 -3.3163 6.1496 36 1 3.5832 -2.0225 7.3494 37 1 2.1812 -2.9322 6.7370 38 1 1.2666 -2.3307 4.3262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535795665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:39 Heat of formation + Delta-G solvation = 33.193287 kcal Electronic energy + Delta-G solvation = -17171.373988 eV Core-core repulsion = 14628.048150 eV Total energy + Delta-G solvation = -2543.325838 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.90181 -39.14674 -34.86192 -34.11655 -32.26345 -30.31229 -28.91910 -27.92805 -27.30460 -25.27508 -23.86477 -21.08237 -20.89020 -19.81551 -18.28743 -17.81436 -16.74051 -16.34283 -15.90757 -15.64843 -15.16968 -14.67400 -14.53220 -14.12870 -13.99593 -13.55197 -13.32653 -13.20839 -13.04388 -12.95861 -12.72675 -12.59784 -12.47779 -12.43625 -12.21154 -11.90373 -11.65375 -11.36672 -11.08467 -10.56699 -9.21433 -8.90905 -8.71820 -8.15676 -6.23631 1.38605 1.39094 1.47575 1.53036 2.17730 2.28935 2.42451 3.16090 3.62782 4.08477 4.19736 4.27334 4.31218 4.37832 4.47146 4.52254 4.63915 4.70486 4.71992 4.77350 4.85755 4.93596 4.98831 5.06385 5.16669 5.32253 5.35815 5.40510 5.52345 5.61202 5.69032 5.75095 6.16418 6.23607 6.41525 6.57770 6.70107 6.84510 6.95497 7.44848 8.94926 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.008828 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.451066 B = 3170.947828 C = 4233.744774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 C -0.127 4.127 4 N -0.530 5.530 5 C 0.215 3.785 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.130 3.870 15 C -0.166 4.166 16 C -0.204 4.204 17 C -0.019 4.019 18 N -0.457 5.457 19 C 0.070 3.930 20 C -0.031 4.031 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.026 0.974 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.005 0.995 29 H -0.039 1.039 30 H 0.261 0.739 31 H 0.014 0.986 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.193 0.807 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 9.328 9.119 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.037 4.037 3 C -0.184 4.184 4 N -0.254 5.254 5 C 0.088 3.912 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.189 1.189 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.002 3.998 15 C -0.173 4.173 16 C -0.229 4.229 17 C -0.148 4.148 18 N -0.133 5.133 19 C -0.070 4.070 20 C -0.162 4.162 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.023 0.977 29 H -0.022 1.022 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.104 0.896 33 H 0.156 0.844 34 H 0.210 0.790 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.596 8.980 9.465 13.144 hybrid contribution -0.633 -1.238 -0.800 1.604 sum 0.963 7.742 8.665 11.659 Atomic orbital electron populations 1.22337 0.97700 1.00387 1.02502 1.21691 0.92708 0.95671 0.93590 1.21737 1.01052 0.93689 1.01947 1.62227 1.57132 1.04763 1.01292 1.19275 0.92507 0.83973 0.95422 1.21532 1.23893 0.92989 1.16942 0.92543 1.25844 0.97224 0.97315 0.99271 1.70095 1.40790 1.04215 1.42435 0.85432 0.78601 0.78283 0.78908 1.18919 1.20565 1.20332 1.20317 0.92616 0.99225 0.87611 1.19561 1.01231 0.98325 0.98170 1.20892 0.99555 1.03293 0.99196 1.22219 1.00239 0.90314 1.02071 1.44122 1.24070 1.21667 1.23414 1.22218 1.04223 0.91809 0.88763 1.21616 0.98372 1.01819 0.94392 0.91947 0.90844 0.95531 0.92183 0.93034 0.91019 0.92082 0.97721 1.02193 0.92987 0.96806 0.89608 0.84373 0.79047 0.91302 0.87104 0.89343 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.15 8.49 71.98 0.61 -5.54 16 2 C 0.07 2.88 2.76 44.91 0.12 3.01 16 3 C -0.13 -3.94 9.11 71.98 0.66 -3.28 16 4 N -0.53 -24.30 4.34 -880.08 -3.82 -28.12 16 5 C 0.21 11.97 4.45 85.56 0.38 12.35 16 6 C -0.52 -30.56 8.32 25.60 0.21 -30.35 16 7 H 0.06 3.33 7.22 -2.92 -0.02 3.31 16 8 C 0.00 0.04 5.46 84.66 0.46 0.51 16 9 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 10 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 C 0.13 5.18 4.02 85.56 0.34 5.52 16 15 C -0.17 -6.50 5.19 -19.99 -0.10 -6.60 16 16 C -0.20 -7.02 10.81 22.14 0.24 -6.78 16 17 C -0.02 -0.55 11.43 83.21 0.95 0.40 16 18 N -0.46 -13.98 3.15 -547.89 -1.72 -15.71 16 19 C 0.07 1.43 11.12 127.77 1.42 2.85 16 20 C -0.03 -1.18 10.38 83.21 0.86 -0.31 16 21 H 0.06 2.03 6.66 -2.39 -0.02 2.02 16 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.03 1.11 6.71 -2.39 -0.02 1.09 16 24 H 0.06 2.74 6.61 -2.39 -0.02 2.73 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.70 6.59 -2.39 -0.02 1.69 16 28 H 0.00 0.29 6.66 -2.39 -0.02 0.27 16 29 H -0.04 -2.38 6.57 -2.38 -0.02 -2.40 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.01 0.57 7.34 -2.39 -0.02 0.55 16 32 H 0.09 2.98 6.02 -2.39 -0.01 2.96 16 33 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.19 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.14 5.57 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -70.95 304.89 3.94 -67.00 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.02 Total: 14.54 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 6.16 Total: -28.22 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -5.26 Total: -101.33 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -70.95 3.94 -67.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535795665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.197 kcal (2) G-P(sol) polarization free energy of solvation -70.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds