Wall clock time and date at job start Sun Mar 29 2020 21:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46761 * 2 1 4 4 N 1.46897 * 109.46938 * 119.99407 * 2 1 3 5 5 C 1.46899 * 111.00109 * 169.61560 * 4 2 1 6 6 C 1.50705 * 109.47214 * 293.95910 * 5 4 2 7 7 H 1.07997 * 119.99867 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00081 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99754 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99799 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47039 * 60.00419 * 10 8 6 12 12 H 1.48500 * 109.46874 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47350 * 300.00286 * 10 8 6 14 14 C 1.46893 * 111.00433 * 293.57231 * 4 2 1 15 15 C 1.50701 * 109.47305 * 160.36892 * 14 4 2 16 16 C 1.34849 * 125.89030 * 94.83582 * 15 14 4 17 17 C 1.40888 * 107.41738 * 179.88416 * 16 15 14 18 18 C 1.34851 * 107.41741 * 0.38216 * 17 16 15 19 19 N 1.36342 * 125.88849 * 275.14004 * 15 14 4 20 20 C 1.46496 * 125.64022 * 359.96226 * 19 15 14 21 21 H 1.09001 * 109.47389 * 306.52848 * 1 2 3 22 22 H 1.09003 * 109.46798 * 66.52967 * 1 2 3 23 23 H 1.09003 * 109.47004 * 186.52853 * 1 2 3 24 24 H 1.08994 * 109.47330 * 239.99659 * 2 1 3 25 25 H 1.09002 * 109.46782 * 185.29581 * 3 2 1 26 26 H 1.08997 * 109.47327 * 305.29078 * 3 2 1 27 27 H 1.08996 * 109.47511 * 65.29661 * 3 2 1 28 28 H 1.09000 * 109.47019 * 53.95573 * 5 4 2 29 29 H 1.09002 * 109.47382 * 173.95568 * 5 4 2 30 30 H 0.97008 * 120.00101 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47114 * 280.36994 * 14 4 2 32 32 H 1.09004 * 109.47023 * 40.37042 * 14 4 2 33 33 H 1.08004 * 126.29426 * 0.02562 * 16 15 14 34 34 H 1.08006 * 126.29400 * 180.12574 * 17 16 15 35 35 H 1.08000 * 125.89241 * 179.80908 * 18 17 16 36 36 H 1.09002 * 109.47059 * 84.76508 * 20 19 15 37 37 H 1.08999 * 109.47292 * 204.76963 * 20 19 15 38 38 H 1.09005 * 109.46801 * 324.77111 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4669 -0.9298 1.1164 6 6 3.7535 -1.9007 -0.0001 7 1 2.9416 -2.3015 -0.5888 8 6 5.0521 -2.2771 -0.2701 9 7 6.0406 -1.7894 0.4471 10 14 5.4071 -3.4810 -1.6535 11 1 4.9232 -2.9152 -2.9384 12 1 6.8702 -3.7210 -1.7376 13 1 4.7101 -4.7643 -1.3841 14 6 1.6781 0.0567 2.4161 15 6 1.7460 -0.8630 3.6080 16 6 2.8067 -1.0203 4.4257 17 6 2.4472 -1.9667 5.4055 18 6 1.1834 -2.3580 5.1442 19 7 0.7477 -1.6838 4.0421 20 6 -0.5747 -1.8189 3.4264 21 1 -0.3634 0.6117 0.8258 22 1 -0.3633 0.4093 -0.9427 23 1 -0.3633 -1.0210 0.1168 24 1 1.8934 -0.5138 -0.8899 25 1 3.1258 1.4440 -0.0949 26 1 1.6013 1.9830 -0.8388 27 1 1.7562 1.9283 0.9336 28 1 3.9789 0.0120 0.9192 29 1 3.8217 -1.3457 2.0595 30 1 6.9543 -2.0545 0.2575 31 1 2.3846 0.8760 2.5486 32 1 0.6689 0.4583 2.3241 33 1 3.7565 -0.5124 4.3457 34 1 3.0707 -2.3177 6.2145 35 1 0.6143 -3.0801 5.7108 36 1 -0.5233 -2.5387 2.6094 37 1 -1.2891 -2.1666 4.1726 38 1 -0.8956 -0.8519 3.0390 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536645390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:34 Heat of formation + Delta-G solvation = 52.194519 kcal Electronic energy + Delta-G solvation = -17457.234722 eV Core-core repulsion = 14914.732840 eV Total energy + Delta-G solvation = -2542.501882 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65616 -37.55703 -32.75062 -32.33952 -31.41874 -29.17501 -26.71389 -26.47834 -25.90707 -24.05545 -22.03813 -19.97674 -19.34224 -18.26575 -16.50569 -16.11382 -15.12509 -14.92783 -14.34909 -14.07465 -13.57373 -13.29297 -12.86139 -12.79549 -12.51496 -12.15215 -11.96544 -11.86149 -11.55792 -11.44787 -11.37764 -11.10059 -10.79805 -10.67591 -10.62713 -10.34995 -10.00296 -9.68552 -9.09684 -8.35602 -8.00534 -7.45496 -7.13061 -5.94389 -3.94533 2.78737 3.36711 3.41048 3.43683 3.48249 3.62407 4.48883 5.05426 5.06949 5.38496 5.39773 5.41315 5.52906 5.62238 5.69838 5.73926 5.80424 6.01150 6.01889 6.08085 6.14591 6.24502 6.30077 6.31699 6.51009 6.77708 6.86175 6.88870 6.94034 7.44951 7.48538 7.62017 7.81304 7.87302 7.93445 8.22097 8.31855 8.63356 9.11850 9.68181 11.16374 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.008789 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.616699 B = 3185.109066 C = 3891.753795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 C -0.181 4.181 4 N -0.525 5.525 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.059 0.941 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.117 3.883 15 C 0.048 3.952 16 C -0.193 4.193 17 C -0.200 4.200 18 C -0.032 4.032 19 N -0.441 5.441 20 C 0.081 3.919 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.046 0.954 28 H -0.007 1.007 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.153 0.847 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.009 3.141 4.923 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 C -0.240 4.240 4 N -0.250 5.250 5 C 0.065 3.935 6 C -0.543 4.543 7 H 0.077 0.923 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.012 4.012 15 C -0.065 4.065 16 C -0.218 4.218 17 C -0.225 4.225 18 C -0.161 4.161 19 N -0.117 5.117 20 C -0.061 4.061 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.011 0.989 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.170 0.830 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.389 2.636 4.797 13.544 hybrid contribution 0.807 -0.024 -0.763 1.111 sum -11.583 2.612 4.034 12.540 Atomic orbital electron populations 1.21898 0.96454 1.01397 1.00136 1.21611 0.93420 0.92102 0.95774 1.22451 1.02580 0.98475 1.00522 1.62356 1.19764 1.44100 0.98751 1.19798 0.80007 0.95411 0.98254 1.21097 0.91978 1.25644 1.15539 0.92283 1.24948 0.96296 0.96588 0.96666 1.69949 0.99365 1.44373 1.39936 0.86635 0.76955 0.81751 0.82474 1.20420 1.21410 1.20327 1.20484 0.99942 0.92543 0.88197 1.20256 0.89038 0.98700 0.98463 1.20661 0.98339 1.04346 0.98438 1.20759 0.95799 1.03298 1.02645 1.21575 0.97430 1.03481 0.93612 1.43746 1.12007 1.32875 1.23079 1.21853 0.82214 1.03257 0.98761 0.93838 0.93204 0.92385 0.88867 0.91824 0.93362 0.93511 0.98904 0.94211 0.93012 0.93462 0.91745 0.85204 0.85431 0.82986 0.90810 0.90880 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.02 37.16 0.34 -1.75 16 2 C 0.08 1.49 2.78 -67.71 -0.19 1.30 16 3 C -0.18 -3.12 8.57 37.16 0.32 -2.80 16 4 N -0.53 -11.11 4.36 -229.52 -1.00 -12.11 16 5 C 0.19 4.96 4.43 -4.97 -0.02 4.93 16 6 C -0.50 -14.25 8.36 -34.44 -0.29 -14.54 16 7 H 0.06 1.66 7.18 -52.49 -0.38 1.28 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.12 2.16 3.73 -4.98 -0.02 2.14 16 15 C 0.05 0.91 5.96 -81.79 -0.49 0.42 16 16 C -0.19 -3.83 9.73 -39.78 -0.39 -4.22 16 17 C -0.20 -3.53 10.86 -39.78 -0.43 -3.96 16 18 C -0.03 -0.51 11.42 -16.75 -0.19 -0.70 16 19 N -0.44 -7.33 3.15 -119.90 -0.38 -7.70 16 20 C 0.08 1.02 10.87 59.84 0.65 1.67 16 21 H 0.04 0.58 6.53 -51.93 -0.34 0.24 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.09 1.97 6.64 -51.93 -0.34 1.63 16 25 H 0.06 1.25 6.81 -51.93 -0.35 0.90 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.74 6.46 -51.93 -0.34 0.41 16 28 H -0.01 -0.19 6.52 -51.93 -0.34 -0.53 16 29 H 0.04 1.14 6.60 -51.93 -0.34 0.80 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.05 0.90 7.20 -51.93 -0.37 0.53 16 32 H 0.06 1.03 5.17 -51.93 -0.27 0.76 16 33 H 0.13 2.62 8.06 -52.48 -0.42 2.20 16 34 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 35 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 38 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 LS Contribution 302.45 15.07 4.56 4.56 Total: -1.00 -31.33 302.45 -7.88 -39.21 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.97 Total: 1.29 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.81 Total: -15.98 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.64 Total: -46.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.33 -7.88 -39.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536645390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.408 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds