Wall clock time and date at job start Sun Mar 29 2020 21:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46761 * 2 1 4 4 N 1.46897 * 109.46938 * 119.99407 * 2 1 3 5 5 C 1.46899 * 111.00109 * 169.61560 * 4 2 1 6 6 C 1.50705 * 109.47214 * 293.95910 * 5 4 2 7 7 H 1.07997 * 119.99867 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00081 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99754 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99799 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47039 * 60.00419 * 10 8 6 12 12 H 1.48500 * 109.46874 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47350 * 300.00286 * 10 8 6 14 14 C 1.46893 * 111.00433 * 293.57231 * 4 2 1 15 15 C 1.50701 * 109.47305 * 160.36892 * 14 4 2 16 16 C 1.34849 * 125.89030 * 94.83582 * 15 14 4 17 17 C 1.40888 * 107.41738 * 179.88416 * 16 15 14 18 18 C 1.34851 * 107.41741 * 0.38216 * 17 16 15 19 19 N 1.36342 * 125.88849 * 275.14004 * 15 14 4 20 20 C 1.46496 * 125.64022 * 359.96226 * 19 15 14 21 21 H 1.09001 * 109.47389 * 306.52848 * 1 2 3 22 22 H 1.09003 * 109.46798 * 66.52967 * 1 2 3 23 23 H 1.09003 * 109.47004 * 186.52853 * 1 2 3 24 24 H 1.08994 * 109.47330 * 239.99659 * 2 1 3 25 25 H 1.09002 * 109.46782 * 185.29581 * 3 2 1 26 26 H 1.08997 * 109.47327 * 305.29078 * 3 2 1 27 27 H 1.08996 * 109.47511 * 65.29661 * 3 2 1 28 28 H 1.09000 * 109.47019 * 53.95573 * 5 4 2 29 29 H 1.09002 * 109.47382 * 173.95568 * 5 4 2 30 30 H 0.97008 * 120.00101 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47114 * 280.36994 * 14 4 2 32 32 H 1.09004 * 109.47023 * 40.37042 * 14 4 2 33 33 H 1.08004 * 126.29426 * 0.02562 * 16 15 14 34 34 H 1.08006 * 126.29400 * 180.12574 * 17 16 15 35 35 H 1.08000 * 125.89241 * 179.80908 * 18 17 16 36 36 H 1.09002 * 109.47059 * 84.76508 * 20 19 15 37 37 H 1.08999 * 109.47292 * 204.76963 * 20 19 15 38 38 H 1.09005 * 109.46801 * 324.77111 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4669 -0.9298 1.1164 6 6 3.7535 -1.9007 -0.0001 7 1 2.9416 -2.3015 -0.5888 8 6 5.0521 -2.2771 -0.2701 9 7 6.0406 -1.7894 0.4471 10 14 5.4071 -3.4810 -1.6535 11 1 4.9232 -2.9152 -2.9384 12 1 6.8702 -3.7210 -1.7376 13 1 4.7101 -4.7643 -1.3841 14 6 1.6781 0.0567 2.4161 15 6 1.7460 -0.8630 3.6080 16 6 2.8067 -1.0203 4.4257 17 6 2.4472 -1.9667 5.4055 18 6 1.1834 -2.3580 5.1442 19 7 0.7477 -1.6838 4.0421 20 6 -0.5747 -1.8189 3.4264 21 1 -0.3634 0.6117 0.8258 22 1 -0.3633 0.4093 -0.9427 23 1 -0.3633 -1.0210 0.1168 24 1 1.8934 -0.5138 -0.8899 25 1 3.1258 1.4440 -0.0949 26 1 1.6013 1.9830 -0.8388 27 1 1.7562 1.9283 0.9336 28 1 3.9789 0.0120 0.9192 29 1 3.8217 -1.3457 2.0595 30 1 6.9543 -2.0545 0.2575 31 1 2.3846 0.8760 2.5486 32 1 0.6689 0.4583 2.3241 33 1 3.7565 -0.5124 4.3457 34 1 3.0707 -2.3177 6.2145 35 1 0.6143 -3.0801 5.7108 36 1 -0.5233 -2.5387 2.6094 37 1 -1.2891 -2.1666 4.1726 38 1 -0.8956 -0.8519 3.0390 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536645390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:34 Heat of formation + Delta-G solvation = 32.670997 kcal Electronic energy + Delta-G solvation = -17458.081326 eV Core-core repulsion = 14914.732840 eV Total energy + Delta-G solvation = -2543.348486 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.99713 -39.16565 -34.87308 -33.59431 -32.90510 -30.90029 -28.36195 -27.97391 -27.04105 -25.74265 -23.93180 -21.34023 -20.84044 -19.69412 -18.30537 -17.86532 -16.74422 -16.50624 -15.92517 -15.58805 -15.13543 -14.64930 -14.50974 -14.09171 -14.03232 -13.79681 -13.31490 -13.15053 -13.02147 -12.85506 -12.76137 -12.67378 -12.64678 -12.48924 -12.24765 -12.00849 -11.67696 -11.41845 -11.16171 -10.56860 -9.35036 -8.97906 -8.75786 -8.16024 -6.24928 1.38081 1.41936 1.42738 1.49572 2.17513 2.28879 2.41323 3.16163 3.47014 4.05019 4.10494 4.13741 4.26499 4.37078 4.43585 4.49946 4.59792 4.65286 4.78703 4.80088 4.81338 4.88011 4.89285 5.02394 5.11591 5.27512 5.32104 5.46415 5.49902 5.53609 5.56398 5.70014 6.11957 6.20972 6.37595 6.51132 6.66922 6.74407 6.91977 7.43277 8.94582 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.008789 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.616699 B = 3185.109066 C = 3891.753795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.073 3.927 3 C -0.173 4.173 4 N -0.527 5.527 5 C 0.211 3.789 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.266 1.266 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.124 3.876 15 C 0.027 3.973 16 C -0.228 4.228 17 C -0.227 4.227 18 C -0.015 4.015 19 N -0.441 5.441 20 C 0.074 3.926 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.060 0.940 28 H -0.036 1.036 29 H 0.004 0.996 30 H 0.262 0.738 31 H 0.033 0.967 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.196 0.804 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 2.442 4.457 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.035 4.035 3 C -0.232 4.232 4 N -0.251 5.251 5 C 0.085 3.915 6 C -0.555 4.555 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.196 1.196 14 C -0.004 4.004 15 C -0.086 4.086 16 C -0.254 4.254 17 C -0.251 4.251 18 C -0.145 4.145 19 N -0.116 5.116 20 C -0.067 4.067 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.079 0.921 28 H -0.019 1.019 29 H 0.022 0.978 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.159 0.841 35 H 0.213 0.787 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.373 1.947 4.319 16.086 hybrid contribution 1.692 0.216 -0.572 1.799 sum -13.681 2.162 3.747 14.349 Atomic orbital electron populations 1.21790 0.92487 1.02059 1.02304 1.21714 0.96428 0.92059 0.93346 1.22357 1.00190 0.98191 1.02477 1.62254 1.16136 1.45860 1.00889 1.19323 0.83123 0.93352 0.95735 1.21419 0.92223 1.25891 1.15992 0.92275 1.25877 0.96106 0.98475 0.99299 1.70099 0.99755 1.45860 1.41750 0.85521 0.76878 0.79262 0.79461 1.19063 1.20974 1.19646 1.20460 1.01141 0.91888 0.86922 1.20258 0.89867 0.99876 0.98618 1.20764 0.98169 1.05924 1.00523 1.21032 0.97365 1.03641 1.03110 1.22214 0.96845 1.02578 0.92857 1.44039 1.12861 1.31748 1.22959 1.22173 0.80722 1.04092 0.99692 0.91849 0.90854 0.92454 0.91914 0.95580 0.90509 0.92133 1.01857 0.97798 0.92959 0.94928 0.88417 0.87723 0.84143 0.78715 0.91442 0.87123 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.02 71.98 0.65 -2.73 16 2 C 0.07 2.68 2.78 44.92 0.12 2.80 16 3 C -0.17 -5.89 8.57 71.98 0.62 -5.27 16 4 N -0.53 -22.58 4.36 -880.07 -3.84 -26.42 16 5 C 0.21 11.59 4.43 85.56 0.38 11.97 16 6 C -0.52 -30.12 8.36 25.60 0.21 -29.91 16 7 H 0.06 3.37 7.18 -2.91 -0.02 3.35 16 8 C 0.00 0.01 5.46 84.66 0.46 0.47 16 9 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 10 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.12 4.58 3.73 85.56 0.32 4.90 16 15 C 0.03 1.03 5.96 41.08 0.24 1.28 16 16 C -0.23 -9.53 9.73 22.14 0.22 -9.32 16 17 C -0.23 -8.04 10.86 22.14 0.24 -7.80 16 18 C -0.01 -0.43 11.42 83.21 0.95 0.52 16 19 N -0.44 -13.75 3.15 -533.25 -1.68 -15.43 16 20 C 0.07 1.57 10.87 127.77 1.39 2.96 16 21 H 0.06 1.42 6.53 -2.39 -0.02 1.40 16 22 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 2.68 6.64 -2.39 -0.02 2.66 16 25 H 0.02 1.05 6.81 -2.39 -0.02 1.04 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 1.86 6.46 -2.39 -0.02 1.85 16 28 H -0.04 -2.15 6.52 -2.39 -0.02 -2.17 16 29 H 0.00 0.24 6.60 -2.39 -0.02 0.22 16 30 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 31 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 32 H 0.10 2.90 5.17 -2.39 -0.01 2.88 16 33 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.20 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 1.54 8.12 -2.39 -0.02 1.52 16 38 H 0.09 1.65 7.30 -2.38 -0.02 1.63 16 Total: -1.00 -71.42 302.45 3.62 -67.80 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.02 Total: 14.53 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 5.81 Total: -30.14 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -5.23 Total: -99.95 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.42 3.62 -67.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536645390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.467 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds