Wall clock time and date at job start Sun Mar 29 2020 21:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00230 * 2 1 4 4 N 1.46896 * 109.47050 * 125.07053 * 3 2 1 5 5 C 1.46898 * 110.99558 * 199.56823 * 4 3 2 6 6 C 1.50693 * 109.47373 * 66.04678 * 5 4 3 7 7 H 1.07996 * 120.00145 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00145 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00211 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99986 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47280 * 90.00435 * 10 8 6 12 12 H 1.48506 * 109.47086 * 210.00351 * 10 8 6 13 13 H 1.48502 * 109.47421 * 329.99968 * 10 8 6 14 14 C 1.46904 * 110.99814 * 75.61469 * 4 3 2 15 15 C 1.50705 * 109.46496 * 199.41288 * 14 4 3 16 16 N 1.30520 * 126.34579 * 264.82435 * 15 14 4 17 17 N 1.28596 * 109.67288 * 180.02562 * 16 15 14 18 18 C 1.30529 * 109.67196 * 359.72528 * 17 16 15 19 19 N 1.35489 * 126.34677 * 84.87118 * 15 14 4 20 20 C 1.46509 * 126.97794 * 359.96534 * 19 15 14 21 21 H 1.08003 * 120.00481 * 180.02562 * 1 2 3 22 22 H 1.08001 * 120.00127 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99605 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.46802 * 5.06654 * 3 2 1 25 25 H 1.08998 * 109.46517 * 245.07386 * 3 2 1 26 26 H 1.09006 * 109.47175 * 186.04745 * 5 4 3 27 27 H 1.09001 * 109.47424 * 306.04325 * 5 4 3 28 28 H 0.96991 * 120.00232 * 179.97438 * 9 8 6 29 29 H 1.08994 * 109.46809 * 79.41666 * 14 4 3 30 30 H 1.08990 * 109.47065 * 319.41098 * 14 4 3 31 31 H 1.07998 * 126.34683 * 180.29668 * 18 17 16 32 32 H 1.09000 * 109.46871 * 89.99990 * 20 19 15 33 33 H 1.08997 * 109.46694 * 329.99530 * 20 19 15 34 34 H 1.09002 * 109.46306 * 209.99646 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9975 1.3312 1.1335 5 6 3.4015 2.7074 1.4510 6 6 2.2077 3.4784 1.9523 7 1 1.2450 2.9946 2.0271 8 6 2.3444 4.8015 2.3155 9 7 3.5165 5.3908 2.2239 10 14 0.8647 5.7570 2.9375 11 1 0.7715 5.6196 4.4132 12 1 1.0165 7.1910 2.5825 13 1 -0.3702 5.2201 2.3113 14 6 4.1697 0.4860 0.8693 15 6 4.8497 0.1493 2.1714 16 7 5.8605 0.7817 2.7024 17 7 6.1844 0.2234 3.8147 18 6 5.3913 -0.7870 4.0466 19 7 4.5257 -0.8666 3.0073 20 6 3.4529 -1.8480 2.8272 21 1 -0.5401 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8499 -0.9354 0.0004 24 1 1.3587 2.1315 0.0908 25 1 2.6202 1.4031 -0.9320 26 1 4.1729 2.6911 2.2210 27 1 3.7934 3.1872 0.5542 28 1 3.6126 6.3216 2.4791 29 1 4.8657 1.0217 0.2239 30 1 3.8515 -0.4329 0.3773 31 1 5.4212 -1.4400 4.9063 32 1 3.8370 -2.7103 2.2823 33 1 2.6375 -1.3954 2.2630 34 1 3.0861 -2.1683 3.8024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562378958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:17 Heat of formation + Delta-G solvation = 110.721025 kcal Electronic energy + Delta-G solvation = -16850.048278 eV Core-core repulsion = 14206.543952 eV Total energy + Delta-G solvation = -2643.504326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.64207 -37.24886 -34.65608 -33.32583 -32.49590 -30.53061 -27.64893 -27.30483 -26.19299 -23.94241 -21.95925 -21.21256 -20.09403 -19.27879 -16.81724 -16.45620 -16.00132 -15.33611 -14.94441 -14.63685 -14.14342 -13.88097 -13.59593 -13.19022 -12.83657 -12.39533 -12.07451 -11.92105 -11.56780 -11.20776 -10.98768 -10.81644 -10.66407 -10.33022 -9.95431 -9.84849 -9.81793 -9.24807 -9.03759 -8.77153 -8.40906 -7.43451 -5.97931 -4.00532 2.17831 2.59659 2.85316 3.33268 3.36084 3.39485 3.41591 4.43837 4.65289 4.80511 4.86901 5.04473 5.10567 5.29456 5.32030 5.38322 5.45130 5.55386 5.73382 5.97043 6.03112 6.13446 6.28943 6.45661 6.56166 6.87971 7.12734 7.18695 7.28216 7.33763 7.77102 8.07855 8.13741 8.48520 9.05875 9.21234 9.62726 11.12497 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.008979 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.787419 B = 3117.629137 C = 4052.819528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.137 4.137 3 C 0.082 3.918 4 N -0.530 5.530 5 C 0.190 3.810 6 C -0.512 4.512 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.890 5.890 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.133 3.867 15 C 0.208 3.792 16 N -0.287 5.287 17 N -0.300 5.300 18 C 0.133 3.867 19 N -0.470 5.470 20 C 0.075 3.925 21 H 0.089 0.911 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.034 0.966 26 H 0.045 0.955 27 H -0.006 1.006 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.212 0.788 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -15.791 -2.350 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.156 4.156 3 C -0.045 4.045 4 N -0.255 5.255 5 C 0.065 3.935 6 C -0.551 4.551 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.529 5.529 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.002 3.998 15 C -0.060 4.060 16 N -0.127 5.127 17 N -0.139 5.139 18 C -0.155 4.155 19 N -0.161 5.161 20 C -0.068 4.068 21 H 0.108 0.892 22 H 0.116 0.884 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.012 0.988 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.228 0.772 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.077 -14.789 -1.724 15.033 hybrid contribution -1.437 -0.153 -0.205 1.459 sum -3.513 -14.942 -1.929 15.471 Atomic orbital electron populations 1.23738 0.95953 1.01384 1.02304 1.22975 0.95912 0.98279 0.98390 1.21223 0.95960 0.95760 0.91584 1.62153 1.11773 1.14929 1.36677 1.19875 0.97157 0.80345 0.96101 1.21082 0.95354 0.95029 1.43613 0.92040 1.24981 0.95884 0.97713 0.95882 1.69971 1.22715 1.12238 1.47993 0.86547 0.82849 0.79083 0.79186 1.20737 1.21266 1.19927 1.20364 0.93162 0.98502 0.87775 1.24804 0.96426 0.87932 0.96875 1.74317 1.12741 1.21814 1.03818 1.74212 1.22959 1.06487 1.10261 1.26255 0.92253 1.01879 0.95100 1.46057 1.26928 1.25195 1.17964 1.22057 0.89559 0.90969 1.04208 0.89219 0.88438 0.88600 0.88434 0.94770 0.93655 0.98777 0.92870 0.91642 0.90408 0.77160 0.90739 0.88364 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.55 14.32 29.02 0.42 -2.14 16 2 C -0.14 -1.91 9.33 -36.02 -0.34 -2.25 16 3 C 0.08 1.46 5.24 -4.98 -0.03 1.43 16 4 N -0.53 -10.84 4.34 -238.97 -1.04 -11.87 16 5 C 0.19 4.99 4.55 -4.98 -0.02 4.96 16 6 C -0.51 -14.41 8.23 -34.44 -0.28 -14.69 16 7 H 0.06 1.70 7.31 -52.49 -0.38 1.31 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 10 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.13 2.33 4.94 -4.97 -0.02 2.30 16 15 C 0.21 3.93 6.89 -154.99 -1.07 2.86 16 16 N -0.29 -6.40 11.77 32.80 0.39 -6.01 16 17 N -0.30 -6.11 12.21 29.69 0.36 -5.75 16 18 C 0.13 2.04 12.74 -89.94 -1.15 0.89 16 19 N -0.47 -7.08 3.15 -122.68 -0.39 -7.47 16 20 C 0.08 0.74 10.98 59.85 0.66 1.39 16 21 H 0.09 0.96 8.06 -52.48 -0.42 0.53 16 22 H 0.10 1.35 7.84 -52.49 -0.41 0.94 16 23 H 0.10 1.13 7.27 -52.48 -0.38 0.74 16 24 H 0.10 1.97 6.23 -51.93 -0.32 1.64 16 25 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 26 H 0.05 1.35 7.06 -51.93 -0.37 0.98 16 27 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 30 H 0.08 1.06 6.72 -51.93 -0.35 0.71 16 31 H 0.21 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.05 7.89 -51.93 -0.41 0.64 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 293.44 15.07 4.42 4.42 Total: -1.00 -34.77 293.44 -7.17 -41.94 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.70 Total: -2.02 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.93 Total: -3.68 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.06 Total: -57.59 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.77 -7.17 -41.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562378958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.664 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds