Wall clock time and date at job start Sun Mar 29 2020 21:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00230 * 2 1 4 4 N 1.46896 * 109.47050 * 125.07053 * 3 2 1 5 5 C 1.46898 * 110.99558 * 199.56823 * 4 3 2 6 6 C 1.50693 * 109.47373 * 66.04678 * 5 4 3 7 7 H 1.07996 * 120.00145 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00145 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00211 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99986 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47280 * 90.00435 * 10 8 6 12 12 H 1.48506 * 109.47086 * 210.00351 * 10 8 6 13 13 H 1.48502 * 109.47421 * 329.99968 * 10 8 6 14 14 C 1.46904 * 110.99814 * 75.61469 * 4 3 2 15 15 C 1.50705 * 109.46496 * 199.41288 * 14 4 3 16 16 N 1.30520 * 126.34579 * 264.82435 * 15 14 4 17 17 N 1.28596 * 109.67288 * 180.02562 * 16 15 14 18 18 C 1.30529 * 109.67196 * 359.72528 * 17 16 15 19 19 N 1.35489 * 126.34677 * 84.87118 * 15 14 4 20 20 C 1.46509 * 126.97794 * 359.96534 * 19 15 14 21 21 H 1.08003 * 120.00481 * 180.02562 * 1 2 3 22 22 H 1.08001 * 120.00127 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99605 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.46802 * 5.06654 * 3 2 1 25 25 H 1.08998 * 109.46517 * 245.07386 * 3 2 1 26 26 H 1.09006 * 109.47175 * 186.04745 * 5 4 3 27 27 H 1.09001 * 109.47424 * 306.04325 * 5 4 3 28 28 H 0.96991 * 120.00232 * 179.97438 * 9 8 6 29 29 H 1.08994 * 109.46809 * 79.41666 * 14 4 3 30 30 H 1.08990 * 109.47065 * 319.41098 * 14 4 3 31 31 H 1.07998 * 126.34683 * 180.29668 * 18 17 16 32 32 H 1.09000 * 109.46871 * 89.99990 * 20 19 15 33 33 H 1.08997 * 109.46694 * 329.99530 * 20 19 15 34 34 H 1.09002 * 109.46306 * 209.99646 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9975 1.3312 1.1335 5 6 3.4015 2.7074 1.4510 6 6 2.2077 3.4784 1.9523 7 1 1.2450 2.9946 2.0271 8 6 2.3444 4.8015 2.3155 9 7 3.5165 5.3908 2.2239 10 14 0.8647 5.7570 2.9375 11 1 0.7715 5.6196 4.4132 12 1 1.0165 7.1910 2.5825 13 1 -0.3702 5.2201 2.3113 14 6 4.1697 0.4860 0.8693 15 6 4.8497 0.1493 2.1714 16 7 5.8605 0.7817 2.7024 17 7 6.1844 0.2234 3.8147 18 6 5.3913 -0.7870 4.0466 19 7 4.5257 -0.8666 3.0073 20 6 3.4529 -1.8480 2.8272 21 1 -0.5401 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8499 -0.9354 0.0004 24 1 1.3587 2.1315 0.0908 25 1 2.6202 1.4031 -0.9320 26 1 4.1729 2.6911 2.2210 27 1 3.7934 3.1872 0.5542 28 1 3.6126 6.3216 2.4791 29 1 4.8657 1.0217 0.2239 30 1 3.8515 -0.4329 0.3773 31 1 5.4212 -1.4400 4.9063 32 1 3.8370 -2.7103 2.2823 33 1 2.6375 -1.3954 2.2630 34 1 3.0861 -2.1683 3.8024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562378958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:17 Heat of formation + Delta-G solvation = 86.966704 kcal Electronic energy + Delta-G solvation = -16851.078342 eV Core-core repulsion = 14206.543952 eV Total energy + Delta-G solvation = -2644.534391 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.95615 -38.82783 -35.84490 -34.96779 -34.21315 -32.01189 -29.46364 -28.40208 -27.54656 -25.78750 -23.22207 -22.91814 -21.48003 -20.47737 -18.56746 -17.97431 -17.31616 -16.84710 -16.42875 -16.11143 -15.73441 -15.37630 -14.89206 -14.16324 -14.11287 -14.05281 -13.58077 -13.33083 -13.24597 -12.78833 -12.61892 -12.53982 -12.40395 -12.00000 -11.68429 -11.31354 -11.18889 -10.95186 -10.62640 -10.25817 -10.16308 -9.13940 -8.19913 -6.31032 0.92307 1.37339 1.39745 1.50131 1.52113 1.76974 1.98076 2.38354 3.12429 3.27290 3.60548 3.80896 3.97050 4.09923 4.12285 4.35426 4.42513 4.49595 4.64377 4.71325 4.79351 4.94483 5.01005 5.09579 5.22378 5.28256 5.33494 5.61554 5.78728 6.02790 6.05525 6.10596 6.27455 6.49885 6.85425 7.38002 7.85894 8.91315 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.008979 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.787419 B = 3117.629137 C = 4052.819528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.082 3.918 4 N -0.527 5.527 5 C 0.209 3.791 6 C -0.520 4.520 7 H 0.066 0.934 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.969 3.031 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.257 1.257 14 C 0.137 3.863 15 C 0.193 3.807 16 N -0.348 5.348 17 N -0.357 5.357 18 C 0.157 3.843 19 N -0.464 5.464 20 C 0.066 3.934 21 H 0.124 0.876 22 H 0.082 0.918 23 H 0.129 0.871 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.004 0.996 27 H -0.040 1.040 28 H 0.263 0.737 29 H 0.047 0.953 30 H 0.126 0.874 31 H 0.265 0.735 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 -18.699 -1.976 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.163 4.163 3 C -0.045 4.045 4 N -0.252 5.252 5 C 0.083 3.917 6 C -0.559 4.559 7 H 0.084 0.916 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.793 3.207 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.181 1.181 14 C 0.007 3.993 15 C -0.077 4.077 16 N -0.189 5.189 17 N -0.196 5.196 18 C -0.132 4.132 19 N -0.154 5.154 20 C -0.075 4.075 21 H 0.142 0.858 22 H 0.100 0.900 23 H 0.147 0.853 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.022 0.978 27 H -0.022 1.022 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.144 0.856 31 H 0.281 0.719 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.584 -17.740 -1.369 18.374 hybrid contribution -0.691 0.642 -0.321 0.997 sum -5.275 -17.098 -1.690 17.973 Atomic orbital electron populations 1.23950 0.95682 1.02336 1.00058 1.22840 0.96105 0.97101 1.00277 1.21223 0.95103 0.97498 0.90719 1.62024 1.13111 1.11586 1.38478 1.19379 0.95418 0.83622 0.93267 1.21421 0.95889 0.95519 1.43027 0.91594 1.25978 0.98980 0.99004 0.96075 1.70136 1.25307 1.12605 1.49379 0.85397 0.79366 0.77455 0.78480 1.20374 1.20822 1.18100 1.20437 0.91673 0.99525 0.87667 1.24849 0.96227 0.89002 0.97640 1.74181 1.15188 1.24109 1.05389 1.74069 1.25822 1.09113 1.10620 1.27219 0.90137 1.00288 0.95573 1.46330 1.27531 1.24805 1.16722 1.22505 0.87998 0.90490 1.06506 0.85791 0.89952 0.85285 0.91518 0.94343 0.97784 1.02223 0.92870 0.93465 0.85630 0.71895 0.87326 0.89003 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 14.32 67.78 0.97 -3.16 16 2 C -0.14 -3.60 9.33 25.65 0.24 -3.36 16 3 C 0.08 2.87 5.24 85.56 0.45 3.32 16 4 N -0.53 -21.77 4.34 -909.97 -3.95 -25.71 16 5 C 0.21 11.59 4.55 85.56 0.39 11.98 16 6 C -0.52 -30.10 8.23 25.60 0.21 -29.89 16 7 H 0.07 3.67 7.31 -2.91 -0.02 3.65 16 8 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 9 N -0.93 -59.46 13.29 21.45 0.28 -59.18 16 10 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 14 C 0.14 4.79 4.94 85.56 0.42 5.22 16 15 C 0.19 7.30 6.89 137.98 0.95 8.26 16 16 N -0.35 -16.23 11.77 -50.15 -0.59 -16.82 16 17 N -0.36 -14.83 12.21 -59.99 -0.73 -15.56 16 18 C 0.16 4.49 12.74 180.11 2.30 6.79 16 19 N -0.46 -12.88 3.15 -542.04 -1.71 -14.59 16 20 C 0.07 0.98 10.98 127.77 1.40 2.38 16 21 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 22 H 0.08 2.12 7.84 -2.91 -0.02 2.09 16 23 H 0.13 2.37 7.27 -2.91 -0.02 2.35 16 24 H 0.07 2.74 6.23 -2.39 -0.01 2.72 16 25 H 0.04 1.30 8.00 -2.39 -0.02 1.28 16 26 H 0.00 0.26 7.06 -2.38 -0.02 0.24 16 27 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.05 1.82 8.00 -2.39 -0.02 1.80 16 30 H 0.13 3.09 6.72 -2.39 -0.02 3.08 16 31 H 0.27 4.14 8.06 -2.91 -0.02 4.12 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.56 7.89 -2.39 -0.02 1.54 16 34 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -82.25 293.44 4.20 -78.05 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.08 Total: 4.35 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 7.79 Total: 1.85 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -6.69 Total: -131.86 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -82.25 4.20 -78.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562378958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.015 kcal (2) G-P(sol) polarization free energy of solvation -82.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds