Wall clock time and date at job start Sun Mar 29 2020 21:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36928 * 120.00225 * 2 1 4 4 H 1.07998 * 120.00149 * 172.35418 * 3 2 1 5 5 C 1.38811 * 119.99967 * 352.35486 * 3 2 1 6 6 N 1.31615 * 120.00318 * 7.63946 * 5 3 2 7 7 Si 1.86807 * 119.99889 * 187.64406 * 5 3 2 8 8 H 1.48506 * 109.47013 * 59.99947 * 7 5 3 9 9 H 1.48503 * 109.46905 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47231 * 299.99690 * 7 5 3 11 11 C 1.46498 * 119.99632 * 179.97438 * 2 1 3 12 12 C 1.50707 * 109.46757 * 87.42611 * 11 2 1 13 13 N 1.30829 * 125.95857 * 273.60650 * 12 11 2 14 14 C 1.33248 * 109.82829 * 179.97438 * 13 12 11 15 15 C 1.50693 * 125.52764 * 179.97438 * 14 13 12 16 16 C 1.53004 * 117.49767 * 188.76018 * 15 14 13 17 17 C 1.53003 * 117.49907 * 120.10376 * 15 14 13 18 18 N 1.30718 * 108.94488 * 0.02562 * 14 13 12 19 19 N 1.34428 * 125.95868 * 93.58951 * 12 11 2 20 20 C 1.46497 * 126.82733 * 0.02562 * 19 12 11 21 21 H 1.09000 * 109.47633 * 183.78113 * 1 2 3 22 22 H 1.08998 * 109.47152 * 303.78833 * 1 2 3 23 23 H 1.09004 * 109.46626 * 63.78458 * 1 2 3 24 24 H 0.97006 * 120.00267 * 180.02562 * 6 5 3 25 25 H 1.08996 * 109.47707 * 327.42740 * 11 2 1 26 26 H 1.09000 * 109.47216 * 207.42273 * 11 2 1 27 27 H 1.08998 * 115.55133 * 334.43569 * 15 14 13 28 28 H 1.09003 * 117.49889 * 0.02562 * 16 15 14 29 29 H 1.08999 * 117.49550 * 145.01973 * 16 15 14 30 30 H 1.09001 * 117.50065 * 214.97855 * 17 15 14 31 31 H 1.08999 * 117.49814 * 359.97438 * 17 15 14 32 32 H 1.08999 * 109.46981 * 275.51668 * 20 19 12 33 33 H 1.08999 * 109.46860 * 35.51941 * 20 19 12 34 34 H 1.08994 * 109.47084 * 155.51539 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2225 1.1900 0.1244 5 6 1.4649 2.3826 -0.1599 6 7 0.1488 2.3928 -0.1607 7 14 2.4115 3.9788 -0.3742 8 1 3.2652 3.8892 -1.5860 9 1 1.4552 5.1049 -0.5251 10 1 3.2663 4.2112 0.8176 11 6 2.1974 -1.2688 0.0006 12 6 2.3933 -1.7363 -1.4187 13 7 1.5464 -2.4486 -2.1167 14 6 2.0434 -2.6795 -3.3312 15 6 1.3615 -3.4648 -4.4217 16 6 2.1788 -3.7928 -5.6728 17 6 1.0694 -2.7402 -5.7372 18 7 3.2190 -2.1152 -3.4230 19 7 3.4684 -1.4939 -2.1884 20 6 4.6630 -0.7332 -1.8138 21 1 -0.3634 -1.0254 0.0678 22 1 -0.3633 0.5715 0.8541 23 1 -0.3633 0.4540 -0.9220 24 1 -0.3297 3.2292 -0.2729 25 1 1.6291 -2.0162 0.5541 26 1 3.1691 -1.1272 0.4738 27 1 0.6378 -4.2069 -4.0844 28 1 3.2099 -3.4409 -5.7070 29 1 1.9926 -4.7506 -6.1588 30 1 0.1537 -3.0058 -6.2655 31 1 1.3700 -1.6953 -5.8137 32 1 4.4821 0.3296 -1.9741 33 1 4.8905 -0.9086 -0.7623 34 1 5.5054 -1.0548 -2.4262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567045097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:57 Heat of formation + Delta-G solvation = 126.551239 kcal Electronic energy + Delta-G solvation = -16848.460672 eV Core-core repulsion = 14205.642796 eV Total energy + Delta-G solvation = -2642.817876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.95754 -38.25610 -37.48897 -34.67462 -33.75479 -31.83225 -28.76599 -28.15571 -27.54366 -24.59519 -23.67039 -23.25634 -21.34157 -20.64288 -18.86267 -17.87824 -17.26852 -16.60251 -16.34314 -15.81767 -15.47845 -15.10173 -14.94246 -14.21432 -14.08338 -13.68410 -13.23551 -13.09062 -12.86988 -12.67180 -12.57854 -12.40338 -12.19696 -12.04655 -11.93141 -11.70310 -11.44221 -10.87303 -10.68686 -10.58936 -10.05550 -9.13913 -7.81446 -5.28429 0.69098 1.44385 1.46548 1.52973 1.54959 1.88099 2.47445 2.93189 3.13648 3.31863 3.60590 3.70322 3.88545 3.92117 4.09966 4.26671 4.28704 4.36499 4.62640 4.73637 4.75067 4.81337 4.85092 4.91903 5.16092 5.24748 5.46846 5.50182 5.56060 5.59930 5.79359 6.00836 6.21187 7.06908 7.28657 7.75746 8.17479 9.16700 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.007121 C = 0.006970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.816337 B = 3930.986521 C = 4016.073188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.603 5.603 3 C -0.261 4.261 4 H 0.096 0.904 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.970 3.030 8 H -0.282 1.282 9 H -0.300 1.300 10 H -0.265 1.265 11 C 0.221 3.779 12 C 0.270 3.730 13 N -0.574 5.574 14 C 0.230 3.770 15 C -0.090 4.090 16 C -0.138 4.138 17 C -0.158 4.158 18 N -0.354 5.354 19 N -0.381 5.381 20 C 0.096 3.904 21 H 0.021 0.979 22 H 0.029 0.971 23 H 0.000 1.000 24 H 0.245 0.755 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.139 0.861 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.937 -9.953 -5.395 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.325 5.325 3 C -0.390 4.390 4 H 0.113 0.887 5 C -0.251 4.251 6 N -0.590 5.590 7 Si 0.798 3.202 8 H -0.208 1.208 9 H -0.227 1.227 10 H -0.190 1.190 11 C 0.090 3.910 12 C -0.010 4.010 13 N -0.304 5.304 14 C -0.051 4.051 15 C -0.110 4.110 16 C -0.176 4.176 17 C -0.196 4.196 18 N -0.184 5.184 19 N -0.170 5.170 20 C -0.045 4.045 21 H 0.039 0.961 22 H 0.047 0.953 23 H 0.018 0.982 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.156 0.844 28 H 0.107 0.893 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.066 -9.846 -5.826 13.447 hybrid contribution 0.123 1.492 0.001 1.497 sum 7.189 -8.354 -5.824 12.466 Atomic orbital electron populations 1.20673 0.81669 0.94160 0.98871 1.44275 1.02700 1.00997 1.84551 1.19724 0.92549 0.84022 1.42685 0.88655 1.25768 0.96485 1.01446 1.01440 1.70450 1.06750 1.25475 1.56287 0.85296 0.77415 0.79012 0.78499 1.20844 1.22690 1.19046 1.19777 0.99035 0.87843 0.84381 1.26730 0.83228 0.91675 0.99350 1.70249 1.31796 1.22896 1.05444 1.23758 0.90333 0.97457 0.93574 1.20229 1.03661 1.01976 0.85177 1.23073 0.96504 1.01105 0.96880 1.23063 1.01931 0.97424 0.97231 1.77662 1.19445 1.18385 1.02912 1.50373 1.17257 1.40458 1.08962 1.22143 0.83761 0.95159 1.03466 0.96096 0.95294 0.98172 0.94534 0.89072 0.88280 0.84360 0.89325 0.84735 0.85214 0.91078 0.91186 0.86826 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.92 9.00 127.77 1.15 11.07 16 2 N -0.60 -29.47 2.92 -731.31 -2.13 -31.60 16 3 C -0.26 -13.36 9.81 84.03 0.82 -12.54 16 4 H 0.10 4.39 7.80 -2.91 -0.02 4.36 16 5 C -0.06 -3.14 5.45 84.86 0.46 -2.67 16 6 N -0.94 -55.51 9.48 21.65 0.21 -55.31 16 7 Si 0.97 43.77 29.56 68.60 2.03 45.79 16 8 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 C 0.22 8.57 5.99 85.64 0.51 9.08 16 12 C 0.27 11.13 7.57 138.23 1.05 12.17 16 13 N -0.57 -25.01 11.19 -179.72 -2.01 -27.02 16 14 C 0.23 9.10 7.69 138.63 1.07 10.17 16 15 C -0.09 -2.67 6.33 -11.54 -0.07 -2.74 16 16 C -0.14 -3.13 10.14 30.62 0.31 -2.82 16 17 C -0.16 -4.01 10.24 30.62 0.31 -3.70 16 18 N -0.35 -14.06 12.24 -51.33 -0.63 -14.69 16 19 N -0.38 -14.54 4.04 -359.88 -1.45 -16.00 16 20 C 0.10 2.71 11.26 127.77 1.44 4.15 16 21 H 0.02 0.97 7.81 -2.39 -0.02 0.95 16 22 H 0.03 1.59 7.06 -2.39 -0.02 1.58 16 23 H 0.00 -0.02 7.05 -2.38 -0.02 -0.03 16 24 H 0.24 14.20 8.31 -92.70 -0.77 13.43 16 25 H 0.09 3.27 7.95 -2.39 -0.02 3.25 16 26 H 0.10 3.22 7.00 -2.39 -0.02 3.20 16 27 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 28 H 0.09 2.26 7.88 -2.39 -0.02 2.24 16 29 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 2.56 7.24 -2.39 -0.02 2.54 16 34 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -69.92 291.14 4.15 -65.77 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.09 Total: 10.88 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 7.05 Total: 22.16 kcal Atomic # 7 Polarization: -138.59 SS G_CDS: -6.02 Total: -144.61 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.92 4.15 -65.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567045097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.325 kcal (2) G-P(sol) polarization free energy of solvation -69.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds