Wall clock time and date at job start Sun Mar 29 2020 21:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47345 * 2 1 4 4 C 1.53002 * 109.47345 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.54708 * 29.33652 * 4 3 2 6 6 C 1.53069 * 117.51368 * 243.60935 * 4 3 2 7 7 C 1.52998 * 59.98634 * 252.52342 * 6 4 3 8 8 H 1.08991 * 117.50089 * 107.50139 * 7 6 4 9 9 N 1.46907 * 117.49888 * 252.50174 * 7 6 4 10 10 C 1.46900 * 110.99641 * 223.74329 * 9 7 6 11 11 C 1.53002 * 109.46619 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 55.00278 * 11 10 9 13 13 C 1.47194 * 109.47253 * 295.00217 * 11 10 9 14 14 N 8.43215 * 153.55387 * 351.64368 * 2 1 3 15 15 C 1.52997 * 109.46817 * 175.00098 * 11 10 9 16 16 C 1.50705 * 109.47390 * 184.99865 * 15 11 10 17 17 H 1.08000 * 119.99498 * 0.02562 * 16 15 11 18 18 C 1.37870 * 120.00441 * 180.02562 * 16 15 11 19 19 N 1.31513 * 119.99840 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00083 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47142 * 60.00110 * 20 18 16 22 22 H 1.48498 * 109.46868 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47038 * 299.99640 * 20 18 16 24 24 H 1.09004 * 109.46814 * 299.99729 * 1 2 3 25 25 H 1.08996 * 109.46935 * 59.99740 * 1 2 3 26 26 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46814 * 240.00271 * 2 1 3 28 28 H 1.08995 * 109.47458 * 120.00212 * 2 1 3 29 29 H 1.09004 * 109.46944 * 60.00350 * 3 2 1 30 30 H 1.09005 * 109.47416 * 300.00124 * 3 2 1 31 31 H 1.09004 * 117.51388 * 145.04723 * 6 4 3 32 32 H 1.08995 * 117.49767 * 0.02562 * 6 4 3 33 33 H 1.00900 * 110.99873 * 347.69741 * 9 7 6 34 34 H 1.09000 * 109.47154 * 60.00280 * 10 9 7 35 35 H 1.08996 * 109.47574 * 299.99823 * 10 9 7 36 36 H 1.09001 * 109.47630 * 305.00128 * 15 11 10 37 37 H 1.09004 * 109.47346 * 65.00258 * 15 11 10 38 38 H 0.97002 * 119.99729 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 4.0400 0.5851 -0.4828 6 6 4.2777 2.0457 1.2152 7 6 4.2765 2.7944 -0.1190 8 1 3.6513 3.6838 -0.1964 9 7 5.5361 2.8378 -0.8737 10 6 5.7856 4.1846 -1.4045 11 6 7.1034 4.1903 -2.1819 12 1 7.0748 3.4183 -2.9510 13 6 8.2185 3.9226 -1.2592 14 7 9.0798 3.7154 -0.5458 15 6 7.3020 5.5576 -2.8390 16 6 8.5358 5.5251 -3.7037 17 1 9.1197 4.6195 -3.7775 18 6 8.9193 6.6513 -4.4004 19 7 8.2081 7.7539 -4.3109 20 14 10.4484 6.6107 -5.4727 21 1 10.2876 5.5752 -6.5250 22 1 10.6411 7.9379 -6.1103 23 1 11.6314 6.2865 -4.6358 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6767 1.9563 -0.8900 31 1 5.2132 1.5853 1.5331 32 1 3.6530 2.4421 2.0156 33 1 6.3089 2.5241 -0.3057 34 1 5.8477 4.8945 -0.5798 35 1 4.9701 4.4701 -2.0690 36 1 6.4337 5.7950 -3.4537 37 1 7.4194 6.3181 -2.0669 38 1 8.4777 8.5461 -4.8014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567684212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:08 Heat of formation + Delta-G solvation = 17.299282 kcal Electronic energy + Delta-G solvation = -15762.459903 eV Core-core repulsion = 13218.444849 eV Total energy + Delta-G solvation = -2544.015053 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.60564 -36.86010 -34.82931 -33.87691 -32.79943 -30.73771 -27.43426 -26.15532 -22.90973 -22.26333 -21.87344 -21.04567 -20.40512 -16.72107 -16.54994 -15.80972 -15.43124 -15.21888 -14.62392 -14.03671 -13.63017 -13.20293 -13.10909 -12.93558 -12.66550 -12.29510 -12.17809 -12.04127 -11.78386 -11.47858 -11.27435 -11.14629 -11.02622 -10.97361 -10.79930 -10.58703 -10.50120 -10.20957 -9.99229 -9.52273 -9.23265 -8.45423 -8.12304 -6.09724 -4.13003 3.31384 3.35450 3.39064 3.54029 3.58735 3.74046 4.08681 4.41271 4.69997 4.78168 4.81790 4.86230 4.95258 5.06573 5.23676 5.28258 5.39561 5.52758 5.58405 5.61435 5.65941 5.69554 5.75515 5.81947 5.88509 6.07205 6.10167 6.14167 6.28968 6.39388 6.53321 7.13289 7.39135 7.43471 7.52386 7.85101 8.22691 8.38333 8.91268 9.52448 11.01159 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040129 B = 0.003822 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.581053 B = 7323.704146 C = 7664.760652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.141 4.141 5 H 0.107 0.893 6 C -0.207 4.207 7 C 0.031 3.969 8 H 0.110 0.890 9 N -0.661 5.661 10 C 0.069 3.931 11 C 0.006 3.994 12 H 0.111 0.889 13 C 0.241 3.759 14 N -0.477 5.477 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.340 0.660 34 H 0.037 0.963 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.263 -11.165 7.646 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.126 4.126 4 C -0.161 4.161 5 H 0.125 0.875 6 C -0.245 4.245 7 C -0.080 4.080 8 H 0.128 0.872 9 N -0.291 5.291 10 C -0.061 4.061 11 C -0.016 4.016 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.154 5.154 15 C -0.006 4.006 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.159 0.841 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.234 -11.504 8.059 19.298 hybrid contribution 0.912 0.636 -0.085 1.116 sum -12.321 -10.868 7.974 18.262 Atomic orbital electron populations 1.21788 0.96102 1.01442 1.01752 1.21499 0.95451 0.96881 1.02067 1.21191 0.92613 0.96868 1.01894 1.22616 0.94249 0.98058 1.01138 0.87532 1.23617 1.03017 1.05709 0.92202 1.22524 0.94544 0.95757 0.95201 0.87197 1.60310 1.03482 1.25937 1.39357 1.22134 0.97557 0.88101 0.98288 1.19346 0.84991 1.04222 0.93030 0.87085 1.29388 0.94139 0.91245 0.92826 1.81094 1.10794 1.11244 1.12233 1.19159 0.98350 0.87495 0.95561 1.21110 1.10013 0.97765 1.27673 0.92547 1.24950 0.96917 0.95407 0.96681 1.69928 1.38976 1.01861 1.42287 0.86645 0.83442 0.77240 0.80706 1.19990 1.21179 1.20276 0.92915 0.92690 0.92930 0.91880 0.92135 0.92125 0.91454 0.89011 0.88948 0.84100 0.94465 0.88867 0.94151 0.95727 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.96 5.89 -26.73 -0.16 -1.12 16 3 C -0.09 -0.77 5.50 -26.73 -0.15 -0.91 16 4 C -0.14 -1.45 5.67 -90.58 -0.51 -1.96 16 5 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 6 C -0.21 -2.14 9.88 -26.70 -0.26 -2.40 16 7 C 0.03 0.36 6.03 -67.71 -0.41 -0.05 16 8 H 0.11 1.22 7.90 -51.93 -0.41 0.81 16 9 N -0.66 -9.02 6.78 -106.72 -0.72 -9.74 16 10 C 0.07 1.03 4.97 -3.82 -0.02 1.01 16 11 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 12 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 13 C 0.24 4.90 12.98 -20.72 -0.27 4.63 16 14 N -0.48 -10.46 18.55 42.21 0.78 -9.67 16 15 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 16 C -0.53 -14.10 8.60 -34.44 -0.30 -14.40 16 17 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.50 7.88 -51.93 -0.41 0.09 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 33 H 0.34 4.81 7.59 -39.29 -0.30 4.51 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 324.22 15.07 4.89 4.89 Total: -1.00 -28.90 324.22 -8.05 -36.95 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.56 Total: -0.18 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.15 Total: -13.74 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.80 Total: -44.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.90 -8.05 -36.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567684212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.250 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds