Wall clock time and date at job start Sun Mar 29 2020 21:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47207 * 2 1 4 4 C 1.53003 * 109.46581 * 240.00119 * 2 1 3 5 5 C 1.50707 * 109.46771 * 170.45592 * 4 2 1 6 6 H 1.07996 * 120.00001 * 354.48031 * 5 4 2 7 7 C 1.37873 * 119.99945 * 174.48372 * 5 4 2 8 8 N 1.31516 * 120.00102 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47113 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46929 * 119.99875 * 9 7 5 12 12 H 1.48502 * 109.46845 * 239.99773 * 9 7 5 13 13 N 1.46896 * 109.47149 * 120.00438 * 2 1 3 14 14 C 1.46982 * 111.00344 * 192.34603 * 13 2 1 15 15 C 1.53451 * 109.64625 * 53.62279 * 14 13 2 16 16 N 1.46344 * 108.21471 * 49.42638 * 15 14 13 17 17 N 1.39488 * 129.20774 * 163.95641 * 16 15 14 18 18 C 1.31063 * 106.53596 * 180.35269 * 17 16 15 19 19 N 1.33544 * 109.02598 * 359.54246 * 18 17 16 20 20 C 1.30124 * 109.71491 * 0.23016 * 19 18 17 21 21 C 1.47350 * 110.99855 * 316.56186 * 13 2 1 22 22 H 1.08999 * 109.47942 * 187.67527 * 1 2 3 23 23 H 1.09004 * 109.47020 * 307.68235 * 1 2 3 24 24 H 1.09003 * 109.47282 * 67.67422 * 1 2 3 25 25 H 1.09001 * 109.47287 * 290.45125 * 4 2 1 26 26 H 1.08994 * 109.47257 * 50.45637 * 4 2 1 27 27 H 0.97001 * 120.00061 * 180.02562 * 8 7 5 28 28 H 1.08992 * 109.44737 * 173.68434 * 14 13 2 29 29 H 1.09007 * 109.44167 * 293.61152 * 14 13 2 30 30 H 1.09001 * 109.71702 * 169.11006 * 15 14 13 31 31 H 1.09007 * 109.71407 * 289.70703 * 15 14 13 32 32 H 1.08004 * 125.48196 * 179.81130 * 18 17 16 33 33 H 1.08998 * 109.73826 * 166.31566 * 21 13 2 34 34 H 1.08999 * 109.74179 * 45.61188 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5284 -0.5205 -1.3728 6 1 4.0436 0.1350 -0.6865 7 6 4.2323 -1.1738 -2.3621 8 7 3.6049 -1.9724 -3.1977 9 14 6.0772 -0.9244 -2.5157 10 1 6.5389 0.0160 -1.4632 11 1 6.7682 -2.2287 -2.3525 12 1 6.3910 -0.3619 -3.8537 13 7 2.0196 -0.6926 1.1993 14 6 3.4590 -0.4634 1.3892 15 6 3.7459 1.0440 1.3890 16 7 2.8093 1.6881 2.3108 17 7 2.8628 2.9629 2.8743 18 6 1.8040 3.0778 3.6382 19 7 1.0938 1.9489 3.5706 20 6 1.6850 1.1053 2.7755 21 6 1.2539 -0.2889 2.3918 22 1 -0.3635 -1.0184 0.1372 23 1 -0.3633 0.6282 0.8133 24 1 -0.3634 0.3904 -0.9506 25 1 1.8224 -1.7863 -1.1682 26 1 1.5441 -0.3153 -2.1310 27 1 4.1003 -2.4323 -3.8934 28 1 3.7723 -0.8923 2.3410 29 1 4.0120 -0.9375 0.5782 30 1 4.7690 1.2237 1.7193 31 1 3.6082 1.4444 0.3845 32 1 1.5452 3.9473 4.2242 33 1 1.4600 -0.9767 3.2118 34 1 0.1879 -0.2952 2.1643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567988316.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:50 Heat of formation + Delta-G solvation = 109.417604 kcal Electronic energy + Delta-G solvation = -17559.374773 eV Core-core repulsion = 14915.813926 eV Total energy + Delta-G solvation = -2643.560847 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.15593 -38.59316 -33.91794 -33.24468 -31.74443 -30.25436 -29.67908 -27.16431 -25.28600 -23.38348 -22.72918 -21.72196 -20.71598 -18.05131 -17.04460 -16.54696 -15.76645 -15.58710 -14.94425 -14.50894 -14.29714 -14.14363 -13.45506 -12.85302 -12.31946 -12.27536 -11.89146 -11.75928 -11.65444 -11.29754 -11.07554 -10.93628 -10.66891 -10.56326 -10.32303 -9.84616 -9.49274 -9.34084 -9.23276 -9.02043 -8.48009 -7.98834 -6.13850 -4.15371 1.86687 2.55116 3.13255 3.20478 3.28845 3.30201 4.21835 4.27567 4.31644 4.75426 5.02642 5.20492 5.20987 5.32974 5.53018 5.61378 5.70296 5.77300 5.85635 6.01152 6.07320 6.38422 6.50429 6.56708 6.63196 6.67527 6.79567 7.02449 7.23786 7.42972 7.52220 7.82586 7.91109 8.24009 8.34208 8.87436 9.45737 10.96853 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032514 B = 0.008493 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.954127 B = 3296.158080 C = 3832.144830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.075 3.925 3 H 0.033 0.967 4 C 0.031 3.969 5 C -0.532 4.532 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.882 3.118 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.506 5.506 14 C 0.028 3.972 15 C 0.084 3.916 16 N -0.365 5.365 17 N -0.324 5.324 18 C 0.181 3.819 19 N -0.545 5.545 20 C 0.246 3.754 21 C 0.117 3.883 22 H 0.064 0.936 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.036 0.964 26 H 0.019 0.981 27 H 0.261 0.739 28 H 0.069 0.931 29 H 0.158 0.842 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.213 0.787 33 H 0.104 0.896 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 3.469 9.433 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 H 0.051 0.949 4 C -0.006 4.006 5 C -0.570 4.570 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.710 3.290 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.227 5.227 14 C -0.101 4.101 15 C -0.039 4.039 16 N -0.157 5.157 17 N -0.152 5.152 18 C -0.121 4.121 19 N -0.274 5.274 20 C -0.032 4.032 21 C -0.014 4.014 22 H 0.083 0.917 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.175 0.825 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.229 0.771 33 H 0.121 0.879 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.245 3.318 9.190 10.025 hybrid contribution 1.309 1.096 -0.110 1.711 sum -0.936 4.414 9.080 10.139 Atomic orbital electron populations 1.22047 0.96057 1.01803 1.01041 1.22045 0.93468 0.95977 0.91720 0.94862 1.19157 0.95448 0.96768 0.89248 1.21455 0.93425 1.27298 1.14774 0.91763 1.24989 0.98067 0.95187 0.95661 1.69959 1.35720 1.28886 1.17723 0.86700 0.85971 0.78096 0.78270 1.19663 1.20812 1.20977 1.62500 1.02597 1.56301 1.01336 1.23331 0.90733 0.90592 1.05463 1.22987 0.92401 0.95682 0.92801 1.50413 1.19607 1.10232 1.35415 1.77836 1.23824 0.98090 1.15462 1.26033 0.89991 0.97639 0.98466 1.70201 1.32114 1.02342 1.22758 1.25574 0.85978 0.98882 0.92811 1.21527 1.01274 0.84153 0.94463 0.91686 0.93830 0.92166 0.94558 0.96285 0.92867 0.91293 0.82528 0.89046 0.87324 0.77108 0.87855 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.05 37.16 0.30 -2.20 16 2 C 0.07 1.42 1.89 -67.71 -0.13 1.30 16 3 H 0.03 0.68 5.51 -51.93 -0.29 0.40 16 4 C 0.03 0.72 4.63 -27.88 -0.13 0.59 16 5 C -0.53 -12.96 6.75 -34.44 -0.23 -13.19 16 6 H 0.06 1.45 3.56 -52.49 -0.19 1.26 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.88 -24.61 13.29 55.43 0.74 -23.87 16 9 Si 0.88 19.72 29.54 -169.99 -5.02 14.70 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.51 -8.71 4.83 -227.22 -1.10 -9.81 16 14 C 0.03 0.46 5.30 -3.55 -0.02 0.44 16 15 C 0.08 1.43 5.93 -3.89 -0.02 1.40 16 16 N -0.37 -6.48 3.88 -58.19 -0.23 -6.71 16 17 N -0.32 -5.77 12.76 29.41 0.38 -5.40 16 18 C 0.18 2.85 13.04 -91.25 -1.19 1.66 16 19 N -0.55 -9.30 11.18 -11.79 -0.13 -9.43 16 20 C 0.25 4.18 7.35 -155.77 -1.14 3.03 16 21 C 0.12 1.75 5.75 -4.63 -0.03 1.73 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.04 0.67 6.58 -51.93 -0.34 0.33 16 24 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.02 0.48 8.06 -51.93 -0.42 0.06 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.16 2.99 4.94 -51.93 -0.26 2.74 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.11 2.04 5.22 -51.92 -0.27 1.77 16 32 H 0.21 2.37 8.06 -52.48 -0.42 1.95 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.12 1.63 5.49 -51.93 -0.29 1.35 16 LS Contribution 265.38 15.07 4.00 4.00 Total: -1.00 -28.82 265.38 -8.19 -37.01 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.13 Total: 3.18 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.69 Total: -3.68 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.34 Total: -55.21 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.82 -8.19 -37.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567988316.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.429 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds