Wall clock time and date at job start Sun Mar 29 2020 21:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47207 * 2 1 4 4 C 1.53003 * 109.46581 * 240.00119 * 2 1 3 5 5 C 1.50707 * 109.46771 * 170.45592 * 4 2 1 6 6 H 1.07996 * 120.00001 * 354.48031 * 5 4 2 7 7 C 1.37873 * 119.99945 * 174.48372 * 5 4 2 8 8 N 1.31516 * 120.00102 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47113 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46929 * 119.99875 * 9 7 5 12 12 H 1.48502 * 109.46845 * 239.99773 * 9 7 5 13 13 N 1.46896 * 109.47149 * 120.00438 * 2 1 3 14 14 C 1.46982 * 111.00344 * 192.34603 * 13 2 1 15 15 C 1.53451 * 109.64625 * 53.62279 * 14 13 2 16 16 N 1.46344 * 108.21471 * 49.42638 * 15 14 13 17 17 N 1.39488 * 129.20774 * 163.95641 * 16 15 14 18 18 C 1.31063 * 106.53596 * 180.35269 * 17 16 15 19 19 N 1.33544 * 109.02598 * 359.54246 * 18 17 16 20 20 C 1.30124 * 109.71491 * 0.23016 * 19 18 17 21 21 C 1.47350 * 110.99855 * 316.56186 * 13 2 1 22 22 H 1.08999 * 109.47942 * 187.67527 * 1 2 3 23 23 H 1.09004 * 109.47020 * 307.68235 * 1 2 3 24 24 H 1.09003 * 109.47282 * 67.67422 * 1 2 3 25 25 H 1.09001 * 109.47287 * 290.45125 * 4 2 1 26 26 H 1.08994 * 109.47257 * 50.45637 * 4 2 1 27 27 H 0.97001 * 120.00061 * 180.02562 * 8 7 5 28 28 H 1.08992 * 109.44737 * 173.68434 * 14 13 2 29 29 H 1.09007 * 109.44167 * 293.61152 * 14 13 2 30 30 H 1.09001 * 109.71702 * 169.11006 * 15 14 13 31 31 H 1.09007 * 109.71407 * 289.70703 * 15 14 13 32 32 H 1.08004 * 125.48196 * 179.81130 * 18 17 16 33 33 H 1.08998 * 109.73826 * 166.31566 * 21 13 2 34 34 H 1.08999 * 109.74179 * 45.61188 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5284 -0.5205 -1.3728 6 1 4.0436 0.1350 -0.6865 7 6 4.2323 -1.1738 -2.3621 8 7 3.6049 -1.9724 -3.1977 9 14 6.0772 -0.9244 -2.5157 10 1 6.5389 0.0160 -1.4632 11 1 6.7682 -2.2287 -2.3525 12 1 6.3910 -0.3619 -3.8537 13 7 2.0196 -0.6926 1.1993 14 6 3.4590 -0.4634 1.3892 15 6 3.7459 1.0440 1.3890 16 7 2.8093 1.6881 2.3108 17 7 2.8628 2.9629 2.8743 18 6 1.8040 3.0778 3.6382 19 7 1.0938 1.9489 3.5706 20 6 1.6850 1.1053 2.7755 21 6 1.2539 -0.2889 2.3918 22 1 -0.3635 -1.0184 0.1372 23 1 -0.3633 0.6282 0.8133 24 1 -0.3634 0.3904 -0.9506 25 1 1.8224 -1.7863 -1.1682 26 1 1.5441 -0.3153 -2.1310 27 1 4.1003 -2.4323 -3.8934 28 1 3.7723 -0.8923 2.3410 29 1 4.0120 -0.9375 0.5782 30 1 4.7690 1.2237 1.7193 31 1 3.6082 1.4444 0.3845 32 1 1.5452 3.9473 4.2242 33 1 1.4600 -0.9767 3.2118 34 1 0.1879 -0.2952 2.1643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567988316.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:50 Heat of formation + Delta-G solvation = 90.948914 kcal Electronic energy + Delta-G solvation = -17560.175635 eV Core-core repulsion = 14915.813926 eV Total energy + Delta-G solvation = -2644.361709 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.43806 -39.99919 -35.45506 -34.87632 -33.27546 -31.58393 -31.14244 -28.80335 -26.68938 -24.85146 -24.34963 -23.00324 -22.16923 -19.46080 -18.79927 -17.89793 -17.18671 -16.99264 -16.61031 -16.02123 -15.55434 -15.50556 -14.89807 -14.19777 -14.00736 -13.67789 -13.51578 -13.24386 -13.09156 -12.92702 -12.65108 -12.38362 -12.33112 -12.20555 -11.88619 -11.14242 -11.04682 -10.98021 -10.73087 -10.49739 -10.45012 -9.41870 -8.12606 -6.18133 0.59225 1.27011 1.42432 1.45954 1.54000 1.89969 2.43997 2.88443 3.04514 3.22246 3.46871 3.84793 3.95290 3.99312 4.18913 4.31466 4.37740 4.42348 4.56384 4.67668 4.75515 4.98463 5.13029 5.16678 5.28214 5.29446 5.45980 5.49987 5.57102 5.75714 5.88360 6.07216 6.18269 6.31942 6.93665 7.07740 7.46452 8.99511 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032514 B = 0.008493 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.954127 B = 3296.158080 C = 3832.144830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.020 0.980 4 C 0.038 3.962 5 C -0.528 4.528 6 H 0.083 0.917 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.944 3.056 10 H -0.253 1.253 11 H -0.282 1.282 12 H -0.291 1.291 13 N -0.512 5.512 14 C 0.032 3.968 15 C 0.090 3.910 16 N -0.377 5.377 17 N -0.352 5.352 18 C 0.187 3.813 19 N -0.557 5.557 20 C 0.243 3.757 21 C 0.121 3.879 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.009 0.991 26 H -0.010 1.010 27 H 0.260 0.740 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.251 0.749 33 H 0.130 0.870 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 4.157 11.492 12.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 H 0.038 0.962 4 C 0.000 4.000 5 C -0.566 4.566 6 H 0.100 0.900 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.770 3.230 10 H -0.177 1.177 11 H -0.208 1.208 12 H -0.217 1.217 13 N -0.234 5.234 14 C -0.097 4.097 15 C -0.033 4.033 16 N -0.168 5.168 17 N -0.180 5.180 18 C -0.115 4.115 19 N -0.286 5.286 20 C -0.036 4.036 21 C -0.009 4.009 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.008 0.992 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.151 0.849 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.267 0.733 33 H 0.148 0.852 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.077 4.021 11.273 12.147 hybrid contribution 1.189 0.915 -0.692 1.652 sum -0.888 4.936 10.581 11.709 Atomic orbital electron populations 1.21978 0.94019 1.02742 1.01546 1.21723 0.95034 0.94443 0.90843 0.96231 1.18995 0.95169 0.95305 0.90510 1.21910 0.94104 1.26341 1.14208 0.89959 1.25788 1.02328 0.95247 0.95660 1.70099 1.37423 1.30657 1.18857 0.85714 0.80987 0.78189 0.78153 1.17685 1.20761 1.21733 1.62388 1.03140 1.56181 1.01642 1.23172 0.90258 0.90485 1.05758 1.22833 0.93244 0.95458 0.91773 1.50432 1.20018 1.10532 1.35844 1.77818 1.25203 0.98415 1.16596 1.26849 0.88847 0.98231 0.97543 1.70250 1.32379 1.02827 1.23124 1.25930 0.85673 0.99423 0.92568 1.21695 1.01437 0.83822 0.93970 0.90777 0.92180 0.92539 0.97262 0.99162 0.93141 0.88718 0.84935 0.87583 0.89672 0.73324 0.85205 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 8.05 71.98 0.58 -4.02 16 2 C 0.09 3.27 1.89 44.92 0.09 3.36 16 3 H 0.02 0.80 5.51 -2.39 -0.01 0.79 16 4 C 0.04 1.79 4.63 29.85 0.14 1.93 16 5 C -0.53 -26.00 6.75 25.60 0.17 -25.83 16 6 H 0.08 3.69 3.56 -2.91 -0.01 3.68 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -53.23 13.29 21.45 0.28 -52.94 16 9 Si 0.94 40.68 29.54 68.60 2.03 42.71 16 10 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.51 -16.81 4.83 -872.80 -4.21 -21.02 16 14 C 0.03 1.03 5.30 86.44 0.46 1.48 16 15 C 0.09 2.92 5.93 86.56 0.51 3.43 16 16 N -0.38 -12.61 3.88 -338.00 -1.31 -13.92 16 17 N -0.35 -11.80 12.76 -60.87 -0.78 -12.58 16 18 C 0.19 5.36 13.04 180.57 2.35 7.71 16 19 N -0.56 -17.34 11.18 -191.22 -2.14 -19.48 16 20 C 0.24 7.59 7.35 138.35 1.02 8.61 16 21 C 0.12 3.28 5.75 85.53 0.49 3.77 16 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.06 1.70 6.58 -2.39 -0.02 1.69 16 24 H 0.06 1.81 8.07 -2.39 -0.02 1.79 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 27 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.09 2.54 8.08 -2.39 -0.02 2.52 16 29 H 0.13 4.95 4.94 -2.38 -0.01 4.93 16 30 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.09 3.16 5.22 -2.38 -0.01 3.15 16 32 H 0.25 4.68 8.06 -2.91 -0.02 4.65 16 33 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.13 3.18 5.49 -2.39 -0.01 3.17 16 Total: -1.00 -62.14 265.38 1.26 -60.88 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.11 Total: 15.03 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 6.27 Total: 1.32 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -8.15 Total: -119.94 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -62.14 1.26 -60.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567988316.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.829 kcal (2) G-P(sol) polarization free energy of solvation -62.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds