Wall clock time and date at job start Sun Mar 29 2020 21:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.53003 * 109.47574 * 120.00340 * 2 1 3 5 5 C 1.50700 * 109.47086 * 195.93236 * 4 2 1 6 6 H 1.07999 * 119.99991 * 5.72861 * 5 4 2 7 7 C 1.37876 * 119.99276 * 185.72320 * 5 4 2 8 8 N 1.31511 * 120.00581 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99404 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47234 * 90.00386 * 9 7 5 11 11 H 1.48504 * 109.47327 * 210.00308 * 9 7 5 12 12 H 1.48495 * 109.47474 * 330.00320 * 9 7 5 13 13 N 1.46905 * 109.46797 * 240.00311 * 2 1 3 14 14 C 1.46983 * 110.99963 * 43.83964 * 13 2 1 15 15 C 1.53453 * 109.64579 * 53.62605 * 14 13 2 16 16 N 1.46340 * 108.21820 * 49.42665 * 15 14 13 17 17 N 1.39488 * 129.21120 * 163.95708 * 16 15 14 18 18 C 1.31062 * 106.53868 * 180.34827 * 17 16 15 19 19 N 1.33542 * 109.02557 * 359.54244 * 18 17 16 20 20 C 1.30135 * 109.71681 * 0.22833 * 19 18 17 21 21 C 1.47353 * 111.00044 * 168.05479 * 13 2 1 22 22 H 1.08999 * 109.47456 * 59.99615 * 1 2 3 23 23 H 1.08998 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47063 * 299.99831 * 1 2 3 25 25 H 1.08995 * 109.46478 * 315.93379 * 4 2 1 26 26 H 1.09001 * 109.46779 * 75.92755 * 4 2 1 27 27 H 0.96998 * 119.99884 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.44374 * 173.68105 * 14 13 2 29 29 H 1.09002 * 109.44415 * 293.60764 * 14 13 2 30 30 H 1.09001 * 109.70968 * 169.10473 * 15 14 13 31 31 H 1.08993 * 109.71318 * 289.74655 * 15 14 13 32 32 H 1.07999 * 125.48799 * 179.80868 * 18 17 16 33 33 H 1.08999 * 109.73981 * 166.31479 * 21 13 2 34 34 H 1.09001 * 109.77632 * 45.63155 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.4956 -0.3926 1.4599 6 1 3.9817 0.3358 0.8277 7 6 4.2066 -1.0217 2.4597 8 7 3.6147 -1.9090 3.2292 9 14 6.0106 -0.6138 2.7214 10 1 6.1294 0.5097 3.6852 11 1 6.7144 -1.8051 3.2606 12 1 6.6224 -0.2216 1.4263 13 7 2.0196 -0.6925 -1.1995 14 6 1.2619 -0.2825 -2.3905 15 6 1.2804 1.2470 -2.5124 16 7 2.6652 1.7002 -2.3763 17 7 3.2261 2.9334 -2.7085 18 6 4.4999 2.8565 -2.4094 19 7 4.7557 1.6481 -1.9018 20 6 3.6623 0.9430 -1.8744 21 6 3.4645 -0.4705 -1.3846 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.4650 -0.3967 2.1163 26 1 1.9256 -1.7975 1.1195 27 1 4.1151 -2.3518 3.9323 28 1 1.7156 -0.7228 -3.2784 29 1 0.2315 -0.6265 -2.3012 30 1 0.8907 1.5429 -3.4865 31 1 0.6706 1.6862 -1.7230 32 1 5.2249 3.6450 -2.5471 33 1 3.8535 -1.1733 -2.1214 34 1 3.9831 -0.6074 -0.4357 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567988317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:52 Heat of formation + Delta-G solvation = 106.994193 kcal Electronic energy + Delta-G solvation = -17614.189182 eV Core-core repulsion = 14970.523248 eV Total energy + Delta-G solvation = -2643.665934 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.04922 -38.57585 -34.12916 -32.65414 -32.02179 -30.04649 -29.75534 -27.24131 -24.87625 -23.85475 -22.57038 -21.62437 -20.51722 -18.19854 -16.91672 -16.49706 -15.82076 -15.64644 -14.94072 -14.41467 -14.25904 -14.04647 -13.41381 -12.71551 -12.43402 -12.18214 -11.90158 -11.70211 -11.56713 -11.37212 -11.25233 -10.93293 -10.56075 -10.47620 -10.32775 -9.67044 -9.44339 -9.23683 -9.12343 -8.94639 -8.38564 -8.04481 -6.06057 -4.07469 1.96506 2.55780 3.31569 3.34076 3.40632 3.48773 4.20571 4.43915 4.44606 4.61543 4.90948 5.07569 5.20559 5.28571 5.47341 5.61475 5.64553 5.69943 5.81663 5.94289 5.99023 6.29341 6.51838 6.64249 6.74944 6.76121 6.80679 7.15628 7.22586 7.44897 7.60638 7.87242 7.96148 8.32400 8.49661 8.96650 9.55015 11.03863 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.010617 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.507119 B = 2636.570248 C = 3505.091888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.077 3.923 3 H 0.032 0.968 4 C 0.030 3.970 5 C -0.529 4.529 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.882 3.118 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.508 5.508 14 C 0.032 3.968 15 C 0.090 3.910 16 N -0.381 5.381 17 N -0.332 5.332 18 C 0.188 3.812 19 N -0.538 5.538 20 C 0.269 3.731 21 C 0.095 3.905 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.019 0.981 26 H 0.038 0.962 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.212 0.788 33 H 0.097 0.903 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 3.425 -10.560 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 H 0.050 0.950 4 C -0.007 4.007 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.230 5.230 14 C -0.098 4.098 15 C -0.035 4.035 16 N -0.173 5.173 17 N -0.160 5.160 18 C -0.115 4.115 19 N -0.266 5.266 20 C -0.009 4.009 21 C -0.035 4.035 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.229 0.771 33 H 0.115 0.885 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.780 3.308 -10.546 12.041 hybrid contribution 0.978 1.229 0.059 1.572 sum -3.802 4.537 -10.487 12.042 Atomic orbital electron populations 1.22127 0.96064 1.02163 1.00676 1.22014 0.93211 0.95990 0.91780 0.94974 1.19169 0.95459 0.96821 0.89235 1.21262 0.95728 1.23565 1.16056 0.91869 1.24972 0.98249 0.94799 0.95660 1.69954 1.36549 1.26333 1.19546 0.86726 0.85381 0.77865 0.79132 1.20770 1.21161 1.18919 1.62477 1.01993 1.56670 1.01849 1.22806 1.01971 0.89620 0.95388 1.22744 0.78785 0.98163 1.03771 1.50201 1.09856 1.09778 1.47464 1.77757 1.10560 1.01603 1.26089 1.26061 0.92385 0.95662 0.97356 1.70276 1.27487 1.04561 1.24254 1.25732 0.83723 0.98213 0.93273 1.22311 0.90584 0.83407 1.07208 0.93802 0.91724 0.92270 0.96311 0.94411 0.92860 0.90077 0.87625 0.89186 0.89135 0.77121 0.88545 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.06 37.16 0.30 -2.04 16 2 C 0.08 1.48 1.58 -67.71 -0.11 1.37 16 3 H 0.03 0.69 6.39 -51.93 -0.33 0.36 16 4 C 0.03 0.73 4.61 -27.88 -0.13 0.60 16 5 C -0.53 -13.92 6.79 -34.44 -0.23 -14.15 16 6 H 0.06 1.68 5.92 -52.49 -0.31 1.37 16 7 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 9 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.51 -8.80 4.83 -227.21 -1.10 -9.89 16 14 C 0.03 0.42 5.33 -3.54 -0.02 0.40 16 15 C 0.09 1.23 6.38 -3.89 -0.02 1.21 16 16 N -0.38 -6.73 3.84 -58.19 -0.22 -6.96 16 17 N -0.33 -6.03 12.76 29.41 0.38 -5.65 16 18 C 0.19 3.28 13.04 -91.25 -1.19 2.09 16 19 N -0.54 -10.82 11.18 -11.79 -0.13 -10.95 16 20 C 0.27 5.18 6.82 -155.76 -1.06 4.11 16 21 C 0.09 1.78 5.74 -4.63 -0.03 1.75 16 22 H 0.04 0.55 4.85 -51.93 -0.25 0.29 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.02 0.48 8.04 -51.93 -0.42 0.06 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.11 1.15 6.67 -51.93 -0.35 0.80 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.26 5.72 -51.93 -0.30 0.96 16 32 H 0.21 2.73 8.06 -52.49 -0.42 2.31 16 33 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.18 3.90 3.81 -51.93 -0.20 3.71 16 LS Contribution 267.09 15.07 4.02 4.02 Total: -1.00 -30.84 267.09 -8.17 -39.01 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.24 Total: 1.80 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.59 Total: -2.94 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.34 Total: -58.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.84 -8.17 -39.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567988317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.008 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds