Wall clock time and date at job start Sun Mar 29 2020 21:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.53003 * 109.47574 * 120.00340 * 2 1 3 5 5 C 1.50700 * 109.47086 * 195.93236 * 4 2 1 6 6 H 1.07999 * 119.99991 * 5.72861 * 5 4 2 7 7 C 1.37876 * 119.99276 * 185.72320 * 5 4 2 8 8 N 1.31511 * 120.00581 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99404 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47234 * 90.00386 * 9 7 5 11 11 H 1.48504 * 109.47327 * 210.00308 * 9 7 5 12 12 H 1.48495 * 109.47474 * 330.00320 * 9 7 5 13 13 N 1.46905 * 109.46797 * 240.00311 * 2 1 3 14 14 C 1.46983 * 110.99963 * 43.83964 * 13 2 1 15 15 C 1.53453 * 109.64579 * 53.62605 * 14 13 2 16 16 N 1.46340 * 108.21820 * 49.42665 * 15 14 13 17 17 N 1.39488 * 129.21120 * 163.95708 * 16 15 14 18 18 C 1.31062 * 106.53868 * 180.34827 * 17 16 15 19 19 N 1.33542 * 109.02557 * 359.54244 * 18 17 16 20 20 C 1.30135 * 109.71681 * 0.22833 * 19 18 17 21 21 C 1.47353 * 111.00044 * 168.05479 * 13 2 1 22 22 H 1.08999 * 109.47456 * 59.99615 * 1 2 3 23 23 H 1.08998 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47063 * 299.99831 * 1 2 3 25 25 H 1.08995 * 109.46478 * 315.93379 * 4 2 1 26 26 H 1.09001 * 109.46779 * 75.92755 * 4 2 1 27 27 H 0.96998 * 119.99884 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.44374 * 173.68105 * 14 13 2 29 29 H 1.09002 * 109.44415 * 293.60764 * 14 13 2 30 30 H 1.09001 * 109.70968 * 169.10473 * 15 14 13 31 31 H 1.08993 * 109.71318 * 289.74655 * 15 14 13 32 32 H 1.07999 * 125.48799 * 179.80868 * 18 17 16 33 33 H 1.08999 * 109.73981 * 166.31479 * 21 13 2 34 34 H 1.09001 * 109.77632 * 45.63155 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.4956 -0.3926 1.4599 6 1 3.9817 0.3358 0.8277 7 6 4.2066 -1.0217 2.4597 8 7 3.6147 -1.9090 3.2292 9 14 6.0106 -0.6138 2.7214 10 1 6.1294 0.5097 3.6852 11 1 6.7144 -1.8051 3.2606 12 1 6.6224 -0.2216 1.4263 13 7 2.0196 -0.6925 -1.1995 14 6 1.2619 -0.2825 -2.3905 15 6 1.2804 1.2470 -2.5124 16 7 2.6652 1.7002 -2.3763 17 7 3.2261 2.9334 -2.7085 18 6 4.4999 2.8565 -2.4094 19 7 4.7557 1.6481 -1.9018 20 6 3.6623 0.9430 -1.8744 21 6 3.4645 -0.4705 -1.3846 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.4650 -0.3967 2.1163 26 1 1.9256 -1.7975 1.1195 27 1 4.1151 -2.3518 3.9323 28 1 1.7156 -0.7228 -3.2784 29 1 0.2315 -0.6265 -2.3012 30 1 0.8907 1.5429 -3.4865 31 1 0.6706 1.6862 -1.7230 32 1 5.2249 3.6450 -2.5471 33 1 3.8535 -1.1733 -2.1214 34 1 3.9831 -0.6074 -0.4357 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567988317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:52 Heat of formation + Delta-G solvation = 86.125315 kcal Electronic energy + Delta-G solvation = -17615.094124 eV Core-core repulsion = 14970.523248 eV Total energy + Delta-G solvation = -2644.570876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.40957 -39.95337 -35.75399 -34.35315 -33.53820 -31.51901 -31.10280 -28.94204 -26.26638 -25.31913 -24.23557 -22.96193 -21.99057 -19.63903 -18.71253 -17.95037 -17.22213 -17.02527 -16.59235 -16.06905 -15.55989 -15.42315 -14.86845 -14.17505 -13.83701 -13.71045 -13.47726 -13.28071 -13.07951 -12.92898 -12.70081 -12.60426 -12.30933 -12.03289 -11.99905 -11.12383 -11.06698 -11.01782 -10.72378 -10.53486 -10.34280 -9.44238 -8.16997 -6.21845 0.58373 1.31975 1.39359 1.42273 1.54375 1.92977 2.42686 2.87050 3.13821 3.17394 3.40775 3.84467 3.96432 4.02867 4.25127 4.26933 4.37870 4.50772 4.58868 4.62880 4.80598 4.94545 5.13444 5.19578 5.31910 5.34100 5.45558 5.49848 5.55313 5.78773 5.85240 6.04783 6.21588 6.31945 6.90019 7.12044 7.42822 8.93744 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.010617 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.507119 B = 2636.570248 C = 3505.091888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.091 3.909 3 H 0.009 0.991 4 C 0.036 3.964 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.016 3.984 8 N -0.922 5.922 9 Si 0.938 3.062 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.264 1.264 13 N -0.514 5.514 14 C 0.035 3.965 15 C 0.082 3.918 16 N -0.380 5.380 17 N -0.343 5.343 18 C 0.184 3.816 19 N -0.572 5.572 20 C 0.255 3.745 21 C 0.099 3.901 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.054 0.946 25 H -0.006 1.006 26 H 0.014 0.986 27 H 0.262 0.738 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.247 0.753 33 H 0.116 0.884 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 4.056 -12.421 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 H 0.027 0.973 4 C -0.001 4.001 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.764 3.236 10 H -0.208 1.208 11 H -0.205 1.205 12 H -0.189 1.189 13 N -0.236 5.236 14 C -0.094 4.094 15 C -0.040 4.040 16 N -0.172 5.172 17 N -0.172 5.172 18 C -0.118 4.118 19 N -0.301 5.301 20 C -0.024 4.024 21 C -0.032 4.032 22 H 0.099 0.901 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.263 0.737 33 H 0.134 0.866 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.607 3.944 -12.424 14.189 hybrid contribution 1.201 1.059 0.584 1.705 sum -4.405 5.003 -11.839 13.587 Atomic orbital electron populations 1.22071 0.92779 1.03128 1.02368 1.21664 0.95674 0.93741 0.90618 0.97302 1.19019 0.94252 0.95755 0.91095 1.21537 0.96907 1.22593 1.15258 0.92427 1.25662 1.01816 0.95022 0.95785 1.70051 1.37929 1.27723 1.20441 0.85836 0.81326 0.77629 0.78770 1.20782 1.20539 1.18868 1.62374 1.01573 1.56690 1.02938 1.23009 1.03150 0.89384 0.93840 1.23075 0.77032 0.98323 1.05586 1.50455 1.10820 1.09282 1.46606 1.77710 1.10929 1.01990 1.26530 1.26781 0.92925 0.95665 0.96388 1.70243 1.28636 1.05865 1.25324 1.25695 0.84323 0.98442 0.93899 1.22029 0.91425 0.84080 1.05639 0.90116 0.91084 0.92660 0.98823 0.96766 0.92853 0.88318 0.84432 0.86047 0.89009 0.73687 0.86643 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.06 71.98 0.58 -3.56 16 2 C 0.09 3.42 1.58 44.91 0.07 3.49 16 3 H 0.01 0.38 6.39 -2.39 -0.02 0.36 16 4 C 0.04 1.78 4.61 29.85 0.14 1.92 16 5 C -0.53 -28.38 6.79 25.60 0.17 -28.20 16 6 H 0.06 3.15 5.92 -2.91 -0.02 3.13 16 7 C 0.02 0.91 5.46 84.65 0.46 1.37 16 8 N -0.92 -54.22 13.29 21.45 0.28 -53.93 16 9 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.51 -16.96 4.83 -872.75 -4.21 -21.17 16 14 C 0.03 0.78 5.33 86.44 0.46 1.24 16 15 C 0.08 1.97 6.38 86.56 0.55 2.52 16 16 N -0.38 -12.60 3.84 -338.02 -1.30 -13.90 16 17 N -0.34 -11.78 12.76 -60.87 -0.78 -12.56 16 18 C 0.18 6.15 13.04 180.57 2.35 8.50 16 19 N -0.57 -22.57 11.18 -191.22 -2.14 -24.71 16 20 C 0.25 9.56 6.82 138.34 0.94 10.51 16 21 C 0.10 3.65 5.74 85.53 0.49 4.14 16 22 H 0.08 1.68 4.85 -2.39 -0.01 1.67 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 25 H -0.01 -0.35 8.04 -2.39 -0.02 -0.37 16 26 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.10 1.95 8.08 -2.39 -0.02 1.93 16 29 H 0.14 2.27 6.67 -2.39 -0.02 2.26 16 30 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 2.21 5.72 -2.39 -0.01 2.19 16 32 H 0.25 5.83 8.06 -2.91 -0.02 5.80 16 33 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 34 H 0.14 6.22 3.81 -2.39 -0.01 6.21 16 Total: -1.00 -68.27 267.09 1.22 -67.04 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.11 Total: 10.72 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 6.23 Total: 1.94 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -8.14 Total: -126.28 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.27 1.22 -67.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567988317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.169 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds