Wall clock time and date at job start Sun Mar 29 2020 21:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47051 * 2 1 4 4 C 1.52999 * 109.46841 * 240.00106 * 2 1 3 5 5 C 1.50701 * 109.46913 * 170.67023 * 4 2 1 6 6 H 1.08002 * 120.00104 * 354.37632 * 5 4 2 7 7 C 1.37875 * 120.00168 * 174.37098 * 5 4 2 8 8 N 1.31510 * 120.00236 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99844 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47004 * 89.99920 * 9 7 5 11 11 H 1.48498 * 109.47196 * 209.99918 * 9 7 5 12 12 H 1.48497 * 109.46980 * 330.00015 * 9 7 5 13 13 N 1.46899 * 109.47070 * 119.99590 * 2 1 3 14 14 C 1.46920 * 110.98158 * 191.44521 * 13 2 1 15 15 C 1.53574 * 109.72779 * 53.01248 * 14 13 2 16 16 C 1.50650 * 107.79624 * 49.04904 * 15 14 13 17 17 N 1.32624 * 130.06394 * 164.09270 * 16 15 14 18 18 N 1.29105 * 108.59817 * 180.31991 * 17 16 15 19 19 N 1.29189 * 110.27307 * 359.97237 * 18 17 16 20 20 H 0.97000 * 126.00420 * 179.90065 * 19 18 17 21 21 C 1.34188 * 107.98015 * 359.90044 * 19 18 17 22 22 C 1.47353 * 111.00392 * 316.08376 * 13 2 1 23 23 H 1.08995 * 109.47213 * 59.99652 * 1 2 3 24 24 H 1.08994 * 109.47328 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47235 * 300.00060 * 1 2 3 26 26 H 1.08998 * 109.46993 * 290.66663 * 4 2 1 27 27 H 1.08997 * 109.47504 * 50.67181 * 4 2 1 28 28 H 0.97006 * 120.00208 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.43867 * 292.92654 * 14 13 2 30 30 H 1.09005 * 109.37196 * 173.05289 * 14 13 2 31 31 H 1.09008 * 109.79328 * 289.48306 * 15 14 13 32 32 H 1.08997 * 109.79528 * 168.62817 * 15 14 13 33 33 H 1.09005 * 109.71625 * 167.09437 * 22 13 2 34 34 H 1.08999 * 109.71243 * 46.46219 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5292 -0.5249 -1.3699 6 1 4.0450 0.1296 -0.6828 7 6 4.2333 -1.1808 -2.3572 8 7 5.5331 -1.0099 -2.4622 9 14 3.3411 -2.3124 -3.5460 10 1 2.8928 -1.5339 -4.7284 11 1 4.2599 -3.3935 -3.9845 12 1 2.1613 -2.9093 -2.8701 13 7 2.0197 -0.6924 1.1995 14 6 3.4626 -0.4806 1.3770 15 6 3.7728 1.0233 1.3513 16 6 2.8141 1.7073 2.2906 17 7 2.8579 2.9229 2.8192 18 7 1.8235 3.0806 3.5755 19 7 1.0955 2.0134 3.5664 20 1 0.2679 1.8835 4.0555 21 6 1.6855 1.1163 2.7615 22 6 1.2614 -0.2801 2.3938 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8191 -1.7856 -1.1699 27 1 1.5470 -0.3127 -2.1314 28 1 6.0285 -1.4717 -3.1567 29 1 4.0039 -0.9763 0.5711 30 1 3.7744 -0.8987 2.3341 31 1 3.6392 1.4105 0.3411 32 1 4.7977 1.1945 1.6805 33 1 1.4771 -0.9592 3.2188 34 1 0.1938 -0.2945 2.1746 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571050386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:47 Heat of formation + Delta-G solvation = 114.641367 kcal Electronic energy + Delta-G solvation = -17546.279604 eV Core-core repulsion = 14902.945277 eV Total energy + Delta-G solvation = -2643.334327 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.24694 -38.78563 -33.81799 -33.44963 -32.20102 -30.38307 -29.81219 -27.60214 -24.97694 -23.15055 -22.78702 -22.17035 -20.71090 -18.25352 -18.03901 -16.90479 -16.06154 -15.43721 -14.85266 -14.51639 -13.90341 -13.59205 -13.49668 -12.66381 -12.42299 -12.17793 -11.91672 -11.65480 -11.48903 -11.42049 -11.02153 -10.88624 -10.59717 -10.47396 -10.35883 -9.97635 -9.75996 -9.43398 -8.98644 -8.57983 -8.49771 -7.80442 -6.04058 -4.00455 1.71195 2.77568 2.85854 3.31926 3.40506 3.44076 4.32587 4.46448 4.60122 4.94580 5.17844 5.29031 5.33369 5.49066 5.59915 5.65965 5.79529 5.90982 5.94986 6.02634 6.27291 6.31828 6.41087 6.54622 6.70018 6.79504 6.97186 7.11852 7.15108 7.29670 7.63748 7.77108 7.83509 8.51074 8.64946 8.97194 9.57707 11.06609 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.008049 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.485849 B = 3477.889217 C = 3883.954182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.084 3.916 3 H 0.046 0.954 4 C -0.008 4.008 5 C -0.530 4.530 6 H 0.095 0.905 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.502 5.502 14 C 0.042 3.958 15 C -0.073 4.073 16 C -0.006 4.006 17 N -0.260 5.260 18 N -0.108 5.108 19 N -0.384 5.384 20 H 0.443 0.557 21 C -0.050 4.050 22 C 0.113 3.887 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.042 0.958 26 H 0.030 0.970 27 H 0.014 0.986 28 H 0.263 0.737 29 H 0.147 0.853 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 0.160 9.457 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 H 0.064 0.936 4 C -0.045 4.045 5 C -0.568 4.568 6 H 0.112 0.888 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.224 5.224 14 C -0.086 4.086 15 C -0.114 4.114 16 C -0.147 4.147 17 N -0.126 5.126 18 N -0.086 5.086 19 N -0.103 5.103 20 H 0.288 0.712 21 C -0.188 4.188 22 C -0.018 4.018 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.164 0.836 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.621 1.073 9.761 13.748 hybrid contribution -0.967 -0.670 -0.555 1.301 sum -10.588 0.403 9.206 14.036 Atomic orbital electron populations 1.22085 0.96777 1.01694 1.00448 1.21744 0.92530 0.96884 0.91241 0.93585 1.19643 0.97287 0.96468 0.91149 1.21527 0.91033 1.28267 1.15946 0.88755 1.24995 0.94656 0.96397 0.97085 1.69897 1.06622 1.43393 1.33961 0.86866 0.80151 0.81078 0.81696 1.20662 1.21628 1.18854 1.62521 1.04096 1.55276 1.00459 1.22951 0.88254 0.93191 1.04197 1.20903 0.96512 0.96381 0.97572 1.22055 0.97823 0.91882 1.02897 1.74718 1.13354 1.16836 1.07648 1.78539 1.01412 1.08332 1.20360 1.44627 1.21406 1.10843 1.33387 0.71243 1.23318 0.97853 0.98174 0.99426 1.21259 1.00173 0.85356 0.94982 0.92510 0.92083 0.93953 0.95145 0.96757 0.92755 0.83580 0.92509 0.87680 0.89914 0.89186 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.39 37.16 0.31 -1.97 16 2 C 0.08 1.53 1.88 -67.71 -0.13 1.41 16 3 H 0.05 0.93 5.32 -51.93 -0.28 0.65 16 4 C -0.01 -0.17 3.72 -27.88 -0.10 -0.28 16 5 C -0.53 -13.43 7.22 -34.44 -0.25 -13.68 16 6 H 0.09 2.43 3.66 -52.49 -0.19 2.23 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -25.95 13.96 55.43 0.77 -25.18 16 9 Si 0.87 20.75 27.58 -169.99 -4.69 16.06 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.26 -6.04 6.38 56.52 0.36 -5.68 16 13 N -0.50 -8.49 4.80 -227.42 -1.09 -9.58 16 14 C 0.04 0.75 5.25 -3.52 -0.02 0.74 16 15 C -0.07 -1.36 5.03 -27.61 -0.14 -1.50 16 16 C -0.01 -0.11 6.58 -83.14 -0.55 -0.66 16 17 N -0.26 -4.94 12.39 33.17 0.41 -4.53 16 18 N -0.11 -1.78 13.40 60.35 0.81 -0.98 16 19 N -0.38 -4.93 6.96 33.39 0.23 -4.70 16 20 H 0.44 3.58 8.96 -190.02 -1.70 1.88 16 21 C -0.05 -0.73 6.87 -82.52 -0.57 -1.30 16 22 C 0.11 1.50 5.70 -4.82 -0.03 1.47 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.55 6.05 -51.93 -0.31 0.23 16 26 H 0.03 0.69 6.80 -51.93 -0.35 0.34 16 27 H 0.01 0.32 7.82 -51.93 -0.41 -0.09 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.15 3.15 4.99 -51.93 -0.26 2.89 16 30 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.11 2.19 5.14 -51.92 -0.27 1.93 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.07 5.37 -51.93 -0.28 0.79 16 LS Contribution 258.89 15.07 3.90 3.90 Total: -1.00 -30.11 258.89 -6.55 -36.66 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.34 Total: 2.31 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -1.56 Total: -13.96 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 1.13 Total: -44.96 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.69 Total: 16.06 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.11 -6.55 -36.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571050386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.302 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds