Wall clock time and date at job start Sun Mar 29 2020 21:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47051 * 2 1 4 4 C 1.52999 * 109.46841 * 240.00106 * 2 1 3 5 5 C 1.50701 * 109.46913 * 170.67023 * 4 2 1 6 6 H 1.08002 * 120.00104 * 354.37632 * 5 4 2 7 7 C 1.37875 * 120.00168 * 174.37098 * 5 4 2 8 8 N 1.31510 * 120.00236 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99844 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47004 * 89.99920 * 9 7 5 11 11 H 1.48498 * 109.47196 * 209.99918 * 9 7 5 12 12 H 1.48497 * 109.46980 * 330.00015 * 9 7 5 13 13 N 1.46899 * 109.47070 * 119.99590 * 2 1 3 14 14 C 1.46920 * 110.98158 * 191.44521 * 13 2 1 15 15 C 1.53574 * 109.72779 * 53.01248 * 14 13 2 16 16 C 1.50650 * 107.79624 * 49.04904 * 15 14 13 17 17 N 1.32624 * 130.06394 * 164.09270 * 16 15 14 18 18 N 1.29105 * 108.59817 * 180.31991 * 17 16 15 19 19 N 1.29189 * 110.27307 * 359.97237 * 18 17 16 20 20 H 0.97000 * 126.00420 * 179.90065 * 19 18 17 21 21 C 1.34188 * 107.98015 * 359.90044 * 19 18 17 22 22 C 1.47353 * 111.00392 * 316.08376 * 13 2 1 23 23 H 1.08995 * 109.47213 * 59.99652 * 1 2 3 24 24 H 1.08994 * 109.47328 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47235 * 300.00060 * 1 2 3 26 26 H 1.08998 * 109.46993 * 290.66663 * 4 2 1 27 27 H 1.08997 * 109.47504 * 50.67181 * 4 2 1 28 28 H 0.97006 * 120.00208 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.43867 * 292.92654 * 14 13 2 30 30 H 1.09005 * 109.37196 * 173.05289 * 14 13 2 31 31 H 1.09008 * 109.79328 * 289.48306 * 15 14 13 32 32 H 1.08997 * 109.79528 * 168.62817 * 15 14 13 33 33 H 1.09005 * 109.71625 * 167.09437 * 22 13 2 34 34 H 1.08999 * 109.71243 * 46.46219 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5292 -0.5249 -1.3699 6 1 4.0450 0.1296 -0.6828 7 6 4.2333 -1.1808 -2.3572 8 7 5.5331 -1.0099 -2.4622 9 14 3.3411 -2.3124 -3.5460 10 1 2.8928 -1.5339 -4.7284 11 1 4.2599 -3.3935 -3.9845 12 1 2.1613 -2.9093 -2.8701 13 7 2.0197 -0.6924 1.1995 14 6 3.4626 -0.4806 1.3770 15 6 3.7728 1.0233 1.3513 16 6 2.8141 1.7073 2.2906 17 7 2.8579 2.9229 2.8192 18 7 1.8235 3.0806 3.5755 19 7 1.0955 2.0134 3.5664 20 1 0.2679 1.8835 4.0555 21 6 1.6855 1.1163 2.7615 22 6 1.2614 -0.2801 2.3938 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8191 -1.7856 -1.1699 27 1 1.5470 -0.3127 -2.1314 28 1 6.0285 -1.4717 -3.1567 29 1 4.0039 -0.9763 0.5711 30 1 3.7744 -0.8987 2.3341 31 1 3.6392 1.4105 0.3411 32 1 4.7977 1.1945 1.6805 33 1 1.4771 -0.9592 3.2188 34 1 0.1938 -0.2945 2.1746 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571050386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:47 Heat of formation + Delta-G solvation = 91.279336 kcal Electronic energy + Delta-G solvation = -17547.292658 eV Core-core repulsion = 14902.945277 eV Total energy + Delta-G solvation = -2644.347381 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.50076 -40.17126 -35.21828 -35.06405 -33.84362 -31.84036 -31.18402 -29.18373 -26.31316 -24.57527 -24.13275 -23.72059 -22.17930 -19.69809 -19.32837 -18.69307 -17.34210 -16.81178 -16.35058 -16.19302 -15.32205 -15.04800 -14.86412 -14.26834 -13.92925 -13.74187 -13.48164 -13.24253 -12.89365 -12.70187 -12.49665 -12.34809 -12.11338 -12.00509 -11.82291 -11.51763 -11.31701 -11.04948 -10.85457 -10.54605 -9.86851 -9.21746 -8.10657 -6.08639 0.52199 1.41921 1.42567 1.46246 1.55493 1.82791 2.48648 3.00219 3.24392 3.35916 3.73305 3.93790 4.10182 4.23965 4.29355 4.38968 4.56152 4.56689 4.66385 4.80180 4.91936 5.00911 5.04701 5.18724 5.26560 5.27644 5.43387 5.56703 5.61851 5.81067 6.02161 6.24818 6.34566 6.53424 6.96839 7.38150 7.51195 9.02379 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.008049 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.485849 B = 3477.889217 C = 3883.954182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.087 3.913 3 H 0.023 0.977 4 C -0.008 4.008 5 C -0.520 4.520 6 H 0.080 0.920 7 C 0.010 3.990 8 N -0.949 5.949 9 Si 0.931 3.069 10 H -0.280 1.280 11 H -0.295 1.295 12 H -0.246 1.246 13 N -0.506 5.506 14 C 0.053 3.947 15 C -0.064 4.064 16 C -0.034 4.034 17 N -0.297 5.297 18 N -0.117 5.117 19 N -0.354 5.354 20 H 0.467 0.533 21 C -0.027 4.027 22 C 0.116 3.884 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 -0.797 10.976 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 H 0.041 0.959 4 C -0.045 4.045 5 C -0.558 4.558 6 H 0.097 0.903 7 C -0.187 4.187 8 N -0.591 5.591 9 Si 0.757 3.243 10 H -0.206 1.206 11 H -0.221 1.221 12 H -0.169 1.169 13 N -0.227 5.227 14 C -0.076 4.076 15 C -0.104 4.104 16 C -0.175 4.175 17 N -0.162 5.162 18 N -0.096 5.096 19 N -0.077 5.077 20 H 0.317 0.683 21 C -0.166 4.166 22 C -0.014 4.014 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.912 0.124 11.314 17.168 hybrid contribution 0.022 -0.321 -0.936 0.989 sum -12.890 -0.196 10.379 16.550 Atomic orbital electron populations 1.22029 0.93402 1.03017 1.01941 1.21569 0.95096 0.94986 0.90411 0.95886 1.19616 0.94828 0.96780 0.93316 1.21962 0.93047 1.26322 1.14421 0.90274 1.25769 0.95206 0.98460 0.99228 1.70044 1.08314 1.45485 1.35258 0.85948 0.79454 0.79194 0.79706 1.20594 1.22111 1.16915 1.62415 1.03427 1.55283 1.01622 1.22615 0.89171 0.92251 1.03534 1.20631 0.96689 0.96957 0.96165 1.21947 0.99205 0.92357 1.04038 1.74680 1.14827 1.17828 1.08906 1.78454 1.01418 1.09442 1.20304 1.44567 1.21542 1.09308 1.32262 0.68320 1.23387 0.96406 0.98580 0.98273 1.21551 1.01209 0.84548 0.94116 0.92367 0.90753 0.91287 0.95275 0.96879 0.93146 0.87656 0.90402 0.91026 0.90798 0.86119 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 8.39 71.98 0.60 -3.17 16 2 C 0.09 3.05 1.88 44.92 0.08 3.13 16 3 H 0.02 0.92 5.32 -2.39 -0.01 0.91 16 4 C -0.01 -0.33 3.72 29.85 0.11 -0.22 16 5 C -0.52 -26.97 7.22 25.60 0.18 -26.79 16 6 H 0.08 4.29 3.66 -2.91 -0.01 4.28 16 7 C 0.01 0.54 5.47 84.65 0.46 1.00 16 8 N -0.95 -57.03 13.96 21.45 0.30 -56.73 16 9 Si 0.93 43.05 27.58 68.60 1.89 44.94 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.25 -10.50 6.38 99.48 0.63 -9.87 16 13 N -0.51 -15.85 4.80 -873.43 -4.20 -20.05 16 14 C 0.05 1.89 5.25 86.49 0.45 2.35 16 15 C -0.06 -2.44 5.03 30.03 0.15 -2.29 16 16 C -0.03 -1.20 6.58 41.86 0.28 -0.93 16 17 N -0.30 -11.13 12.39 -48.96 -0.61 -11.74 16 18 N -0.12 -3.65 13.40 37.02 0.50 -3.16 16 19 N -0.35 -7.80 6.96 -48.27 -0.34 -8.13 16 20 H 0.47 5.27 8.96 -219.63 -1.97 3.30 16 21 C -0.03 -0.71 6.87 41.58 0.29 -0.42 16 22 C 0.12 2.51 5.70 85.41 0.49 3.00 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 1.41 6.05 -2.38 -0.01 1.39 16 26 H 0.03 1.26 6.80 -2.39 -0.02 1.25 16 27 H 0.01 0.56 7.82 -2.39 -0.02 0.54 16 28 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 29 H 0.11 4.70 4.99 -2.39 -0.01 4.69 16 30 H 0.08 2.43 8.07 -2.38 -0.02 2.41 16 31 H 0.07 3.19 5.14 -2.38 -0.01 3.18 16 32 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.13 2.04 5.37 -2.39 -0.01 2.02 16 Total: -1.00 -67.79 258.89 -0.25 -68.03 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -0.90 Total: 11.17 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 3.10 Total: -24.34 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -4.34 Total: -99.81 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.89 Total: 44.94 kcal Total: -67.79 -0.25 -68.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571050386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.313 kcal (2) G-P(sol) polarization free energy of solvation -67.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds