Wall clock time and date at job start Sun Mar 29 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46889 * 2 1 4 4 C 1.52996 * 109.47086 * 119.99560 * 2 1 3 5 5 C 1.50705 * 109.47201 * 63.02852 * 4 2 1 6 6 H 1.07999 * 119.99556 * 5.09062 * 5 4 2 7 7 C 1.37876 * 119.99932 * 185.09632 * 5 4 2 8 8 N 1.31513 * 120.00001 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99779 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47067 * 60.00037 * 9 7 5 11 11 H 1.48503 * 109.47055 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47224 * 299.99825 * 9 7 5 13 13 N 1.46893 * 109.47099 * 239.99634 * 2 1 3 14 14 C 1.46942 * 111.00064 * 59.12796 * 13 2 1 15 15 C 1.53575 * 109.67764 * 53.01847 * 14 13 2 16 16 C 1.50544 * 107.84772 * 49.08678 * 15 14 13 17 17 N 1.32624 * 130.07834 * 164.04366 * 16 15 14 18 18 N 1.29102 * 108.59603 * 180.30868 * 17 16 15 19 19 N 1.29182 * 110.27753 * 359.97438 * 18 17 16 20 20 H 0.96998 * 126.01352 * 179.97438 * 19 18 17 21 21 C 1.34196 * 107.97776 * 359.91009 * 19 18 17 22 22 C 1.47363 * 110.99972 * 183.76077 * 13 2 1 23 23 H 1.09005 * 109.47574 * 299.99927 * 1 2 3 24 24 H 1.08999 * 109.47574 * 60.00556 * 1 2 3 25 25 H 1.08999 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47285 * 183.02186 * 4 2 1 27 27 H 1.08995 * 109.47484 * 303.02299 * 4 2 1 28 28 H 0.97004 * 119.99612 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.43269 * 173.06656 * 14 13 2 30 30 H 1.09000 * 109.43302 * 292.96841 * 14 13 2 31 31 H 1.08999 * 109.80037 * 168.62356 * 15 14 13 32 32 H 1.09007 * 109.79470 * 289.48257 * 15 14 13 33 33 H 1.09000 * 109.71359 * 46.45705 * 22 13 2 34 34 H 1.09003 * 109.71156 * 167.08567 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5998 -2.1620 1.2124 6 1 1.0863 -2.5477 0.3441 7 6 1.8527 -2.9878 2.2872 8 7 2.4783 -2.5181 3.3444 9 14 1.3065 -4.7735 2.2418 10 1 1.9591 -5.4619 1.0992 11 1 1.6951 -5.4424 3.5095 12 1 -0.1684 -4.8362 2.0805 13 7 2.0196 -0.6925 -1.1993 14 6 1.5315 -0.0385 -2.4213 15 6 1.8730 1.4582 -2.3784 16 6 3.3276 1.5893 -2.0135 17 7 4.1456 2.6274 -2.1244 18 7 5.3114 2.2810 -1.6912 19 7 5.2951 1.0510 -1.2967 20 1 6.0470 0.5595 -0.9307 21 6 4.0547 0.5733 -1.4810 22 6 3.4899 -0.7908 -1.1891 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1286 -0.6745 1.2768 27 1 1.6331 -0.2395 2.1384 28 1 2.6565 -3.0992 4.1004 29 1 2.0059 -0.4938 -3.2906 30 1 0.4508 -0.1619 -2.4917 31 1 1.6972 1.9052 -3.3569 32 1 1.2579 1.9559 -1.6285 33 1 3.8291 -1.1273 -0.2094 34 1 3.8166 -1.4955 -1.9539 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571050396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:49 Heat of formation + Delta-G solvation = 98.888702 kcal Electronic energy + Delta-G solvation = -17403.422692 eV Core-core repulsion = 14759.405278 eV Total energy + Delta-G solvation = -2644.017414 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.25516 -38.70684 -34.02622 -33.41705 -31.85682 -30.35997 -29.73912 -26.88889 -24.47136 -24.15756 -22.67324 -22.59823 -20.61458 -18.27541 -17.90854 -16.33307 -16.18237 -15.18455 -14.96943 -14.36012 -14.15799 -13.79627 -13.40889 -12.84896 -12.39481 -12.13211 -11.83902 -11.55871 -11.32773 -11.08490 -10.99940 -10.85580 -10.75915 -10.69718 -10.42119 -10.12766 -9.96982 -9.25610 -9.09342 -8.62215 -8.33725 -7.79189 -5.97282 -3.96141 1.75071 2.69319 2.91774 3.34778 3.39784 3.42493 4.29421 4.48699 4.52630 4.92213 5.05028 5.33492 5.36803 5.40885 5.62466 5.70228 5.86921 5.94774 6.01898 6.09718 6.12433 6.22304 6.31247 6.42341 6.55568 6.83815 7.01149 7.08792 7.38906 7.50231 7.67773 7.82511 8.03961 8.48365 8.62236 9.12444 9.66959 11.14374 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.007713 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.059967 B = 3629.551398 C = 3988.709758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.081 3.919 3 H 0.021 0.979 4 C 0.025 3.975 5 C -0.492 4.492 6 H 0.069 0.931 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.292 1.292 12 H -0.278 1.278 13 N -0.493 5.493 14 C 0.049 3.951 15 C -0.069 4.069 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.107 5.107 19 N -0.379 5.379 20 H 0.448 0.552 21 C -0.029 4.029 22 C 0.122 3.878 23 H 0.050 0.950 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.009 0.991 27 H 0.024 0.976 28 H 0.258 0.742 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 3.560 -9.841 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.026 4.026 3 H 0.039 0.961 4 C -0.012 4.012 5 C -0.530 4.530 6 H 0.087 0.913 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.218 1.218 12 H -0.204 1.204 13 N -0.214 5.214 14 C -0.080 4.080 15 C -0.109 4.109 16 C -0.167 4.167 17 N -0.127 5.127 18 N -0.086 5.086 19 N -0.097 5.097 20 H 0.293 0.707 21 C -0.168 4.168 22 C -0.009 4.009 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.513 4.388 -9.878 10.914 hybrid contribution 0.139 -1.326 0.556 1.445 sum 1.652 3.062 -9.322 9.950 Atomic orbital electron populations 1.21766 0.94937 1.02921 0.99398 1.21872 0.95383 0.94125 0.91246 0.96083 1.19268 0.95471 0.95936 0.90489 1.21169 1.36147 0.94321 1.01401 0.91307 1.25049 0.95748 0.98409 0.95719 1.69959 1.42438 1.35848 1.06171 0.86694 0.79093 0.85463 0.76901 1.20380 1.21768 1.20402 1.62398 1.05963 1.51156 1.01918 1.22405 1.01757 0.90091 0.93757 1.20685 0.87890 0.99978 1.02395 1.21612 0.98630 0.90301 1.06124 1.74643 0.96468 1.25188 1.16399 1.78526 1.17461 0.95228 1.17343 1.44636 1.11246 1.10649 1.43197 0.70715 1.23477 0.85953 1.02473 1.04879 1.21133 0.88122 0.86994 1.04652 0.93074 0.94608 0.90747 0.97307 0.95771 0.93214 0.90970 0.89237 0.90015 0.89744 0.86503 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.62 37.15 0.32 -2.00 16 2 C 0.08 1.54 1.64 -67.72 -0.11 1.43 16 3 H 0.02 0.41 5.70 -51.93 -0.30 0.12 16 4 C 0.03 0.60 4.22 -27.88 -0.12 0.48 16 5 C -0.49 -12.59 7.88 -34.44 -0.27 -12.86 16 6 H 0.07 1.74 6.86 -52.49 -0.36 1.38 16 7 C 0.05 1.36 5.46 -17.82 -0.10 1.27 16 8 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.49 -8.33 4.12 -227.41 -0.94 -9.27 16 14 C 0.05 0.67 5.34 -3.50 -0.02 0.65 16 15 C -0.07 -0.96 5.66 -27.66 -0.16 -1.11 16 16 C -0.03 -0.43 6.48 -83.19 -0.54 -0.97 16 17 N -0.26 -4.70 12.39 33.15 0.41 -4.29 16 18 N -0.11 -1.80 13.40 60.35 0.81 -0.99 16 19 N -0.38 -5.41 6.96 33.39 0.23 -5.18 16 20 H 0.45 4.66 8.96 -190.02 -1.70 2.96 16 21 C -0.03 -0.45 6.78 -82.52 -0.56 -1.01 16 22 C 0.12 1.93 5.94 -4.82 -0.03 1.90 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.03 0.52 6.15 -51.93 -0.32 0.20 16 25 H 0.07 1.41 6.92 -51.93 -0.36 1.05 16 26 H 0.01 0.22 6.24 -51.93 -0.32 -0.10 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.09 1.13 6.69 -51.93 -0.35 0.78 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.21 6.61 -51.92 -0.34 0.87 16 33 H 0.12 2.11 5.64 -51.93 -0.29 1.82 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 267.76 15.07 4.04 4.04 Total: -1.00 -30.54 267.76 -6.90 -37.44 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.59 Total: -0.19 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.58 Total: -12.23 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 1.25 Total: -44.95 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.54 -6.90 -37.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571050396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.334 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds