Wall clock time and date at job start Sun Mar 29 2020 21:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46889 * 2 1 4 4 C 1.52996 * 109.47086 * 119.99560 * 2 1 3 5 5 C 1.50705 * 109.47201 * 63.02852 * 4 2 1 6 6 H 1.07999 * 119.99556 * 5.09062 * 5 4 2 7 7 C 1.37876 * 119.99932 * 185.09632 * 5 4 2 8 8 N 1.31513 * 120.00001 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99779 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47067 * 60.00037 * 9 7 5 11 11 H 1.48503 * 109.47055 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47224 * 299.99825 * 9 7 5 13 13 N 1.46893 * 109.47099 * 239.99634 * 2 1 3 14 14 C 1.46942 * 111.00064 * 59.12796 * 13 2 1 15 15 C 1.53575 * 109.67764 * 53.01847 * 14 13 2 16 16 C 1.50544 * 107.84772 * 49.08678 * 15 14 13 17 17 N 1.32624 * 130.07834 * 164.04366 * 16 15 14 18 18 N 1.29102 * 108.59603 * 180.30868 * 17 16 15 19 19 N 1.29182 * 110.27753 * 359.97438 * 18 17 16 20 20 H 0.96998 * 126.01352 * 179.97438 * 19 18 17 21 21 C 1.34196 * 107.97776 * 359.91009 * 19 18 17 22 22 C 1.47363 * 110.99972 * 183.76077 * 13 2 1 23 23 H 1.09005 * 109.47574 * 299.99927 * 1 2 3 24 24 H 1.08999 * 109.47574 * 60.00556 * 1 2 3 25 25 H 1.08999 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47285 * 183.02186 * 4 2 1 27 27 H 1.08995 * 109.47484 * 303.02299 * 4 2 1 28 28 H 0.97004 * 119.99612 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.43269 * 173.06656 * 14 13 2 30 30 H 1.09000 * 109.43302 * 292.96841 * 14 13 2 31 31 H 1.08999 * 109.80037 * 168.62356 * 15 14 13 32 32 H 1.09007 * 109.79470 * 289.48257 * 15 14 13 33 33 H 1.09000 * 109.71359 * 46.45705 * 22 13 2 34 34 H 1.09003 * 109.71156 * 167.08567 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5998 -2.1620 1.2124 6 1 1.0863 -2.5477 0.3441 7 6 1.8527 -2.9878 2.2872 8 7 2.4783 -2.5181 3.3444 9 14 1.3065 -4.7735 2.2418 10 1 1.9591 -5.4619 1.0992 11 1 1.6951 -5.4424 3.5095 12 1 -0.1684 -4.8362 2.0805 13 7 2.0196 -0.6925 -1.1993 14 6 1.5315 -0.0385 -2.4213 15 6 1.8730 1.4582 -2.3784 16 6 3.3276 1.5893 -2.0135 17 7 4.1456 2.6274 -2.1244 18 7 5.3114 2.2810 -1.6912 19 7 5.2951 1.0510 -1.2967 20 1 6.0470 0.5595 -0.9307 21 6 4.0547 0.5733 -1.4810 22 6 3.4899 -0.7908 -1.1891 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1286 -0.6745 1.2768 27 1 1.6331 -0.2395 2.1384 28 1 2.6565 -3.0992 4.1004 29 1 2.0059 -0.4938 -3.2906 30 1 0.4508 -0.1619 -2.4917 31 1 1.6972 1.9052 -3.3569 32 1 1.2579 1.9559 -1.6285 33 1 3.8291 -1.1273 -0.2094 34 1 3.8166 -1.4955 -1.9539 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571050396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:48 Heat of formation + Delta-G solvation = 76.891762 kcal Electronic energy + Delta-G solvation = -17404.376550 eV Core-core repulsion = 14759.405278 eV Total energy + Delta-G solvation = -2644.971273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.50102 -40.04471 -35.60105 -34.83795 -33.58103 -31.58894 -31.11810 -28.63027 -25.83699 -25.71827 -24.06242 -23.92189 -22.01419 -19.70630 -19.16057 -18.21340 -17.45007 -16.67270 -16.42130 -16.05408 -15.58969 -15.03049 -14.75543 -14.20580 -13.92172 -13.66804 -13.23367 -13.08626 -12.76966 -12.68460 -12.60572 -12.35349 -12.22018 -12.18048 -12.01380 -11.59198 -11.37265 -11.00836 -10.94438 -10.41406 -9.87283 -9.14755 -8.04367 -6.08311 0.50940 1.42310 1.49314 1.50107 1.57316 1.80400 2.52636 3.01564 3.31241 3.33516 3.72084 3.88789 4.16002 4.25713 4.35883 4.41600 4.53055 4.63991 4.72009 4.87170 4.92972 4.95233 5.04109 5.17593 5.27100 5.34259 5.51580 5.57665 5.72392 5.92863 5.94015 6.23144 6.33976 6.52845 7.07999 7.35816 7.58561 9.07633 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.007713 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.059967 B = 3629.551398 C = 3988.709758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.095 3.905 3 H 0.017 0.983 4 C 0.030 3.970 5 C -0.483 4.483 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.944 5.944 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.297 1.297 12 H -0.271 1.271 13 N -0.505 5.505 14 C 0.052 3.948 15 C -0.066 4.066 16 C -0.035 4.035 17 N -0.288 5.288 18 N -0.121 5.121 19 N -0.364 5.364 20 H 0.462 0.538 21 C -0.032 4.032 22 C 0.127 3.873 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.059 0.941 26 H -0.009 1.009 27 H -0.013 1.013 28 H 0.256 0.744 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 2.860 -11.818 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.013 4.013 3 H 0.035 0.965 4 C -0.007 4.007 5 C -0.522 4.522 6 H 0.093 0.907 7 C -0.202 4.202 8 N -0.587 5.587 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.224 1.224 12 H -0.197 1.197 13 N -0.226 5.226 14 C -0.076 4.076 15 C -0.106 4.106 16 C -0.176 4.176 17 N -0.153 5.153 18 N -0.100 5.100 19 N -0.085 5.085 20 H 0.310 0.690 21 C -0.171 4.171 22 C -0.003 4.003 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.009 0.991 27 H 0.006 0.994 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.660 3.691 -11.878 12.456 hybrid contribution 0.448 -1.075 1.163 1.646 sum 1.108 2.616 -10.715 11.085 Atomic orbital electron populations 1.21711 0.93564 1.02371 1.00892 1.21543 0.96321 0.93157 0.90287 0.96541 1.19139 0.94235 0.95631 0.91675 1.21444 1.34696 0.94971 1.01043 0.90658 1.25854 0.96179 1.02558 0.95598 1.70108 1.44371 1.37225 1.06983 0.85678 0.78899 0.80678 0.76778 1.19241 1.22368 1.19665 1.62340 1.06458 1.51517 1.02274 1.22524 1.02874 0.89660 0.92517 1.20764 0.86155 1.00254 1.03443 1.22098 0.99741 0.89910 1.05838 1.74624 0.97035 1.26150 1.17514 1.78466 1.17488 0.96062 1.17952 1.44664 1.11613 1.10073 1.42140 0.68951 1.23472 0.86304 1.02364 1.04983 1.21054 0.87811 0.87519 1.03960 0.93821 0.90967 0.92188 0.99123 0.99443 0.93581 0.89027 0.87498 0.87774 0.90141 0.89263 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.62 71.98 0.62 -3.62 16 2 C 0.09 3.51 1.64 44.91 0.07 3.58 16 3 H 0.02 0.64 5.70 -2.39 -0.01 0.62 16 4 C 0.03 1.46 4.22 29.85 0.13 1.59 16 5 C -0.48 -24.66 7.88 25.60 0.20 -24.46 16 6 H 0.08 3.71 6.86 -2.91 -0.02 3.69 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.13 16 8 N -0.94 -55.43 13.29 21.45 0.28 -55.14 16 9 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.50 -15.93 4.12 -873.39 -3.60 -19.53 16 14 C 0.05 1.24 5.34 86.49 0.46 1.70 16 15 C -0.07 -1.63 5.66 29.99 0.17 -1.46 16 16 C -0.03 -1.08 6.48 41.83 0.27 -0.81 16 17 N -0.29 -10.05 12.39 -49.05 -0.61 -10.66 16 18 N -0.12 -3.98 13.40 37.02 0.50 -3.49 16 19 N -0.36 -10.06 6.96 -48.27 -0.34 -10.39 16 20 H 0.46 9.26 8.96 -219.64 -1.97 7.29 16 21 C -0.03 -0.95 6.78 41.57 0.28 -0.66 16 22 C 0.13 3.85 5.94 85.41 0.51 4.35 16 23 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.07 1.85 6.15 -2.39 -0.01 1.84 16 25 H 0.06 2.16 6.92 -2.39 -0.02 2.15 16 26 H -0.01 -0.48 6.24 -2.39 -0.01 -0.50 16 27 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.09 1.87 8.07 -2.39 -0.02 1.85 16 30 H 0.11 2.20 6.69 -2.39 -0.02 2.18 16 31 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.09 6.61 -2.38 -0.02 2.07 16 33 H 0.09 3.23 5.64 -2.39 -0.01 3.22 16 34 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -65.54 267.76 0.60 -64.93 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -0.84 Total: 9.25 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 3.18 Total: -19.67 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.76 Total: -99.21 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.54 0.60 -64.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571050396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.826 kcal (2) G-P(sol) polarization free energy of solvation -65.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds