Wall clock time and date at job start Sun Mar 29 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46995 * 2 1 4 4 C 1.52997 * 109.47056 * 120.00073 * 2 1 3 5 5 C 1.50694 * 109.47126 * 296.39554 * 4 2 1 6 6 H 1.08001 * 120.00260 * 358.80191 * 5 4 2 7 7 C 1.37877 * 120.00231 * 178.80262 * 5 4 2 8 8 N 1.31517 * 120.00279 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99867 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46962 * 90.00055 * 9 7 5 11 11 H 1.48501 * 109.47130 * 209.99989 * 9 7 5 12 12 H 1.48502 * 109.47083 * 329.99966 * 9 7 5 13 13 N 1.46901 * 109.47018 * 240.00023 * 2 1 3 14 14 C 1.46853 * 110.99891 * 179.00978 * 13 2 1 15 15 C 1.53037 * 109.51996 * 174.15626 * 14 13 2 16 16 C 1.53118 * 109.27697 * 59.18594 * 15 14 13 17 17 C 1.52994 * 109.52432 * 182.43581 * 16 15 14 18 18 C 1.47206 * 109.52317 * 62.24355 * 16 15 14 19 19 N 5.13805 * 122.57976 * 289.59157 * 2 1 3 20 20 C 1.53118 * 109.16149 * 302.34188 * 16 15 14 21 21 C 1.46844 * 111.00308 * 54.80313 * 13 2 1 22 22 H 1.09001 * 109.47182 * 300.00231 * 1 2 3 23 23 H 1.09002 * 109.46981 * 59.99979 * 1 2 3 24 24 H 1.09004 * 109.46995 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47070 * 176.40167 * 4 2 1 26 26 H 1.09002 * 109.47487 * 56.39898 * 4 2 1 27 27 H 0.96997 * 119.99793 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.46452 * 294.17802 * 14 13 2 29 29 H 1.08999 * 109.45813 * 54.14830 * 14 13 2 30 30 H 1.08997 * 109.50800 * 299.23911 * 15 14 13 31 31 H 1.09003 * 109.53390 * 179.13879 * 15 14 13 32 32 H 1.09003 * 109.47804 * 179.68187 * 17 16 15 33 33 H 1.09002 * 109.46952 * 299.68091 * 17 16 15 34 34 H 1.09001 * 109.47520 * 59.68374 * 17 16 15 35 35 H 1.09007 * 109.50103 * 297.71708 * 20 16 15 36 36 H 1.09000 * 109.50880 * 177.60041 * 20 16 15 37 37 H 1.09005 * 109.45934 * 305.85461 * 21 13 2 38 38 H 1.09001 * 109.46215 * 65.81970 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6119 0.0388 2.4780 6 1 1.0505 0.9559 2.3774 7 6 1.9369 -0.4366 3.7308 8 7 1.5629 0.2265 4.8032 9 14 2.9086 -2.0225 3.9048 10 1 4.3612 -1.7141 3.9173 11 1 2.5344 -2.6954 5.1746 12 1 2.6025 -2.9186 2.7608 13 7 2.0196 -0.6925 -1.1995 14 6 3.4874 -0.6916 -1.2453 15 6 3.9627 -1.5429 -2.4249 16 6 3.3926 -0.9687 -3.7248 17 6 3.8144 -1.8507 -4.9016 18 6 3.9029 0.3975 -3.9246 19 7 4.2967 1.4518 -4.0789 20 6 1.8646 -0.9357 -3.6320 21 6 1.4501 -0.1021 -2.4174 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1281 -0.7775 1.2175 26 1 1.6249 -1.7286 1.2821 27 1 1.7919 -0.1078 5.6845 28 1 3.8464 0.3303 -1.3669 29 1 3.8800 -1.1062 -0.3168 30 1 3.6158 -2.5682 -2.2969 31 1 5.0518 -1.5300 -2.4682 32 1 3.4035 -1.4445 -5.8259 33 1 4.9022 -1.8736 -4.9669 34 1 3.4381 -2.8625 -4.7507 35 1 1.4846 -1.9515 -3.5230 36 1 1.4545 -0.4884 -4.5375 37 1 0.3629 -0.0885 -2.3402 38 1 1.8186 0.9171 -2.5335 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573566823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:29 Heat of formation + Delta-G solvation = 15.700495 kcal Electronic energy + Delta-G solvation = -17229.433713 eV Core-core repulsion = 14685.349331 eV Total energy + Delta-G solvation = -2544.084382 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86854 -36.82517 -35.05250 -32.89553 -31.18697 -31.03713 -27.87698 -27.04692 -23.91065 -23.17643 -22.21513 -21.03220 -19.16903 -17.19734 -16.45240 -15.40672 -14.95654 -14.63588 -14.36070 -14.23956 -13.93170 -13.61452 -13.19945 -12.82071 -12.69688 -12.30523 -12.24389 -12.12338 -12.09916 -11.63637 -11.45566 -11.22656 -11.11448 -10.99989 -10.79294 -10.49982 -10.24661 -9.87802 -9.77747 -9.52623 -9.12943 -8.51692 -7.85285 -6.03422 -4.01001 2.75127 2.76637 3.31432 3.39368 3.43839 3.77196 4.29005 4.46291 4.55146 4.63716 4.73876 5.19255 5.30234 5.34875 5.37759 5.48091 5.51029 5.60732 5.71244 5.75866 5.83415 5.88449 5.94288 6.06096 6.08742 6.22397 6.24778 6.26893 6.64022 6.77173 7.02980 7.12376 7.32074 7.54401 7.59387 7.64852 7.86613 8.54328 9.00880 9.58945 11.09816 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034263 B = 0.006346 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.012338 B = 4411.050441 C = 4672.106682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.094 3.906 3 H 0.031 0.969 4 C -0.004 4.004 5 C -0.517 4.517 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.532 5.532 14 C 0.045 3.955 15 C -0.103 4.103 16 C 0.031 3.969 17 C -0.138 4.138 18 C 0.220 3.780 19 N -0.442 5.442 20 C -0.102 4.102 21 C 0.044 3.956 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.011 0.989 26 H 0.026 0.974 27 H 0.262 0.738 28 H 0.026 0.974 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -6.826 -17.786 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.013 4.013 3 H 0.049 0.951 4 C -0.041 4.041 5 C -0.555 4.555 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.258 5.258 14 C -0.083 4.083 15 C -0.142 4.142 16 C 0.028 3.972 17 C -0.197 4.197 18 C -0.098 4.098 19 N -0.117 5.117 20 C -0.140 4.140 21 C -0.084 4.084 22 H 0.090 0.910 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.448 -5.697 -17.798 18.848 hybrid contribution 0.707 -0.179 0.341 0.805 sum 3.155 -5.876 -17.457 18.688 Atomic orbital electron populations 1.21814 0.94800 1.01762 1.00717 1.21603 0.95310 0.95246 0.89116 0.95068 1.19653 0.95574 0.96747 0.92137 1.21095 1.35649 1.09739 0.89039 0.90967 1.24991 0.95567 0.96965 0.95844 1.69912 1.46981 1.39492 0.97935 0.86816 0.80519 0.84519 0.77716 1.20462 1.21466 1.18651 1.62092 1.06322 1.55248 1.02107 1.22188 0.88961 0.98003 0.99110 1.21751 1.00119 1.01020 0.91288 1.18508 0.96863 0.83746 0.98100 1.21852 1.02065 0.99654 0.96084 1.29176 0.93159 0.94792 0.92710 1.81188 1.09279 1.12090 1.09133 1.21727 0.91238 1.02895 0.98182 1.22201 1.00956 0.95223 0.90044 0.90955 0.94633 0.92534 0.97056 0.95534 0.92775 0.95532 0.89029 0.88814 0.90986 0.91897 0.91848 0.90239 0.88844 0.91113 0.89531 0.95735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.60 37.16 0.32 -2.12 16 2 C 0.09 1.86 2.11 -67.71 -0.14 1.72 16 3 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.00 -0.08 3.44 -27.89 -0.10 -0.18 16 5 C -0.52 -14.41 8.93 -34.44 -0.31 -14.71 16 6 H 0.07 2.17 7.25 -52.49 -0.38 1.79 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 9 Si 0.88 21.49 27.49 -169.99 -4.67 16.82 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.14 6.51 56.52 0.37 -5.78 16 13 N -0.53 -8.61 4.53 -226.69 -1.03 -9.64 16 14 C 0.05 0.69 5.03 -3.83 -0.02 0.67 16 15 C -0.10 -1.13 4.86 -26.65 -0.13 -1.26 16 16 C 0.03 0.32 0.72 -157.17 -0.11 0.20 16 17 C -0.14 -0.96 8.44 37.15 0.31 -0.65 16 18 C 0.22 2.90 11.60 -20.76 -0.24 2.66 16 19 N -0.44 -7.04 18.54 42.15 0.78 -6.26 16 20 C -0.10 -1.01 4.86 -26.65 -0.13 -1.14 16 21 C 0.04 0.60 4.90 -3.84 -0.02 0.58 16 22 H 0.07 1.47 6.88 -51.93 -0.36 1.12 16 23 H 0.03 0.55 6.21 -51.93 -0.32 0.23 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.01 0.26 5.61 -51.93 -0.29 -0.03 16 26 H 0.03 0.63 7.12 -51.93 -0.37 0.26 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.03 0.44 7.31 -51.93 -0.38 0.06 16 29 H 0.09 1.52 5.96 -51.93 -0.31 1.21 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 38 H 0.02 0.37 7.31 -51.93 -0.38 -0.01 16 LS Contribution 295.33 15.07 4.45 4.45 Total: -1.00 -31.45 295.33 -6.43 -37.88 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -6.07 Total: -3.91 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.66 Total: -12.39 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.53 Total: -42.85 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.45 -6.43 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573566823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.578 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds