Wall clock time and date at job start Sun Mar 29 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46995 * 2 1 4 4 C 1.52997 * 109.47056 * 120.00073 * 2 1 3 5 5 C 1.50694 * 109.47126 * 296.39554 * 4 2 1 6 6 H 1.08001 * 120.00260 * 358.80191 * 5 4 2 7 7 C 1.37877 * 120.00231 * 178.80262 * 5 4 2 8 8 N 1.31517 * 120.00279 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99867 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46962 * 90.00055 * 9 7 5 11 11 H 1.48501 * 109.47130 * 209.99989 * 9 7 5 12 12 H 1.48502 * 109.47083 * 329.99966 * 9 7 5 13 13 N 1.46901 * 109.47018 * 240.00023 * 2 1 3 14 14 C 1.46853 * 110.99891 * 179.00978 * 13 2 1 15 15 C 1.53037 * 109.51996 * 174.15626 * 14 13 2 16 16 C 1.53118 * 109.27697 * 59.18594 * 15 14 13 17 17 C 1.52994 * 109.52432 * 182.43581 * 16 15 14 18 18 C 1.47206 * 109.52317 * 62.24355 * 16 15 14 19 19 N 5.13805 * 122.57976 * 289.59157 * 2 1 3 20 20 C 1.53118 * 109.16149 * 302.34188 * 16 15 14 21 21 C 1.46844 * 111.00308 * 54.80313 * 13 2 1 22 22 H 1.09001 * 109.47182 * 300.00231 * 1 2 3 23 23 H 1.09002 * 109.46981 * 59.99979 * 1 2 3 24 24 H 1.09004 * 109.46995 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47070 * 176.40167 * 4 2 1 26 26 H 1.09002 * 109.47487 * 56.39898 * 4 2 1 27 27 H 0.96997 * 119.99793 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.46452 * 294.17802 * 14 13 2 29 29 H 1.08999 * 109.45813 * 54.14830 * 14 13 2 30 30 H 1.08997 * 109.50800 * 299.23911 * 15 14 13 31 31 H 1.09003 * 109.53390 * 179.13879 * 15 14 13 32 32 H 1.09003 * 109.47804 * 179.68187 * 17 16 15 33 33 H 1.09002 * 109.46952 * 299.68091 * 17 16 15 34 34 H 1.09001 * 109.47520 * 59.68374 * 17 16 15 35 35 H 1.09007 * 109.50103 * 297.71708 * 20 16 15 36 36 H 1.09000 * 109.50880 * 177.60041 * 20 16 15 37 37 H 1.09005 * 109.45934 * 305.85461 * 21 13 2 38 38 H 1.09001 * 109.46215 * 65.81970 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6119 0.0388 2.4780 6 1 1.0505 0.9559 2.3774 7 6 1.9369 -0.4366 3.7308 8 7 1.5629 0.2265 4.8032 9 14 2.9086 -2.0225 3.9048 10 1 4.3612 -1.7141 3.9173 11 1 2.5344 -2.6954 5.1746 12 1 2.6025 -2.9186 2.7608 13 7 2.0196 -0.6925 -1.1995 14 6 3.4874 -0.6916 -1.2453 15 6 3.9627 -1.5429 -2.4249 16 6 3.3926 -0.9687 -3.7248 17 6 3.8144 -1.8507 -4.9016 18 6 3.9029 0.3975 -3.9246 19 7 4.2967 1.4518 -4.0789 20 6 1.8646 -0.9357 -3.6320 21 6 1.4501 -0.1021 -2.4174 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1281 -0.7775 1.2175 26 1 1.6249 -1.7286 1.2821 27 1 1.7919 -0.1078 5.6845 28 1 3.8464 0.3303 -1.3669 29 1 3.8800 -1.1062 -0.3168 30 1 3.6158 -2.5682 -2.2969 31 1 5.0518 -1.5300 -2.4682 32 1 3.4035 -1.4445 -5.8259 33 1 4.9022 -1.8736 -4.9669 34 1 3.4381 -2.8625 -4.7507 35 1 1.4846 -1.9515 -3.5230 36 1 1.4545 -0.4884 -4.5375 37 1 0.3629 -0.0885 -2.3402 38 1 1.8186 0.9171 -2.5335 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573566823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:29 Heat of formation + Delta-G solvation = -5.337885 kcal Electronic energy + Delta-G solvation = -17230.346005 eV Core-core repulsion = 14685.349331 eV Total energy + Delta-G solvation = -2544.996675 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.92968 -38.10869 -36.26204 -34.79096 -32.71811 -32.11768 -29.46794 -28.15506 -25.40562 -24.17904 -23.53262 -22.21087 -20.78171 -19.15384 -17.61961 -16.63719 -16.40243 -15.95470 -15.65725 -15.39173 -15.30285 -14.81965 -14.60813 -14.35667 -13.82447 -13.63671 -13.49645 -13.42393 -12.94660 -12.79018 -12.77568 -12.50313 -12.40625 -12.30330 -12.09704 -11.86269 -11.72852 -11.52738 -11.38080 -11.14141 -10.94531 -10.69235 -9.23745 -8.26531 -6.29761 1.37570 1.39816 1.52566 1.73489 1.77135 2.38794 2.84823 3.04435 3.08943 3.72297 3.78264 3.92911 4.15298 4.25255 4.32384 4.45752 4.51415 4.57019 4.64605 4.78177 4.84401 4.93173 4.96462 5.06035 5.09287 5.12618 5.18719 5.24067 5.26575 5.32666 5.41230 5.42040 5.55814 5.68789 6.14580 6.28630 6.36225 6.55595 6.77452 7.33993 8.90136 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034263 B = 0.006346 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.012338 B = 4411.050441 C = 4672.106682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.099 3.901 3 H 0.001 0.999 4 C 0.004 3.996 5 C -0.523 4.523 6 H 0.031 0.969 7 C 0.004 3.996 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.239 1.239 13 N -0.523 5.523 14 C 0.040 3.960 15 C -0.096 4.096 16 C 0.033 3.967 17 C -0.133 4.133 18 C 0.238 3.762 19 N -0.501 5.501 20 C -0.095 4.095 21 C 0.040 3.960 22 H 0.039 0.961 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.015 0.985 26 H 0.031 0.969 27 H 0.265 0.735 28 H 0.001 0.999 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 -10.106 -20.290 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.009 4.009 3 H 0.019 0.981 4 C -0.033 4.033 5 C -0.562 4.562 6 H 0.049 0.951 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.162 1.162 13 N -0.248 5.248 14 C -0.088 4.088 15 C -0.134 4.134 16 C 0.030 3.970 17 C -0.191 4.191 18 C -0.079 4.079 19 N -0.177 5.177 20 C -0.133 4.133 21 C -0.088 4.088 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.019 0.981 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 2.883 -8.977 -20.338 22.417 hybrid contribution 0.524 0.958 1.132 1.572 sum 3.407 -8.020 -19.206 21.090 Atomic orbital electron populations 1.21707 0.93715 1.02300 1.00581 1.21355 0.96208 0.93469 0.89892 0.98145 1.19522 0.95680 0.96366 0.91762 1.21403 1.34744 1.08763 0.91262 0.95091 1.25979 0.96850 1.01067 0.95328 1.70074 1.48919 1.41825 0.98657 0.85692 0.78867 0.79890 0.78451 1.19636 1.21118 1.16180 1.62104 1.06953 1.54152 1.01618 1.22276 0.88297 0.97515 1.00703 1.21764 1.01066 1.01134 0.89439 1.18797 0.96846 0.82267 0.99126 1.21872 1.02531 1.00079 0.94571 1.29951 0.91754 0.95177 0.90986 1.81201 1.11237 1.14015 1.11215 1.21775 0.91041 1.03683 0.96807 1.22362 1.01256 0.94811 0.90390 0.94148 0.91775 0.91501 0.96725 0.95108 0.92626 0.98084 0.90622 0.86333 0.89621 0.91034 0.91486 0.87596 0.86228 0.89005 0.88768 0.98074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.60 71.98 0.62 -3.97 16 2 C 0.10 3.95 2.11 44.91 0.09 4.04 16 3 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 4 C 0.00 0.20 3.44 29.85 0.10 0.30 16 5 C -0.52 -30.22 8.93 25.60 0.23 -29.99 16 6 H 0.03 1.98 7.25 -2.91 -0.02 1.96 16 7 C 0.00 0.24 5.47 84.65 0.46 0.70 16 8 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 9 Si 0.95 44.15 27.49 68.60 1.89 46.03 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.24 -10.14 6.51 99.48 0.65 -9.50 16 13 N -0.52 -16.13 4.53 -871.11 -3.94 -20.07 16 14 C 0.04 1.18 5.03 86.32 0.43 1.61 16 15 C -0.10 -1.76 4.86 30.65 0.15 -1.61 16 16 C 0.03 0.55 0.72 -53.91 -0.04 0.51 16 17 C -0.13 -1.17 8.44 71.98 0.61 -0.57 16 18 C 0.24 5.92 11.60 89.44 1.04 6.96 16 19 N -0.50 -15.91 18.54 20.01 0.37 -15.54 16 20 C -0.09 -1.48 4.86 30.65 0.15 -1.33 16 21 C 0.04 0.99 4.90 86.33 0.42 1.41 16 22 H 0.04 1.71 6.88 -2.39 -0.02 1.69 16 23 H 0.06 1.94 6.21 -2.39 -0.01 1.92 16 24 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.01 0.67 5.61 -2.38 -0.01 0.66 16 26 H 0.03 1.42 7.12 -2.39 -0.02 1.40 16 27 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.00 0.03 7.31 -2.39 -0.02 0.01 16 29 H 0.08 2.43 5.96 -2.39 -0.01 2.42 16 30 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 2.20 5.88 -2.38 -0.01 2.18 16 38 H 0.00 0.03 7.31 -2.39 -0.02 0.01 16 Total: -1.00 -72.35 295.33 3.85 -68.50 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 0.97 Total: 3.11 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 4.27 Total: -21.93 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -3.27 Total: -95.71 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.89 Total: 46.03 kcal Total: -72.35 3.85 -68.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573566823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.158 kcal (2) G-P(sol) polarization free energy of solvation -72.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds