Wall clock time and date at job start Sun Mar 29 2020 22:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 C 1.34843 * 125.88827 * 84.69095 * 6 5 4 8 8 C 1.40897 * 107.41670 * 179.88714 * 7 6 5 9 9 C 1.34849 * 107.41205 * 0.37522 * 8 7 6 10 10 N 1.36336 * 108.22294 * 359.77553 * 9 8 7 11 11 C 1.46497 * 125.63883 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46897 * 111.00133 * 275.00091 * 12 2 1 14 14 C 1.50705 * 109.47250 * 180.02562 * 13 12 2 15 15 H 1.07998 * 119.99737 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99980 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00134 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00122 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47299 * 89.99922 * 18 16 14 20 20 H 1.48499 * 109.46999 * 210.00615 * 18 16 14 21 21 H 1.48503 * 109.46883 * 330.00308 * 18 16 14 22 22 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 26 26 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 27 27 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 28 28 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 29 29 H 1.08007 * 126.29638 * 0.02562 * 7 6 5 30 30 H 1.07999 * 126.29457 * 180.17445 * 8 7 6 31 31 H 1.08001 * 125.88948 * 179.80355 * 9 8 7 32 32 H 1.08996 * 109.46864 * 269.97279 * 11 10 9 33 33 H 1.09002 * 109.47045 * 29.96899 * 11 10 9 34 34 H 1.09005 * 109.47436 * 149.97212 * 11 10 9 35 35 H 1.00901 * 110.99931 * 151.04418 * 12 2 1 36 36 H 1.09003 * 109.46826 * 299.99875 * 13 12 2 37 37 H 1.08993 * 109.47326 * 59.99934 * 13 12 2 38 38 H 0.97001 * 120.00709 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 6 4.1461 -0.7971 -3.7836 8 6 4.6693 -1.7929 -4.6321 9 6 4.8821 -2.8923 -3.8807 10 7 4.5142 -2.6101 -2.5985 11 6 4.5880 -3.5363 -1.4659 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 1 2.8382 -1.5696 3.4793 16 6 2.7319 0.1352 4.7594 17 7 3.1731 -0.5142 5.8145 18 14 2.2996 1.9477 4.8918 19 1 0.8701 2.0894 5.2682 20 1 3.1502 2.5850 5.9288 21 1 2.5348 2.6095 3.5833 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 -1.2056 26 1 1.6053 -0.2617 -2.1370 27 1 3.8532 0.4369 -1.3574 28 1 3.9994 -1.0729 -0.4261 29 1 3.8629 0.2044 -4.0723 30 1 4.8612 -1.6950 -5.6903 31 1 5.2764 -3.8338 -4.2335 32 1 3.6520 -4.0892 -1.3872 33 1 5.4106 -4.2345 -1.6205 34 1 4.7563 -2.9742 -0.5472 35 1 2.9174 -1.1205 1.0287 36 1 2.7589 1.0461 2.1182 37 1 1.0872 0.6162 2.5525 38 1 3.2743 -0.0521 6.6613 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574982837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:06 Heat of formation + Delta-G solvation = 36.252882 kcal Electronic energy + Delta-G solvation = -16552.409145 eV Core-core repulsion = 14009.215981 eV Total energy + Delta-G solvation = -2543.193164 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15753 -37.17897 -33.38561 -32.78133 -32.07617 -30.18572 -27.41363 -26.46138 -26.30491 -23.44161 -21.29522 -20.50239 -19.89141 -19.00467 -16.92970 -16.71039 -15.35077 -15.18351 -14.98882 -14.27094 -13.63726 -13.48392 -13.41791 -13.04381 -12.66503 -12.50754 -12.34483 -12.09019 -12.00344 -11.84726 -11.68521 -11.50207 -11.08609 -10.82351 -10.73539 -10.36582 -10.17100 -9.78469 -9.27441 -8.60313 -8.54057 -7.90992 -7.46628 -6.07707 -4.05548 2.31502 3.02263 3.09292 3.27861 3.35070 3.37638 4.40773 4.78473 4.81546 4.98154 5.07702 5.14596 5.23306 5.25979 5.29642 5.45977 5.51639 5.66014 5.70062 5.84324 5.85665 6.00347 6.05123 6.26329 6.31945 6.36153 6.44870 6.48986 6.67049 6.81898 7.02846 7.11045 7.31390 7.44130 7.61733 7.91242 8.34393 8.64083 8.99596 9.54759 11.05591 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.031671 B = 0.005184 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.865106 B = 5400.039445 C = 5805.917606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.035 0.965 4 C -0.109 4.109 5 C -0.058 4.058 6 C 0.030 3.970 7 C -0.205 4.205 8 C -0.202 4.202 9 C -0.025 4.025 10 N -0.445 5.445 11 C 0.068 3.932 12 N -0.676 5.676 13 C 0.164 3.836 14 C -0.516 4.516 15 H 0.078 0.922 16 C 0.069 3.931 17 N -0.901 5.901 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.268 1.268 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.332 0.668 36 H -0.017 1.017 37 H 0.022 0.978 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -2.295 -17.873 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 H 0.053 0.947 4 C -0.147 4.147 5 C -0.096 4.096 6 C -0.082 4.082 7 C -0.230 4.230 8 C -0.227 4.227 9 C -0.155 4.155 10 N -0.121 5.121 11 C -0.074 4.074 12 N -0.309 5.309 13 C 0.036 3.964 14 C -0.554 4.554 15 H 0.096 0.904 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.192 1.192 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.175 0.825 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.001 0.999 37 H 0.040 0.960 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.873 -2.770 -17.204 17.448 hybrid contribution 0.605 1.412 0.005 1.536 sum 1.477 -1.358 -17.199 17.316 Atomic orbital electron populations 1.21747 0.95211 1.01885 1.00536 1.21545 0.95744 0.95797 0.90266 0.94692 1.21722 0.93604 1.01586 0.97801 1.20245 0.96199 0.99928 0.93244 1.20402 1.05621 0.84960 0.97220 1.20635 1.09820 1.00222 0.92297 1.20817 1.08670 0.94041 0.99195 1.21723 1.09373 1.00747 0.83616 1.43975 1.49288 1.10730 1.08120 1.22063 1.03199 0.93413 0.88691 1.60571 1.32813 1.34087 1.03429 1.20034 0.95582 0.91263 0.89545 1.21064 1.43355 0.98578 0.92402 0.90425 1.24900 0.94764 0.97980 0.95643 1.69896 1.46718 1.36532 1.00862 0.86833 0.78758 0.85937 0.78068 1.20129 1.21221 1.19237 0.92686 0.93540 0.92349 0.91474 0.91486 0.90047 0.90870 0.85092 0.85116 0.82532 0.90725 0.90099 0.89294 0.84933 0.99921 0.95960 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.42 37.16 0.35 -1.76 16 2 C 0.08 1.27 2.65 -67.71 -0.18 1.09 16 3 H 0.04 0.60 7.80 -51.93 -0.40 0.19 16 4 C -0.11 -1.50 4.79 -26.73 -0.13 -1.63 16 5 C -0.06 -0.78 5.32 -27.88 -0.15 -0.93 16 6 C 0.03 0.40 6.14 -81.79 -0.50 -0.10 16 7 C -0.21 -2.73 10.76 -39.78 -0.43 -3.16 16 8 C -0.20 -2.48 10.86 -39.78 -0.43 -2.92 16 9 C -0.03 -0.29 11.43 -16.75 -0.19 -0.48 16 10 N -0.45 -5.52 3.15 -119.90 -0.38 -5.90 16 11 C 0.07 0.68 10.91 59.85 0.65 1.33 16 12 N -0.68 -13.67 6.30 -107.99 -0.68 -14.35 16 13 C 0.16 3.96 4.31 -4.98 -0.02 3.93 16 14 C -0.52 -14.67 9.87 -34.44 -0.34 -15.01 16 15 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 18 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 22 H 0.05 0.93 7.45 -51.93 -0.39 0.54 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.03 5.20 -51.93 -0.27 0.76 16 29 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.92 6.95 -51.93 -0.36 0.56 16 35 H 0.33 6.41 6.46 -39.29 -0.25 6.15 16 36 H -0.02 -0.41 7.11 -51.93 -0.37 -0.78 16 37 H 0.02 0.55 6.86 -51.93 -0.36 0.19 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 308.93 15.07 4.66 4.66 Total: -1.00 -31.54 308.93 -7.98 -39.52 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.22 Total: 3.70 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.47 Total: -17.73 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.28 Total: -47.09 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.54 -7.98 -39.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574982837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.774 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds