Wall clock time and date at job start Sun Mar 29 2020 22:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 C 1.34843 * 125.88827 * 84.69095 * 6 5 4 8 8 C 1.40897 * 107.41670 * 179.88714 * 7 6 5 9 9 C 1.34849 * 107.41205 * 0.37522 * 8 7 6 10 10 N 1.36336 * 108.22294 * 359.77553 * 9 8 7 11 11 C 1.46497 * 125.63883 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46897 * 111.00133 * 275.00091 * 12 2 1 14 14 C 1.50705 * 109.47250 * 180.02562 * 13 12 2 15 15 H 1.07998 * 119.99737 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99980 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00134 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00122 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47299 * 89.99922 * 18 16 14 20 20 H 1.48499 * 109.46999 * 210.00615 * 18 16 14 21 21 H 1.48503 * 109.46883 * 330.00308 * 18 16 14 22 22 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 26 26 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 27 27 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 28 28 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 29 29 H 1.08007 * 126.29638 * 0.02562 * 7 6 5 30 30 H 1.07999 * 126.29457 * 180.17445 * 8 7 6 31 31 H 1.08001 * 125.88948 * 179.80355 * 9 8 7 32 32 H 1.08996 * 109.46864 * 269.97279 * 11 10 9 33 33 H 1.09002 * 109.47045 * 29.96899 * 11 10 9 34 34 H 1.09005 * 109.47436 * 149.97212 * 11 10 9 35 35 H 1.00901 * 110.99931 * 151.04418 * 12 2 1 36 36 H 1.09003 * 109.46826 * 299.99875 * 13 12 2 37 37 H 1.08993 * 109.47326 * 59.99934 * 13 12 2 38 38 H 0.97001 * 120.00709 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 6 4.1461 -0.7971 -3.7836 8 6 4.6693 -1.7929 -4.6321 9 6 4.8821 -2.8923 -3.8807 10 7 4.5142 -2.6101 -2.5985 11 6 4.5880 -3.5363 -1.4659 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 1 2.8382 -1.5696 3.4793 16 6 2.7319 0.1352 4.7594 17 7 3.1731 -0.5142 5.8145 18 14 2.2996 1.9477 4.8918 19 1 0.8701 2.0894 5.2682 20 1 3.1502 2.5850 5.9288 21 1 2.5348 2.6095 3.5833 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 -1.2056 26 1 1.6053 -0.2617 -2.1370 27 1 3.8532 0.4369 -1.3574 28 1 3.9994 -1.0729 -0.4261 29 1 3.8629 0.2044 -4.0723 30 1 4.8612 -1.6950 -5.6903 31 1 5.2764 -3.8338 -4.2335 32 1 3.6520 -4.0892 -1.3872 33 1 5.4106 -4.2345 -1.6205 34 1 4.7563 -2.9742 -0.5472 35 1 2.9174 -1.1205 1.0287 36 1 2.7589 1.0461 2.1182 37 1 1.0872 0.6162 2.5525 38 1 3.2743 -0.0521 6.6613 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574982837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:05 Heat of formation + Delta-G solvation = 16.791280 kcal Electronic energy + Delta-G solvation = -16553.253063 eV Core-core repulsion = 14009.215981 eV Total energy + Delta-G solvation = -2544.037082 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.07679 -38.60022 -35.22235 -33.72565 -33.64465 -31.68178 -28.57130 -28.24975 -27.14673 -24.63216 -23.20862 -21.41784 -21.26561 -19.94411 -18.90844 -17.79926 -16.81785 -16.60559 -16.12111 -15.82314 -15.06442 -14.80083 -14.61821 -14.42808 -13.99584 -13.86901 -13.57700 -13.27049 -13.13713 -13.03625 -12.86918 -12.72217 -12.62232 -12.32038 -12.23815 -11.84746 -11.68047 -11.53155 -11.35409 -10.80962 -9.46095 -9.12282 -8.85497 -8.30865 -6.34826 1.34473 1.35190 1.37849 1.46303 2.14485 2.16632 2.33151 3.03611 3.50469 3.72577 4.02049 4.03834 4.10581 4.30731 4.36586 4.42287 4.56759 4.66557 4.72637 4.76896 4.78547 4.81497 4.84821 4.95902 5.00661 5.11887 5.13443 5.29369 5.40065 5.44310 5.48851 5.58057 5.99460 6.17814 6.37575 6.56125 6.58548 6.67677 6.79168 7.30600 8.85748 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.031671 B = 0.005184 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.865106 B = 5400.039445 C = 5805.917606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.075 3.925 3 H 0.035 0.965 4 C -0.094 4.094 5 C -0.052 4.052 6 C 0.008 3.992 7 C -0.218 4.218 8 C -0.219 4.219 9 C -0.024 4.024 10 N -0.452 5.452 11 C 0.064 3.936 12 N -0.684 5.684 13 C 0.176 3.824 14 C -0.526 4.526 15 H 0.038 0.962 16 C 0.010 3.990 17 N -0.947 5.947 18 Si 0.948 3.052 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.252 1.252 22 H 0.038 0.962 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.186 0.814 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.334 0.666 36 H -0.016 1.016 37 H 0.022 0.978 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -1.404 -19.609 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.035 4.035 3 H 0.053 0.947 4 C -0.132 4.132 5 C -0.090 4.090 6 C -0.104 4.104 7 C -0.243 4.243 8 C -0.244 4.244 9 C -0.154 4.154 10 N -0.128 5.128 11 C -0.077 4.077 12 N -0.317 5.317 13 C 0.047 3.953 14 C -0.565 4.565 15 H 0.057 0.943 16 C -0.188 4.188 17 N -0.587 5.587 18 Si 0.771 3.229 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.176 1.176 22 H 0.057 0.943 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.166 0.834 31 H 0.203 0.797 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.154 0.846 36 H 0.002 0.998 37 H 0.040 0.960 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.503 -1.889 -18.963 19.063 hybrid contribution 0.749 1.017 0.498 1.357 sum 1.252 -0.873 -18.464 18.527 Atomic orbital electron populations 1.21747 0.94252 1.01958 1.01238 1.21671 0.96450 0.95689 0.89657 0.94739 1.21579 0.93812 1.00945 0.96882 1.20134 0.95891 0.99936 0.93034 1.20424 1.06951 0.85835 0.97182 1.20899 1.09920 1.00901 0.92560 1.21135 1.08989 0.94071 1.00193 1.22271 1.08227 1.01739 0.83137 1.44196 1.48979 1.10653 1.08956 1.22198 1.04455 0.93336 0.87727 1.60492 1.33183 1.33855 1.04133 1.19764 0.94971 0.91213 0.89364 1.21344 1.43327 0.97302 0.94479 0.94335 1.25836 0.94546 1.03266 0.95110 1.70043 1.48185 1.38853 1.01664 0.85709 0.78847 0.79556 0.78794 1.19118 1.20603 1.17571 0.94290 0.90527 0.92609 0.91998 0.89802 0.89983 0.92040 0.84469 0.83443 0.79655 0.90280 0.87710 0.90344 0.84636 0.99841 0.95988 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.42 71.98 0.68 -3.23 16 2 C 0.08 2.37 2.65 44.92 0.12 2.49 16 3 H 0.03 1.12 7.80 -2.39 -0.02 1.10 16 4 C -0.09 -2.45 4.79 30.60 0.15 -2.30 16 5 C -0.05 -1.35 5.32 29.85 0.16 -1.19 16 6 C 0.01 0.21 6.14 41.08 0.25 0.46 16 7 C -0.22 -5.50 10.76 22.14 0.24 -5.27 16 8 C -0.22 -4.97 10.86 22.14 0.24 -4.73 16 9 C -0.02 -0.51 11.43 83.21 0.95 0.45 16 10 N -0.45 -10.57 3.15 -533.27 -1.68 -12.25 16 11 C 0.06 1.20 10.91 127.77 1.39 2.60 16 12 N -0.68 -27.47 6.30 -495.57 -3.12 -30.59 16 13 C 0.18 8.41 4.31 85.56 0.37 8.78 16 14 C -0.53 -30.52 9.87 25.60 0.25 -30.27 16 15 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 16 C 0.01 0.58 5.47 84.65 0.46 1.05 16 17 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 18 Si 0.95 44.25 27.47 68.60 1.88 46.13 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 22 H 0.04 1.25 7.45 -2.39 -0.02 1.23 16 23 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 1.73 5.20 -2.39 -0.01 1.72 16 29 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.63 6.95 -2.38 -0.02 1.61 16 35 H 0.33 13.05 6.46 -89.69 -0.58 12.47 16 36 H -0.02 -0.76 7.11 -2.39 -0.02 -0.78 16 37 H 0.02 1.06 6.86 -2.39 -0.02 1.05 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -67.67 308.93 3.03 -64.63 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.39 Total: 22.10 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 5.26 Total: -31.17 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -4.50 Total: -101.70 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -67.67 3.03 -64.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574982837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.426 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds