Wall clock time and date at job start Sun Mar 29 2020 21:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47234 * 2 1 4 4 C 1.50692 * 109.47193 * 239.99389 * 2 1 3 5 5 N 1.31790 * 119.08316 * 285.80828 * 4 2 1 6 6 C 1.32545 * 121.01175 * 180.27605 * 5 4 2 7 7 C 1.38119 * 119.20188 * 0.02562 * 6 5 4 8 8 C 1.39627 * 118.32791 * 359.97438 * 7 6 5 9 9 N 1.38543 * 120.52898 * 180.02562 * 8 7 6 10 10 N 1.31748 * 119.08600 * 106.08553 * 4 2 1 11 11 N 1.46903 * 109.46834 * 119.99265 * 2 1 3 12 12 C 1.46900 * 110.99949 * 304.47675 * 11 2 1 13 13 C 1.46897 * 110.99926 * 180.52523 * 11 2 1 14 14 C 1.50703 * 109.47433 * 190.00186 * 13 11 2 15 15 H 1.08007 * 119.99555 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00454 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00307 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99940 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47424 * 89.99512 * 18 16 14 20 20 H 1.48497 * 109.47061 * 209.99965 * 18 16 14 21 21 H 1.48500 * 109.46828 * 329.99464 * 18 16 14 22 22 H 1.09002 * 109.47184 * 300.00830 * 1 2 3 23 23 H 1.09004 * 109.46936 * 60.00652 * 1 2 3 24 24 H 1.08994 * 109.47041 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.40261 * 180.02562 * 6 5 4 26 26 H 1.07998 * 120.83614 * 179.97438 * 7 6 5 27 27 H 0.96998 * 120.00448 * 179.97438 * 9 8 7 28 28 H 0.97005 * 119.99904 * 359.97387 * 9 8 7 29 29 H 1.08999 * 109.47000 * 65.68839 * 12 11 2 30 30 H 1.09002 * 109.47230 * 185.68461 * 12 11 2 31 31 H 1.08996 * 109.47681 * 305.67959 * 12 11 2 32 32 H 1.09006 * 109.47286 * 309.99661 * 13 11 2 33 33 H 1.09001 * 109.47339 * 69.99801 * 13 11 2 34 34 H 0.96997 * 119.99947 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 7 1.9501 -2.0245 -1.2897 6 6 2.3851 -2.6887 -2.3510 7 6 2.9326 -1.9870 -3.4073 8 6 3.0047 -0.5959 -3.3122 9 7 3.5447 0.1531 -4.3451 10 7 2.5466 -0.0013 -2.2144 11 7 2.0196 -0.6924 1.1996 12 6 1.4631 -0.0907 2.4187 13 6 3.4880 -0.7011 1.2399 14 6 3.9550 -1.6206 2.3388 15 1 3.2330 -2.1457 2.9467 16 6 5.3037 -1.7916 2.5680 17 7 5.7112 -2.5937 3.5273 18 14 6.5524 -0.8830 1.5170 19 1 6.8653 0.4274 2.1416 20 1 7.7939 -1.6911 1.4135 21 1 5.9905 -0.6629 0.1601 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 2.3125 -3.7656 -2.3895 26 1 3.2956 -2.5015 -4.2847 27 1 3.5907 1.1192 -4.2711 28 1 3.8767 -0.2886 -5.1423 29 1 0.3850 -0.2495 2.4427 30 1 1.9184 -0.5550 3.2935 31 1 1.6731 0.9789 2.4246 32 1 3.8757 -1.0520 0.2834 33 1 3.8523 0.3082 1.4313 34 1 6.6601 -2.7137 3.6888 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578334596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:40 Heat of formation + Delta-G solvation = 63.479804 kcal Electronic energy + Delta-G solvation = -16953.599200 eV Core-core repulsion = 14308.046341 eV Total energy + Delta-G solvation = -2645.552859 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.67812 -37.26661 -35.23082 -32.99590 -32.33492 -30.81956 -29.59201 -27.42655 -25.69465 -23.56229 -23.42426 -21.41250 -19.71840 -17.95561 -17.24888 -16.64115 -15.69999 -15.13516 -14.99081 -14.68535 -14.52832 -14.11534 -13.39134 -13.17725 -12.76955 -12.39674 -11.88910 -11.86103 -11.50487 -11.29906 -11.13868 -10.84337 -10.58722 -10.29793 -10.10935 -9.77767 -9.58914 -9.20850 -8.77175 -8.51922 -8.21191 -7.27945 -5.99548 -3.94796 1.33501 1.73572 3.30213 3.36681 3.37603 3.42325 4.19714 4.39781 4.46778 4.58963 4.98003 5.13578 5.32894 5.40920 5.48889 5.65376 5.80189 5.84780 5.98763 6.11166 6.25030 6.29430 6.51383 6.61839 6.77509 6.92750 7.02601 7.07690 7.24780 7.67082 7.80334 7.95361 8.11572 8.68650 8.75495 9.10628 9.63211 11.13707 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.009701 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.365278 B = 2885.492447 C = 3648.049701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.144 3.856 3 H 0.054 0.946 4 C 0.382 3.618 5 N -0.512 5.512 6 C 0.175 3.825 7 C -0.306 4.306 8 C 0.432 3.568 9 N -0.844 5.844 10 N -0.582 5.582 11 N -0.510 5.510 12 C 0.034 3.966 13 C 0.167 3.833 14 C -0.499 4.499 15 H 0.084 0.916 16 C 0.069 3.931 17 N -0.901 5.901 18 Si 0.871 3.129 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.272 1.272 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.163 0.837 26 H 0.135 0.865 27 H 0.404 0.596 28 H 0.408 0.592 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.011 0.989 32 H 0.021 0.979 33 H -0.019 1.019 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 4.910 -14.832 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.033 3.967 3 H 0.072 0.928 4 C 0.114 3.886 5 N -0.229 5.229 6 C 0.012 3.988 7 C -0.334 4.334 8 C 0.186 3.814 9 N -0.388 5.388 10 N -0.307 5.307 11 N -0.235 5.235 12 C -0.114 4.114 13 C 0.041 3.959 14 C -0.537 4.537 15 H 0.102 0.898 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.699 3.301 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.197 1.197 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.181 0.819 26 H 0.153 0.847 27 H 0.233 0.767 28 H 0.238 0.762 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.029 0.971 32 H 0.039 0.961 33 H -0.002 1.002 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.368 4.766 -13.946 16.477 hybrid contribution 1.851 1.016 -1.734 2.733 sum -5.516 5.782 -15.680 17.599 Atomic orbital electron populations 1.21814 0.93120 1.03180 1.01337 1.20284 0.95438 0.94106 0.86862 0.92826 1.22687 0.87372 0.86758 0.91823 1.68364 1.20749 1.09070 1.24712 1.23015 0.88307 1.00675 0.86852 1.22058 1.13376 0.93731 1.04246 1.18449 0.87382 0.88498 0.87043 1.42080 1.68402 1.09877 1.18476 1.67693 1.18852 1.41874 1.02248 1.61939 1.10628 1.51649 0.99276 1.22334 0.98991 0.95922 0.94149 1.20141 0.82916 0.94983 0.97906 1.21017 0.92480 1.25310 1.14917 0.89822 1.24854 0.98143 0.95173 0.95067 1.69889 1.15195 1.37611 1.31340 0.86924 0.81478 0.80128 0.81592 1.20272 1.21154 1.19714 0.91519 0.93044 0.90946 0.81935 0.84684 0.76661 0.76204 0.92635 0.89693 0.97075 0.96099 1.00175 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.80 37.16 0.33 -1.78 16 2 C 0.14 2.78 2.46 -68.87 -0.17 2.61 16 3 H 0.05 1.04 8.11 -51.93 -0.42 0.62 16 4 C 0.38 7.59 4.95 -157.24 -0.78 6.81 16 5 N -0.51 -10.18 10.07 -10.81 -0.11 -10.29 16 6 C 0.18 2.81 11.29 -17.29 -0.20 2.62 16 7 C -0.31 -4.30 10.04 -39.11 -0.39 -4.69 16 8 C 0.43 6.60 7.82 -154.78 -1.21 5.39 16 9 N -0.84 -8.85 9.06 31.24 0.28 -8.57 16 10 N -0.58 -10.72 10.35 -9.97 -0.10 -10.82 16 11 N -0.51 -11.41 4.44 -237.73 -1.05 -12.47 16 12 C 0.03 0.67 8.79 60.06 0.53 1.20 16 13 C 0.17 4.36 3.63 -4.98 -0.02 4.34 16 14 C -0.50 -14.77 8.93 -34.44 -0.31 -15.08 16 15 H 0.08 2.66 7.42 -52.48 -0.39 2.27 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 18 Si 0.87 22.78 27.47 -169.99 -4.67 18.11 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 21 H -0.27 -7.15 6.54 56.52 0.37 -6.78 16 22 H 0.07 0.92 6.47 -51.93 -0.34 0.58 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.16 2.05 8.06 -52.48 -0.42 1.63 16 26 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.40 3.86 8.95 -40.82 -0.37 3.50 16 28 H 0.41 2.91 8.84 -40.82 -0.36 2.55 16 29 H 0.05 0.92 6.58 -51.93 -0.34 0.58 16 30 H 0.08 1.85 6.65 -51.93 -0.35 1.50 16 31 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 32 H 0.02 0.59 5.81 -51.93 -0.30 0.28 16 33 H -0.02 -0.51 7.55 -51.93 -0.39 -0.90 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 283.51 15.07 4.27 4.27 Total: -1.00 -35.04 283.51 -7.46 -42.49 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.53 Total: 1.42 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.31 Total: 3.38 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -0.21 Total: -69.68 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.04 -7.46 -42.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578334596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.973 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds