Wall clock time and date at job start Sun Mar 29 2020 21:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47234 * 2 1 4 4 C 1.50692 * 109.47193 * 239.99389 * 2 1 3 5 5 N 1.31790 * 119.08316 * 285.80828 * 4 2 1 6 6 C 1.32545 * 121.01175 * 180.27605 * 5 4 2 7 7 C 1.38119 * 119.20188 * 0.02562 * 6 5 4 8 8 C 1.39627 * 118.32791 * 359.97438 * 7 6 5 9 9 N 1.38543 * 120.52898 * 180.02562 * 8 7 6 10 10 N 1.31748 * 119.08600 * 106.08553 * 4 2 1 11 11 N 1.46903 * 109.46834 * 119.99265 * 2 1 3 12 12 C 1.46900 * 110.99949 * 304.47675 * 11 2 1 13 13 C 1.46897 * 110.99926 * 180.52523 * 11 2 1 14 14 C 1.50703 * 109.47433 * 190.00186 * 13 11 2 15 15 H 1.08007 * 119.99555 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00454 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00307 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99940 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47424 * 89.99512 * 18 16 14 20 20 H 1.48497 * 109.47061 * 209.99965 * 18 16 14 21 21 H 1.48500 * 109.46828 * 329.99464 * 18 16 14 22 22 H 1.09002 * 109.47184 * 300.00830 * 1 2 3 23 23 H 1.09004 * 109.46936 * 60.00652 * 1 2 3 24 24 H 1.08994 * 109.47041 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.40261 * 180.02562 * 6 5 4 26 26 H 1.07998 * 120.83614 * 179.97438 * 7 6 5 27 27 H 0.96998 * 120.00448 * 179.97438 * 9 8 7 28 28 H 0.97005 * 119.99904 * 359.97387 * 9 8 7 29 29 H 1.08999 * 109.47000 * 65.68839 * 12 11 2 30 30 H 1.09002 * 109.47230 * 185.68461 * 12 11 2 31 31 H 1.08996 * 109.47681 * 305.67959 * 12 11 2 32 32 H 1.09006 * 109.47286 * 309.99661 * 13 11 2 33 33 H 1.09001 * 109.47339 * 69.99801 * 13 11 2 34 34 H 0.96997 * 119.99947 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 7 1.9501 -2.0245 -1.2897 6 6 2.3851 -2.6887 -2.3510 7 6 2.9326 -1.9870 -3.4073 8 6 3.0047 -0.5959 -3.3122 9 7 3.5447 0.1531 -4.3451 10 7 2.5466 -0.0013 -2.2144 11 7 2.0196 -0.6924 1.1996 12 6 1.4631 -0.0907 2.4187 13 6 3.4880 -0.7011 1.2399 14 6 3.9550 -1.6206 2.3388 15 1 3.2330 -2.1457 2.9467 16 6 5.3037 -1.7916 2.5680 17 7 5.7112 -2.5937 3.5273 18 14 6.5524 -0.8830 1.5170 19 1 6.8653 0.4274 2.1416 20 1 7.7939 -1.6911 1.4135 21 1 5.9905 -0.6629 0.1601 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 2.3125 -3.7656 -2.3895 26 1 3.2956 -2.5015 -4.2847 27 1 3.5907 1.1192 -4.2711 28 1 3.8767 -0.2886 -5.1423 29 1 0.3850 -0.2495 2.4427 30 1 1.9184 -0.5550 3.2935 31 1 1.6731 0.9789 2.4246 32 1 3.8757 -1.0520 0.2834 33 1 3.8523 0.3082 1.4313 34 1 6.6601 -2.7137 3.6888 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578334596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:40 Heat of formation + Delta-G solvation = 35.581362 kcal Electronic energy + Delta-G solvation = -16954.808968 eV Core-core repulsion = 14308.046341 eV Total energy + Delta-G solvation = -2646.762626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.91901 -38.84013 -36.38399 -34.93294 -33.88776 -32.29873 -30.92040 -29.24684 -27.32656 -24.99888 -24.61018 -23.27536 -21.25843 -19.11345 -19.10008 -18.20584 -16.90393 -16.59366 -16.39976 -16.27542 -15.95006 -15.69299 -14.94360 -14.60842 -14.46030 -14.28672 -13.59159 -13.38359 -12.97439 -12.81548 -12.66330 -12.50373 -12.34359 -11.93444 -11.87478 -11.50082 -11.40132 -10.86079 -10.81083 -10.05747 -9.27127 -9.00783 -8.31780 -6.32509 0.10533 0.54105 1.23601 1.24953 1.35852 2.27320 2.34963 2.92233 3.00156 3.16668 3.19592 3.68074 4.01194 4.20116 4.29163 4.39608 4.46218 4.55875 4.65621 4.70440 4.82591 4.91040 4.95337 4.97291 5.19635 5.34183 5.46480 5.52365 5.93451 6.03264 6.24188 6.37359 6.60085 6.72675 6.88798 7.29583 7.47771 8.84887 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.009701 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.365278 B = 2885.492447 C = 3648.049701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.141 3.859 3 H 0.051 0.949 4 C 0.359 3.641 5 N -0.553 5.553 6 C 0.153 3.847 7 C -0.292 4.292 8 C 0.417 3.583 9 N -0.821 5.821 10 N -0.603 5.603 11 N -0.526 5.526 12 C 0.037 3.963 13 C 0.187 3.813 14 C -0.505 4.505 15 H 0.046 0.954 16 C 0.014 3.986 17 N -0.942 5.942 18 Si 0.940 3.060 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.189 0.811 26 H 0.177 0.823 27 H 0.410 0.590 28 H 0.426 0.574 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.005 0.995 33 H -0.025 1.025 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 5.919 -17.262 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.031 3.969 3 H 0.068 0.932 4 C 0.090 3.910 5 N -0.271 5.271 6 C -0.008 4.008 7 C -0.319 4.319 8 C 0.170 3.830 9 N -0.367 5.367 10 N -0.329 5.329 11 N -0.251 5.251 12 C -0.111 4.111 13 C 0.059 3.941 14 C -0.544 4.544 15 H 0.064 0.936 16 C -0.184 4.184 17 N -0.583 5.583 18 Si 0.765 3.235 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.199 1.199 22 H 0.103 0.897 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.206 0.794 26 H 0.195 0.805 27 H 0.241 0.759 28 H 0.259 0.741 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.023 0.977 33 H -0.007 1.007 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.151 5.779 -16.423 18.821 hybrid contribution 1.736 0.665 -1.052 2.136 sum -5.415 6.444 -17.475 19.396 Atomic orbital electron populations 1.21742 0.90378 1.03057 1.03077 1.20403 0.97587 0.93391 0.85536 0.93156 1.22661 0.88782 0.87110 0.92480 1.68288 1.22527 1.09452 1.26821 1.23553 0.88460 1.02030 0.86752 1.22441 1.11417 0.93323 1.04764 1.18862 0.87302 0.89620 0.87185 1.42042 1.66715 1.10159 1.17796 1.67659 1.19783 1.42313 1.03179 1.61812 1.08247 1.53534 1.01458 1.22324 1.00530 0.96204 0.92009 1.19743 0.85654 0.93337 0.95341 1.21197 0.92176 1.25547 1.15452 0.93568 1.25683 1.00272 0.96064 0.96350 1.70021 1.16001 1.39191 1.33046 0.85832 0.78870 0.79386 0.79443 1.18765 1.19916 1.19911 0.89732 0.91272 0.91917 0.79431 0.80524 0.75923 0.74059 0.89344 0.92741 0.95646 0.97670 1.00702 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 8.80 71.98 0.63 -3.03 16 2 C 0.14 5.37 2.46 44.17 0.11 5.48 16 3 H 0.05 1.92 8.11 -2.39 -0.02 1.90 16 4 C 0.36 14.07 4.95 138.76 0.69 14.75 16 5 N -0.55 -21.83 10.07 -188.12 -1.90 -23.72 16 6 C 0.15 4.71 11.29 84.56 0.95 5.67 16 7 C -0.29 -7.38 10.04 22.58 0.23 -7.16 16 8 C 0.42 11.75 7.82 133.16 1.04 12.79 16 9 N -0.82 -14.61 9.06 -55.09 -0.50 -15.11 16 10 N -0.60 -21.47 10.35 -185.45 -1.92 -23.39 16 11 N -0.53 -23.68 4.44 -906.05 -4.02 -27.70 16 12 C 0.04 1.45 8.79 127.69 1.12 2.57 16 13 C 0.19 9.88 3.63 85.56 0.31 10.19 16 14 C -0.51 -30.83 8.93 25.60 0.23 -30.60 16 15 H 0.05 3.09 7.42 -2.91 -0.02 3.07 16 16 C 0.01 0.85 5.47 84.65 0.46 1.31 16 17 N -0.94 -60.35 13.96 21.45 0.30 -60.05 16 18 Si 0.94 47.26 27.47 68.60 1.88 49.14 16 19 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -13.78 6.54 99.48 0.65 -13.13 16 22 H 0.08 2.13 6.47 -2.39 -0.02 2.11 16 23 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.19 4.44 8.06 -2.91 -0.02 4.42 16 26 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 27 H 0.41 6.66 8.95 -92.71 -0.83 5.83 16 28 H 0.43 4.41 8.84 -92.70 -0.82 3.59 16 29 H 0.09 2.83 6.58 -2.39 -0.02 2.81 16 30 H 0.05 2.44 6.65 -2.39 -0.02 2.43 16 31 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.01 0.30 5.81 -2.38 -0.01 0.28 16 33 H -0.02 -1.30 7.55 -2.39 -0.02 -1.32 16 34 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -77.63 283.51 -0.95 -78.59 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -0.58 Total: 10.26 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.78 Total: 11.97 kcal Atomic # 7 Polarization: -141.93 SS G_CDS: -8.03 Total: -149.97 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.88 Total: 49.14 kcal Total: -77.63 -0.95 -78.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578334596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.169 kcal (2) G-P(sol) polarization free energy of solvation -77.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds