Wall clock time and date at job start Sun Mar 29 2020 21:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47194 * 2 1 4 4 C 1.50696 * 109.47827 * 120.00222 * 2 1 3 5 5 N 1.31797 * 119.07810 * 74.15086 * 4 2 1 6 6 C 1.32554 * 121.00437 * 180.02562 * 5 4 2 7 7 C 1.38114 * 119.20251 * 0.02562 * 6 5 4 8 8 C 1.39625 * 118.33386 * 0.02562 * 7 6 5 9 9 N 1.38543 * 120.53201 * 180.02562 * 8 7 6 10 10 N 1.31745 * 119.08908 * 253.89140 * 4 2 1 11 11 N 1.46903 * 109.46918 * 240.00492 * 2 1 3 12 12 C 1.46899 * 110.99881 * 57.94294 * 11 2 1 13 13 C 1.46901 * 111.00102 * 181.89570 * 11 2 1 14 14 C 1.50696 * 109.47193 * 170.00194 * 13 11 2 15 15 H 1.07999 * 120.00238 * 359.97438 * 14 13 11 16 16 C 1.37876 * 120.00178 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00038 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00193 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46870 * 90.00253 * 18 16 14 20 20 H 1.48500 * 109.47147 * 209.99693 * 18 16 14 21 21 H 1.48494 * 109.47018 * 330.00189 * 18 16 14 22 22 H 1.09013 * 109.46908 * 299.99700 * 1 2 3 23 23 H 1.08993 * 109.47490 * 59.99112 * 1 2 3 24 24 H 1.08995 * 109.47279 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.39262 * 179.97438 * 6 5 4 26 26 H 1.07999 * 120.83136 * 180.02562 * 7 6 5 27 27 H 0.97001 * 120.00085 * 359.97438 * 9 8 7 28 28 H 0.97002 * 120.00116 * 180.02562 * 9 8 7 29 29 H 1.09003 * 109.47147 * 177.02538 * 12 11 2 30 30 H 1.08998 * 109.46989 * 297.01844 * 12 11 2 31 31 H 1.08999 * 109.47656 * 57.02160 * 12 11 2 32 32 H 1.09001 * 109.47267 * 49.99947 * 13 11 2 33 33 H 1.09005 * 109.47222 * 289.99921 * 13 11 2 34 34 H 0.97002 * 120.00273 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.9494 -2.0244 1.2901 6 6 2.3792 -2.6880 2.3540 7 6 2.9208 -1.9858 3.4128 8 6 2.9929 -0.5947 3.3177 9 7 3.5280 0.1548 4.3527 10 7 2.5471 -0.0012 2.2141 11 7 2.0195 -0.6924 -1.1995 12 6 1.5087 -0.0552 -2.4206 13 6 3.4873 -0.7515 -1.2111 14 6 3.9444 -1.6714 -2.3137 15 1 3.2173 -2.1633 -2.9427 16 6 5.2908 -1.8858 -2.5189 17 7 6.1763 -1.2872 -1.7526 18 14 5.8574 -3.0267 -3.8852 19 1 6.0446 -2.2471 -5.1352 20 1 7.1440 -3.6601 -3.4996 21 1 4.8341 -4.0796 -4.1071 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0276 0.0005 25 1 2.3061 -3.7649 2.3926 26 1 3.2794 -2.4998 4.2923 27 1 3.8561 -0.2865 5.1519 28 1 3.5740 1.1209 4.2786 29 1 1.9284 -0.5545 -3.2939 30 1 0.4219 -0.1343 -2.4442 31 1 1.7968 0.9960 -2.4297 32 1 3.8434 -1.1285 -0.2523 33 1 3.8898 0.2472 -1.3809 34 1 7.1236 -1.4383 -1.8967 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578334597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:42 Heat of formation + Delta-G solvation = 59.561559 kcal Electronic energy + Delta-G solvation = -16880.338411 eV Core-core repulsion = 14234.615644 eV Total energy + Delta-G solvation = -2645.722767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53901 -37.09140 -35.08845 -32.95183 -32.27110 -30.62743 -29.38667 -26.94021 -25.53752 -23.50753 -23.30582 -21.68423 -19.65552 -17.82635 -17.01428 -16.24835 -15.58195 -15.03000 -14.89255 -14.67597 -14.36279 -13.99256 -13.26542 -13.22682 -12.66779 -11.89266 -11.82859 -11.67867 -11.39463 -11.13180 -10.97647 -10.71841 -10.54190 -10.33889 -10.08995 -9.79461 -9.44716 -9.10918 -8.64240 -8.36319 -8.06971 -7.11518 -5.94126 -3.94383 1.47738 1.87381 3.36613 3.42182 3.47708 3.50703 4.33651 4.48836 4.53647 4.74552 5.14197 5.27967 5.41342 5.52626 5.60751 5.77781 5.92288 5.96889 6.08578 6.20034 6.34376 6.38751 6.61935 6.74332 6.84492 7.17940 7.37353 7.39318 7.42151 7.87990 7.93598 8.17422 8.29640 8.62363 8.86133 9.13051 9.68508 11.16897 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.008168 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.202523 B = 3427.111841 C = 4097.656459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.146 3.854 3 H 0.053 0.947 4 C 0.387 3.613 5 N -0.514 5.514 6 C 0.175 3.825 7 C -0.306 4.306 8 C 0.433 3.567 9 N -0.844 5.844 10 N -0.579 5.579 11 N -0.520 5.520 12 C 0.036 3.964 13 C 0.198 3.802 14 C -0.498 4.498 15 H 0.065 0.935 16 C 0.052 3.948 17 N -0.901 5.901 18 Si 0.897 3.103 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.272 1.272 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.161 0.839 26 H 0.134 0.866 27 H 0.407 0.593 28 H 0.404 0.596 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.010 0.990 32 H 0.026 0.974 33 H -0.013 1.013 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.913 1.738 10.641 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.035 3.965 3 H 0.070 0.930 4 C 0.118 3.882 5 N -0.231 5.231 6 C 0.011 3.989 7 C -0.334 4.334 8 C 0.188 3.812 9 N -0.388 5.388 10 N -0.304 5.304 11 N -0.246 5.246 12 C -0.112 4.112 13 C 0.073 3.927 14 C -0.537 4.537 15 H 0.083 0.917 16 C -0.148 4.148 17 N -0.541 5.541 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.197 1.197 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.178 0.822 26 H 0.152 0.848 27 H 0.237 0.763 28 H 0.233 0.767 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.004 0.996 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.224 1.683 9.856 12.947 hybrid contribution 1.554 -0.015 0.530 1.642 sum -6.670 1.669 10.386 12.456 Atomic orbital electron populations 1.21808 0.93498 1.02960 1.01139 1.20235 0.95068 0.94215 0.86988 0.92951 1.22628 0.87122 0.86673 0.91785 1.68349 1.20959 1.09146 1.24603 1.22954 0.88519 1.00516 0.86937 1.22014 1.13504 0.93752 1.04150 1.18429 0.87360 0.88448 0.86983 1.42064 1.68722 1.09853 1.18196 1.67690 1.18829 1.41882 1.02010 1.62127 1.13656 1.49986 0.98816 1.22286 0.98628 0.96002 0.94322 1.19683 0.79863 0.95346 0.97816 1.21152 0.91359 1.26284 1.14913 0.91710 1.24999 0.96752 0.96385 0.96672 1.69984 1.01228 1.43769 1.39106 0.86506 0.78008 0.81007 0.81957 1.20791 1.21409 1.19701 0.93184 0.91702 0.91118 0.82184 0.84847 0.76295 0.76684 0.90350 0.93020 0.97151 0.95609 0.99557 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.87 37.15 0.33 -1.86 16 2 C 0.15 2.96 2.47 -68.87 -0.17 2.79 16 3 H 0.05 1.09 8.11 -51.93 -0.42 0.67 16 4 C 0.39 8.06 4.88 -157.24 -0.77 7.29 16 5 N -0.51 -10.64 9.95 -10.81 -0.11 -10.75 16 6 C 0.17 2.96 11.29 -17.29 -0.20 2.76 16 7 C -0.31 -4.59 10.04 -39.11 -0.39 -4.99 16 8 C 0.43 7.06 7.82 -154.77 -1.21 5.85 16 9 N -0.84 -9.66 9.06 31.24 0.28 -9.38 16 10 N -0.58 -11.31 10.35 -9.96 -0.10 -11.41 16 11 N -0.52 -12.03 4.44 -237.73 -1.06 -13.09 16 12 C 0.04 0.72 8.92 60.06 0.54 1.26 16 13 C 0.20 5.52 4.54 -4.98 -0.02 5.49 16 14 C -0.50 -14.64 8.42 -34.44 -0.29 -14.93 16 15 H 0.06 1.87 7.15 -52.49 -0.38 1.50 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -27.94 13.29 55.43 0.74 -27.21 16 18 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 23 H 0.06 0.93 6.44 -51.93 -0.33 0.60 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.16 2.15 8.06 -52.48 -0.42 1.72 16 26 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.41 3.28 8.84 -40.82 -0.36 2.91 16 28 H 0.40 4.26 8.95 -40.82 -0.37 3.89 16 29 H 0.08 1.67 6.70 -51.93 -0.35 1.33 16 30 H 0.05 0.87 6.44 -51.93 -0.33 0.54 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.03 0.79 6.57 -51.93 -0.34 0.45 16 33 H -0.01 -0.40 8.12 -51.93 -0.42 -0.82 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -34.79 286.83 -7.78 -42.57 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.55 Total: 2.47 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.28 Total: 5.11 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -0.25 Total: -71.83 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.79 -7.78 -42.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578334597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.131 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds