Wall clock time and date at job start Sun Mar 29 2020 21:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47194 * 2 1 4 4 C 1.50696 * 109.47827 * 120.00222 * 2 1 3 5 5 N 1.31797 * 119.07810 * 74.15086 * 4 2 1 6 6 C 1.32554 * 121.00437 * 180.02562 * 5 4 2 7 7 C 1.38114 * 119.20251 * 0.02562 * 6 5 4 8 8 C 1.39625 * 118.33386 * 0.02562 * 7 6 5 9 9 N 1.38543 * 120.53201 * 180.02562 * 8 7 6 10 10 N 1.31745 * 119.08908 * 253.89140 * 4 2 1 11 11 N 1.46903 * 109.46918 * 240.00492 * 2 1 3 12 12 C 1.46899 * 110.99881 * 57.94294 * 11 2 1 13 13 C 1.46901 * 111.00102 * 181.89570 * 11 2 1 14 14 C 1.50696 * 109.47193 * 170.00194 * 13 11 2 15 15 H 1.07999 * 120.00238 * 359.97438 * 14 13 11 16 16 C 1.37876 * 120.00178 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00038 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00193 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46870 * 90.00253 * 18 16 14 20 20 H 1.48500 * 109.47147 * 209.99693 * 18 16 14 21 21 H 1.48494 * 109.47018 * 330.00189 * 18 16 14 22 22 H 1.09013 * 109.46908 * 299.99700 * 1 2 3 23 23 H 1.08993 * 109.47490 * 59.99112 * 1 2 3 24 24 H 1.08995 * 109.47279 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.39262 * 179.97438 * 6 5 4 26 26 H 1.07999 * 120.83136 * 180.02562 * 7 6 5 27 27 H 0.97001 * 120.00085 * 359.97438 * 9 8 7 28 28 H 0.97002 * 120.00116 * 180.02562 * 9 8 7 29 29 H 1.09003 * 109.47147 * 177.02538 * 12 11 2 30 30 H 1.08998 * 109.46989 * 297.01844 * 12 11 2 31 31 H 1.08999 * 109.47656 * 57.02160 * 12 11 2 32 32 H 1.09001 * 109.47267 * 49.99947 * 13 11 2 33 33 H 1.09005 * 109.47222 * 289.99921 * 13 11 2 34 34 H 0.97002 * 120.00273 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.9494 -2.0244 1.2901 6 6 2.3792 -2.6880 2.3540 7 6 2.9208 -1.9858 3.4128 8 6 2.9929 -0.5947 3.3177 9 7 3.5280 0.1548 4.3527 10 7 2.5471 -0.0012 2.2141 11 7 2.0195 -0.6924 -1.1995 12 6 1.5087 -0.0552 -2.4206 13 6 3.4873 -0.7515 -1.2111 14 6 3.9444 -1.6714 -2.3137 15 1 3.2173 -2.1633 -2.9427 16 6 5.2908 -1.8858 -2.5189 17 7 6.1763 -1.2872 -1.7526 18 14 5.8574 -3.0267 -3.8852 19 1 6.0446 -2.2471 -5.1352 20 1 7.1440 -3.6601 -3.4996 21 1 4.8341 -4.0796 -4.1071 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0276 0.0005 25 1 2.3061 -3.7649 2.3926 26 1 3.2794 -2.4998 4.2923 27 1 3.8561 -0.2865 5.1519 28 1 3.5740 1.1209 4.2786 29 1 1.9284 -0.5545 -3.2939 30 1 0.4219 -0.1343 -2.4442 31 1 1.7968 0.9960 -2.4297 32 1 3.8434 -1.1285 -0.2523 33 1 3.8898 0.2472 -1.3809 34 1 7.1236 -1.4383 -1.8967 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578334597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:42 Heat of formation + Delta-G solvation = 32.355659 kcal Electronic energy + Delta-G solvation = -16881.518148 eV Core-core repulsion = 14234.615644 eV Total energy + Delta-G solvation = -2646.902503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.88054 -38.74775 -36.34611 -34.95165 -33.82955 -32.14089 -30.78177 -28.85038 -27.29556 -25.06282 -24.58618 -23.58246 -21.24295 -19.09063 -18.62096 -18.16708 -16.91365 -16.64088 -16.33557 -16.23315 -15.84560 -15.61201 -14.99933 -14.60402 -14.25795 -13.92554 -13.44670 -13.28085 -12.91291 -12.76001 -12.64791 -12.43650 -12.34484 -12.13277 -11.84228 -11.38750 -11.27966 -10.81487 -10.61308 -10.03518 -9.23961 -8.97994 -8.20030 -6.30081 0.14757 0.57630 1.39314 1.41824 1.53911 2.37034 2.41657 2.97582 3.11781 3.20616 3.27020 3.72602 4.04201 4.22758 4.33279 4.41610 4.53515 4.58174 4.72288 4.74125 4.89445 4.96405 5.09022 5.15138 5.27419 5.37656 5.50008 5.65188 6.02664 6.05490 6.26181 6.36358 6.60119 6.86224 6.90933 7.38973 7.50968 8.91417 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.008168 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.202523 B = 3427.111841 C = 4097.656459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.141 3.859 3 H 0.039 0.961 4 C 0.362 3.638 5 N -0.550 5.550 6 C 0.153 3.847 7 C -0.293 4.293 8 C 0.417 3.583 9 N -0.821 5.821 10 N -0.606 5.606 11 N -0.527 5.527 12 C 0.037 3.963 13 C 0.222 3.778 14 C -0.516 4.516 15 H 0.066 0.934 16 C -0.003 4.003 17 N -0.939 5.939 18 Si 0.973 3.027 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.263 1.263 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.190 0.810 26 H 0.177 0.823 27 H 0.425 0.575 28 H 0.410 0.590 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.012 0.988 32 H -0.008 1.008 33 H -0.052 1.052 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.432 0.835 11.075 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.031 3.969 3 H 0.057 0.943 4 C 0.093 3.907 5 N -0.268 5.268 6 C -0.008 4.008 7 C -0.321 4.321 8 C 0.170 3.830 9 N -0.368 5.368 10 N -0.332 5.332 11 N -0.252 5.252 12 C -0.111 4.111 13 C 0.096 3.904 14 C -0.554 4.554 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.580 5.580 18 Si 0.797 3.203 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.187 1.187 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.207 0.793 26 H 0.194 0.806 27 H 0.259 0.741 28 H 0.240 0.760 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.031 0.969 32 H 0.010 0.990 33 H -0.035 1.035 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.753 0.786 10.339 13.570 hybrid contribution 1.730 0.314 0.542 1.840 sum -7.023 1.099 10.882 12.998 Atomic orbital electron populations 1.21723 0.90237 1.03110 1.02929 1.20371 0.97560 0.93033 0.85957 0.94349 1.22626 0.88516 0.87177 0.92406 1.68271 1.22669 1.09277 1.26598 1.23550 0.88541 1.02005 0.86749 1.22416 1.11585 0.93248 1.04823 1.18867 0.87341 0.89685 0.87096 1.42018 1.67089 1.10098 1.17554 1.67649 1.19877 1.42553 1.03100 1.62037 1.10486 1.51583 1.01064 1.22339 1.00753 0.95587 0.92433 1.19206 0.82931 0.92634 0.95626 1.21460 0.91913 1.26648 1.15409 0.91580 1.25989 0.96759 0.97964 0.99316 1.70132 1.01646 1.45231 1.40977 0.85327 0.77558 0.78789 0.78616 1.19512 1.20850 1.18713 0.91520 0.89733 0.91650 0.79294 0.80578 0.74099 0.76029 0.91988 0.89127 0.96924 0.98972 1.03462 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.81 8.87 71.98 0.64 -3.18 16 2 C 0.14 5.84 2.47 44.16 0.11 5.95 16 3 H 0.04 1.66 8.11 -2.38 -0.02 1.65 16 4 C 0.36 15.41 4.88 138.76 0.68 16.09 16 5 N -0.55 -23.04 9.95 -188.11 -1.87 -24.92 16 6 C 0.15 5.07 11.29 84.55 0.95 6.03 16 7 C -0.29 -8.26 10.04 22.58 0.23 -8.04 16 8 C 0.42 13.18 7.82 133.16 1.04 14.22 16 9 N -0.82 -17.32 9.06 -55.09 -0.50 -17.82 16 10 N -0.61 -23.95 10.35 -185.44 -1.92 -25.87 16 11 N -0.53 -24.86 4.44 -906.05 -4.02 -28.88 16 12 C 0.04 1.47 8.92 127.69 1.14 2.61 16 13 C 0.22 12.92 4.54 85.56 0.39 13.31 16 14 C -0.52 -30.97 8.42 25.60 0.22 -30.76 16 15 H 0.07 3.86 7.15 -2.91 -0.02 3.84 16 16 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 17 N -0.94 -59.51 13.29 21.45 0.28 -59.23 16 18 Si 0.97 46.07 29.54 68.60 2.03 48.09 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 22 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 23 H 0.08 2.25 6.44 -2.39 -0.02 2.24 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.19 4.80 8.06 -2.91 -0.02 4.77 16 26 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 27 H 0.43 5.67 8.84 -92.71 -0.82 4.85 16 28 H 0.41 8.06 8.95 -92.71 -0.83 7.23 16 29 H 0.06 2.66 6.70 -2.39 -0.02 2.64 16 30 H 0.09 2.89 6.44 -2.39 -0.02 2.88 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H -0.01 -0.50 6.57 -2.39 -0.02 -0.52 16 33 H -0.05 -3.33 8.12 -2.38 -0.02 -3.35 16 34 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -77.89 286.83 -0.67 -78.56 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -0.53 Total: 13.56 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 5.85 Total: 16.51 kcal Atomic # 7 Polarization: -148.69 SS G_CDS: -8.03 Total: -156.72 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -77.89 -0.67 -78.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578334597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.916 kcal (2) G-P(sol) polarization free energy of solvation -77.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds