Wall clock time and date at job start Sun Mar 29 2020 21:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47029 * 2 1 4 4 C 1.52995 * 109.47074 * 119.99854 * 2 1 3 5 5 H 1.08996 * 115.55398 * 274.32696 * 4 2 1 6 6 C 1.53004 * 117.49787 * 128.61801 * 4 2 1 7 7 C 1.52996 * 60.00011 * 252.51040 * 6 4 2 8 8 H 1.09005 * 117.51530 * 107.48601 * 7 6 4 9 9 N 1.46897 * 117.49833 * 252.50573 * 7 6 4 10 10 C 1.46902 * 111.00151 * 223.62458 * 9 7 6 11 11 C 1.52999 * 109.47028 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47018 * 305.00032 * 11 10 9 13 13 C 1.47205 * 109.47362 * 65.00037 * 11 10 9 14 14 N 6.57287 * 67.48095 * 113.24672 * 2 1 3 15 15 C 1.53006 * 109.47054 * 184.99888 * 11 10 9 16 16 C 1.50698 * 109.47184 * 174.99717 * 15 11 10 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 11 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 11 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 H 1.09004 * 109.47668 * 59.99836 * 1 2 3 25 25 H 1.08997 * 109.47236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46960 * 300.00211 * 1 2 3 27 27 H 1.08995 * 109.46756 * 239.99829 * 2 1 3 28 28 H 1.09004 * 109.47255 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47420 * 299.99901 * 3 2 1 30 30 H 1.08995 * 109.47491 * 60.00279 * 3 2 1 31 31 H 1.09003 * 117.49868 * 145.01839 * 6 4 2 32 32 H 1.08998 * 117.49569 * 0.02562 * 6 4 2 33 33 H 1.00906 * 110.99812 * 99.67519 * 9 7 6 34 34 H 1.08997 * 109.46829 * 60.00184 * 10 9 7 35 35 H 1.09003 * 109.47353 * 300.00251 * 10 9 7 36 36 H 1.08998 * 109.46509 * 55.00315 * 15 11 10 37 37 H 1.08993 * 109.46955 * 294.99875 * 15 11 10 38 38 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1267 -0.1060 2.1448 6 6 3.0741 -1.8314 1.0513 7 6 1.6357 -2.1852 1.4343 8 1 1.0060 -2.6344 0.6663 9 7 1.3946 -2.6542 2.8054 10 6 0.4858 -3.8083 2.8149 11 6 0.2589 -4.2668 4.2568 12 1 1.2202 -4.4667 4.7300 13 6 -0.4450 -3.2107 5.0026 14 7 -0.9873 -2.3964 5.5788 15 6 -0.5860 -5.5425 4.2593 16 6 -0.7065 -6.0624 5.6686 17 1 -0.2287 -5.5354 6.4813 18 6 -1.4276 -7.2102 5.9207 19 7 -2.0099 -7.8516 4.9312 20 14 -1.5777 -7.8542 7.6677 21 1 -2.3976 -9.0924 7.6701 22 1 -2.2290 -6.8270 8.5197 23 1 -0.2253 -8.1555 8.2021 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.8416 -1.9466 1.8167 32 1 3.3913 -2.0476 0.0312 33 1 1.0388 -1.9089 3.3851 34 1 0.9264 -4.6224 2.2394 35 1 -0.4678 -3.5236 2.3702 36 1 -0.1077 -6.2961 3.6337 37 1 -1.5787 -5.3215 3.8674 38 1 -1.9323 -7.5170 4.0240 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579217194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:10 Heat of formation + Delta-G solvation = 16.778333 kcal Electronic energy + Delta-G solvation = -16125.224058 eV Core-core repulsion = 13581.186414 eV Total energy + Delta-G solvation = -2544.037643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.88281 -37.07389 -34.85009 -33.91759 -32.67332 -30.46468 -27.37200 -25.94472 -23.11968 -22.92978 -22.15848 -21.07088 -19.96092 -17.13984 -16.66492 -16.04493 -15.54644 -14.73151 -14.26813 -13.77755 -13.57468 -13.36448 -13.34083 -13.15740 -12.64829 -12.40631 -12.34355 -12.13047 -11.80513 -11.48257 -11.42158 -11.28152 -11.01939 -10.87762 -10.82687 -10.54408 -10.34755 -10.16654 -10.06461 -9.80108 -8.67458 -8.41343 -8.25254 -6.43761 -4.14891 3.42757 3.45042 3.47817 3.52261 3.63349 3.71445 3.98831 4.50499 4.55733 4.68748 4.72074 4.90130 4.99310 5.15013 5.25865 5.34782 5.39539 5.43078 5.46090 5.57232 5.62508 5.66078 5.71962 5.84149 5.86933 6.03450 6.04453 6.09180 6.22980 6.26429 6.38274 7.06870 7.09748 7.23882 7.33866 8.02615 8.27643 8.38726 8.78729 9.56226 10.97062 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045800 B = 0.004204 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.201392 B = 6658.958928 C = 6777.556224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.161 4.161 5 H 0.104 0.896 6 C -0.163 4.163 7 C 0.024 3.976 8 H 0.100 0.900 9 N -0.661 5.661 10 C 0.069 3.931 11 C 0.014 3.986 12 H 0.112 0.888 13 C 0.240 3.760 14 N -0.472 5.472 15 C 0.019 3.981 16 C -0.607 4.607 17 H 0.051 0.949 18 C 0.020 3.980 19 N -0.908 5.908 20 Si 1.066 2.934 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.286 1.286 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.340 0.660 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.031 0.969 37 H 0.015 0.985 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.676 12.684 -11.293 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.201 4.201 4 C -0.180 4.180 5 H 0.122 0.878 6 C -0.201 4.201 7 C -0.086 4.086 8 H 0.118 0.882 9 N -0.291 5.291 10 C -0.061 4.061 11 C -0.008 4.008 12 H 0.130 0.870 13 C -0.077 4.077 14 N -0.149 5.149 15 C -0.019 4.019 16 C -0.645 4.645 17 H 0.069 0.931 18 C -0.184 4.184 19 N -0.544 5.544 20 Si 0.894 3.106 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.212 1.212 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.159 0.841 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.033 0.967 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.750 12.304 -9.467 17.352 hybrid contribution 0.037 1.319 -1.214 1.793 sum 7.787 13.623 -10.681 18.982 Atomic orbital electron populations 1.21836 0.95099 1.01905 1.01624 1.20701 0.95548 0.95942 0.96202 1.21797 1.01042 0.95630 1.01611 1.22786 1.04617 0.90918 0.99721 0.87833 1.23278 0.93202 1.01621 1.02048 1.22444 0.98346 0.96141 0.91682 0.88214 1.60317 1.50123 1.10079 1.08603 1.22131 0.94247 0.93454 0.96246 1.19164 0.99488 0.90901 0.91292 0.86994 1.29216 0.92711 0.92713 0.93042 1.81013 1.10593 1.13406 1.09871 1.19274 0.94122 0.89533 0.99017 1.21970 1.37091 1.12820 0.92583 0.93092 1.25795 0.93000 0.93971 1.05633 1.70807 1.41696 1.40848 1.01063 0.83575 0.76573 0.76343 0.74110 1.20673 1.21485 1.21206 0.92786 0.92655 0.92666 0.91221 0.92591 0.92811 0.92705 0.88350 0.89028 0.84065 0.88988 0.94617 0.95110 0.96675 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.03 37.16 0.34 -1.01 16 2 C -0.07 -0.57 3.07 -90.62 -0.28 -0.85 16 3 C -0.14 -1.13 9.17 37.16 0.34 -0.78 16 4 C -0.16 -1.63 4.95 -90.62 -0.45 -2.08 16 5 H 0.10 1.11 8.11 -51.93 -0.42 0.69 16 6 C -0.16 -1.67 10.10 -26.73 -0.27 -1.94 16 7 C 0.02 0.28 5.46 -67.72 -0.37 -0.09 16 8 H 0.10 1.12 7.36 -51.93 -0.38 0.74 16 9 N -0.66 -9.00 6.74 -106.73 -0.72 -9.72 16 10 C 0.07 1.04 4.97 -3.82 -0.02 1.02 16 11 C 0.01 0.25 2.42 -93.40 -0.23 0.03 16 12 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 13 C 0.24 4.93 12.97 -20.78 -0.27 4.66 16 14 N -0.47 -10.41 18.53 42.13 0.78 -9.63 16 15 C 0.02 0.44 3.74 -27.88 -0.10 0.34 16 16 C -0.61 -16.44 8.60 -34.44 -0.30 -16.74 16 17 H 0.05 1.39 7.59 -52.48 -0.40 0.99 16 18 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 19 N -0.91 -26.83 13.65 55.43 0.76 -26.07 16 20 Si 1.07 25.10 29.90 -169.99 -5.08 20.02 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 33 H 0.34 4.82 7.76 -39.29 -0.30 4.52 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.71 8.01 -51.93 -0.42 0.29 16 37 H 0.01 0.37 8.01 -51.93 -0.42 -0.05 16 38 H 0.27 7.77 7.22 -40.82 -0.29 7.48 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -29.64 320.68 -7.58 -37.22 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.44 Total: 0.31 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -1.70 Total: -16.96 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.82 Total: -45.42 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.64 -7.58 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579217194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.998 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds