Wall clock time and date at job start Sun Mar 29 2020 21:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47029 * 2 1 4 4 C 1.52995 * 109.47074 * 119.99854 * 2 1 3 5 5 H 1.08996 * 115.55398 * 274.32696 * 4 2 1 6 6 C 1.53004 * 117.49787 * 128.61801 * 4 2 1 7 7 C 1.52996 * 60.00011 * 252.51040 * 6 4 2 8 8 H 1.09005 * 117.51530 * 107.48601 * 7 6 4 9 9 N 1.46897 * 117.49833 * 252.50573 * 7 6 4 10 10 C 1.46902 * 111.00151 * 223.62458 * 9 7 6 11 11 C 1.52999 * 109.47028 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47018 * 305.00032 * 11 10 9 13 13 C 1.47205 * 109.47362 * 65.00037 * 11 10 9 14 14 N 6.57287 * 67.48095 * 113.24672 * 2 1 3 15 15 C 1.53006 * 109.47054 * 184.99888 * 11 10 9 16 16 C 1.50698 * 109.47184 * 174.99717 * 15 11 10 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 11 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 11 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 H 1.09004 * 109.47668 * 59.99836 * 1 2 3 25 25 H 1.08997 * 109.47236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46960 * 300.00211 * 1 2 3 27 27 H 1.08995 * 109.46756 * 239.99829 * 2 1 3 28 28 H 1.09004 * 109.47255 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47420 * 299.99901 * 3 2 1 30 30 H 1.08995 * 109.47491 * 60.00279 * 3 2 1 31 31 H 1.09003 * 117.49868 * 145.01839 * 6 4 2 32 32 H 1.08998 * 117.49569 * 0.02562 * 6 4 2 33 33 H 1.00906 * 110.99812 * 99.67519 * 9 7 6 34 34 H 1.08997 * 109.46829 * 60.00184 * 10 9 7 35 35 H 1.09003 * 109.47353 * 300.00251 * 10 9 7 36 36 H 1.08998 * 109.46509 * 55.00315 * 15 11 10 37 37 H 1.08993 * 109.46955 * 294.99875 * 15 11 10 38 38 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1267 -0.1060 2.1448 6 6 3.0741 -1.8314 1.0513 7 6 1.6357 -2.1852 1.4343 8 1 1.0060 -2.6344 0.6663 9 7 1.3946 -2.6542 2.8054 10 6 0.4858 -3.8083 2.8149 11 6 0.2589 -4.2668 4.2568 12 1 1.2202 -4.4667 4.7300 13 6 -0.4450 -3.2107 5.0026 14 7 -0.9873 -2.3964 5.5788 15 6 -0.5860 -5.5425 4.2593 16 6 -0.7065 -6.0624 5.6686 17 1 -0.2287 -5.5354 6.4813 18 6 -1.4276 -7.2102 5.9207 19 7 -2.0099 -7.8516 4.9312 20 14 -1.5777 -7.8542 7.6677 21 1 -2.3976 -9.0924 7.6701 22 1 -2.2290 -6.8270 8.5197 23 1 -0.2253 -8.1555 8.2021 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.8416 -1.9466 1.8167 32 1 3.3913 -2.0476 0.0312 33 1 1.0388 -1.9089 3.3851 34 1 0.9264 -4.6224 2.2394 35 1 -0.4678 -3.5236 2.3702 36 1 -0.1077 -6.2961 3.6337 37 1 -1.5787 -5.3215 3.8674 38 1 -1.9323 -7.5170 4.0240 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579217194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:10 Heat of formation + Delta-G solvation = -0.066924 kcal Electronic energy + Delta-G solvation = -16125.954523 eV Core-core repulsion = 13581.186414 eV Total energy + Delta-G solvation = -2544.768109 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.82652 -38.54444 -36.23331 -35.54781 -33.99838 -31.91510 -28.05565 -27.70282 -24.62201 -23.89465 -23.77664 -22.02275 -20.73883 -19.07626 -18.32175 -17.06683 -16.56179 -15.80412 -15.63611 -15.49532 -14.91576 -14.78639 -14.53627 -14.08024 -13.97132 -13.85932 -13.39028 -13.31061 -13.20081 -13.05707 -12.68619 -12.41006 -12.23982 -12.14396 -12.01048 -11.97187 -11.76648 -11.57901 -11.32521 -10.83964 -10.62726 -10.53495 -9.28961 -8.64758 -6.35887 1.53747 1.59877 1.78983 1.82346 1.84210 2.55829 2.85539 2.96495 3.09269 3.20459 3.77499 3.96965 4.04348 4.09760 4.17200 4.32260 4.37632 4.46272 4.53422 4.66709 4.73860 4.79250 4.81480 4.89758 4.98740 5.03882 5.07337 5.19227 5.20198 5.32271 5.37870 5.39191 5.51023 5.91526 6.05501 6.19529 6.21460 6.61260 6.65068 7.41847 8.77437 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045800 B = 0.004204 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.201392 B = 6658.958928 C = 6777.556224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.153 4.153 5 H 0.096 0.904 6 C -0.154 4.154 7 C 0.008 3.992 8 H 0.104 0.896 9 N -0.662 5.662 10 C 0.082 3.918 11 C 0.025 3.975 12 H 0.121 0.879 13 C 0.249 3.751 14 N -0.499 5.499 15 C 0.022 3.978 16 C -0.617 4.617 17 H 0.046 0.954 18 C -0.030 4.030 19 N -0.935 5.935 20 Si 1.106 2.894 21 H -0.282 1.282 22 H -0.283 1.283 23 H -0.264 1.264 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.335 0.665 34 H 0.105 0.895 35 H 0.035 0.965 36 H 0.033 0.967 37 H -0.003 1.003 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.802 13.259 -11.849 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.199 4.199 4 C -0.173 4.173 5 H 0.114 0.886 6 C -0.192 4.192 7 C -0.102 4.102 8 H 0.122 0.878 9 N -0.292 5.292 10 C -0.048 4.048 11 C 0.003 3.997 12 H 0.139 0.861 13 C -0.067 4.067 14 N -0.176 5.176 15 C -0.017 4.017 16 C -0.655 4.655 17 H 0.064 0.936 18 C -0.229 4.229 19 N -0.572 5.572 20 Si 0.929 3.071 21 H -0.208 1.208 22 H -0.209 1.209 23 H -0.189 1.189 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.015 0.985 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.899 12.897 -10.039 18.609 hybrid contribution -0.300 1.184 -1.071 1.625 sum 8.599 14.081 -11.110 19.891 Atomic orbital electron populations 1.21835 0.95473 1.01421 1.01718 1.20713 0.95170 0.96491 0.95768 1.21782 1.01310 0.94938 1.01875 1.22802 1.04151 0.90251 1.00070 0.88587 1.23320 0.92230 1.00881 1.02761 1.22524 0.99653 0.97510 0.90529 0.87786 1.60310 1.49291 1.09594 1.10022 1.21956 0.94829 0.94546 0.93508 1.19084 0.98487 0.88508 0.93615 0.86111 1.29570 0.92178 0.92542 0.92441 1.81011 1.11316 1.14412 1.10872 1.19143 0.94024 0.91554 0.96932 1.22377 1.36235 1.12575 0.94300 0.93603 1.27077 0.92740 0.94710 1.08353 1.70911 1.43399 1.41755 1.01158 0.83055 0.77651 0.75900 0.70541 1.20754 1.20881 1.18931 0.91622 0.93416 0.93669 0.90333 0.92154 0.91805 0.93227 0.88878 0.87365 0.84643 0.87679 0.94704 0.94857 0.98456 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.03 71.98 0.65 -1.84 16 2 C -0.06 -0.98 3.07 -10.80 -0.03 -1.01 16 3 C -0.14 -1.94 9.17 71.98 0.66 -1.28 16 4 C -0.15 -2.85 4.95 -10.79 -0.05 -2.90 16 5 H 0.10 1.95 8.11 -2.39 -0.02 1.93 16 6 C -0.15 -2.81 10.10 30.59 0.31 -2.50 16 7 C 0.01 0.17 5.46 44.91 0.25 0.41 16 8 H 0.10 2.16 7.36 -2.38 -0.02 2.14 16 9 N -0.66 -17.15 6.74 -491.57 -3.31 -20.46 16 10 C 0.08 2.35 4.97 86.30 0.43 2.78 16 11 C 0.02 0.91 2.42 -12.60 -0.03 0.88 16 12 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 13 C 0.25 10.11 12.97 89.45 1.16 11.27 16 14 N -0.50 -21.84 18.53 20.00 0.37 -21.47 16 15 C 0.02 1.03 3.74 29.85 0.11 1.14 16 16 C -0.62 -33.27 8.60 25.60 0.22 -33.05 16 17 H 0.05 2.47 7.59 -2.91 -0.02 2.45 16 18 C -0.03 -1.68 5.46 84.65 0.46 -1.21 16 19 N -0.93 -55.50 13.65 21.45 0.29 -55.21 16 20 Si 1.11 49.97 29.90 68.60 2.05 52.02 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.05 0.87 7.29 -2.39 -0.02 0.85 16 26 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.08 1.11 7.90 -2.39 -0.02 1.10 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 1.62 8.05 -2.39 -0.02 1.60 16 33 H 0.33 9.19 7.76 -89.69 -0.70 8.50 16 34 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.03 1.52 8.01 -2.39 -0.02 1.50 16 37 H 0.00 -0.14 8.01 -2.39 -0.02 -0.16 16 38 H 0.26 15.33 7.22 -92.71 -0.67 14.66 16 Total: -1.00 -62.09 320.68 3.96 -58.13 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.43 Total: 14.32 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 4.13 Total: -27.33 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -2.65 Total: -97.14 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Total: -62.09 3.96 -58.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579217194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.059 kcal (2) G-P(sol) polarization free energy of solvation -62.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds