Wall clock time and date at job start Sun Mar 29 2020 21:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 115.56639 * 2 1 4 4 C 1.53080 * 117.49235 * 214.29372 * 2 1 3 5 5 C 1.52998 * 117.50175 * 145.69336 * 2 1 3 6 6 H 1.09004 * 117.49605 * 359.97301 * 5 2 1 7 7 C 1.53001 * 117.50078 * 214.97655 * 5 2 1 8 8 N 1.46905 * 109.47005 * 175.08358 * 7 5 2 9 9 C 1.46900 * 110.99729 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47048 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.47304 * 305.00197 * 10 9 8 12 12 C 1.47202 * 109.46954 * 65.00026 * 10 9 8 13 13 N 7.07088 * 132.19818 * 156.72466 * 2 1 3 14 14 C 1.52992 * 109.47321 * 185.00056 * 10 9 8 15 15 C 1.50700 * 109.47257 * 174.99983 * 14 10 9 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 10 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 10 18 18 N 1.31518 * 119.99792 * 359.72305 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47163 * 59.99902 * 19 17 15 21 21 H 1.48495 * 109.47159 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47290 * 299.99897 * 19 17 15 23 23 H 1.09006 * 109.46579 * 274.31362 * 1 2 3 24 24 H 1.09002 * 109.46787 * 34.30516 * 1 2 3 25 25 H 1.08991 * 109.47066 * 154.30816 * 1 2 3 26 26 H 1.08998 * 109.47753 * 205.69175 * 3 2 1 27 27 H 1.09004 * 109.46954 * 325.69200 * 3 2 1 28 28 H 1.09006 * 109.46966 * 85.69026 * 3 2 1 29 29 H 1.09001 * 117.51052 * 145.03716 * 4 2 1 30 30 H 1.08993 * 117.51283 * 359.97438 * 4 2 1 31 31 H 1.09000 * 109.46877 * 55.08829 * 7 5 2 32 32 H 1.08993 * 109.47236 * 295.08669 * 7 5 2 33 33 H 1.00897 * 110.99986 * 303.95585 * 8 7 5 34 34 H 1.08998 * 109.47037 * 60.00453 * 9 8 7 35 35 H 1.08997 * 109.47380 * 300.00214 * 9 8 7 36 36 H 1.09004 * 109.47330 * 55.00006 * 14 10 9 37 37 H 1.08997 * 109.47279 * 295.00493 * 14 10 9 38 38 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2366 -1.1219 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6112 -1.8583 1.2685 7 6 3.5490 -0.7760 1.4713 8 7 4.0109 -1.9386 2.2415 9 6 5.2722 -1.6436 2.9344 10 6 5.7207 -2.8754 3.7234 11 1 4.9200 -3.1894 4.3931 12 6 6.0360 -3.9685 2.7892 13 7 6.2794 -4.8120 2.0699 14 6 6.9655 -2.5304 4.5433 15 6 7.3352 -3.7042 5.4132 16 1 6.7415 -4.6058 5.3844 17 6 8.4309 -3.6265 6.2466 18 7 9.1566 -2.5301 6.2784 19 14 8.8897 -5.0816 7.3243 20 1 9.1728 -6.2617 6.4685 21 1 10.0977 -4.7467 8.1203 22 1 7.7634 -5.3935 8.2407 23 1 -0.3633 0.0773 1.0248 24 1 -0.3633 0.8489 -0.5792 25 1 -0.3633 -0.9260 -0.4455 26 1 3.1824 1.3084 -0.4455 27 1 1.5812 2.0743 -0.5793 28 1 2.2774 1.7413 1.0248 29 1 3.1718 -0.8766 -1.2684 30 1 1.6115 -1.8598 -1.2678 31 1 3.3887 0.0657 2.1450 32 1 4.3017 -0.5093 0.7294 33 1 3.3035 -2.2453 2.8923 34 1 5.1242 -0.8078 3.6182 35 1 6.0366 -1.3833 2.2024 36 1 6.7583 -1.6638 5.1712 37 1 7.7920 -2.3022 3.8705 38 1 9.9272 -2.4754 6.8650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580185850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:05 Heat of formation + Delta-G solvation = 23.837903 kcal Electronic energy + Delta-G solvation = -15967.518262 eV Core-core repulsion = 13423.786745 eV Total energy + Delta-G solvation = -2543.731518 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98820 -37.09544 -34.92984 -33.45200 -31.60264 -29.50447 -27.91089 -27.03299 -24.88248 -22.45425 -21.80036 -21.08117 -18.83510 -16.99191 -16.39691 -15.50868 -14.99298 -14.92551 -14.55332 -14.04532 -13.79810 -13.61623 -12.86697 -12.83657 -12.54288 -12.40724 -12.25262 -12.06477 -11.95033 -11.64975 -11.49240 -11.22884 -11.08816 -11.02318 -10.66690 -10.54835 -10.22651 -9.96052 -9.73857 -9.47378 -9.21756 -8.44989 -8.24157 -6.09012 -4.12187 3.31665 3.35925 3.39738 3.54091 3.77607 3.87218 4.21061 4.42188 4.55840 4.70028 4.78320 4.90780 4.98223 5.29028 5.31555 5.36030 5.41120 5.51554 5.60461 5.68667 5.71906 5.74069 5.76779 5.80050 5.80714 5.93546 6.04140 6.12187 6.22104 6.40971 6.51359 7.13839 7.42709 7.51364 7.54991 7.86190 8.23880 8.61590 8.92418 9.53164 11.01894 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.047814 B = 0.003959 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.463423 B = 7069.976231 C = 7322.470399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.133 4.133 3 C -0.115 4.115 4 C -0.166 4.166 5 C -0.137 4.137 6 H 0.105 0.895 7 C 0.092 3.908 8 N -0.692 5.692 9 C 0.067 3.933 10 C 0.009 3.991 11 H 0.099 0.901 12 C 0.256 3.744 13 N -0.479 5.479 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.341 0.659 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.334 8.645 -9.101 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.134 4.134 3 C -0.172 4.172 4 C -0.203 4.203 5 C -0.155 4.155 6 H 0.123 0.877 7 C -0.037 4.037 8 N -0.323 5.323 9 C -0.063 4.063 10 C -0.013 4.013 11 H 0.117 0.883 12 C -0.061 4.061 13 N -0.156 5.156 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.158 0.842 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.489 7.161 -10.646 19.353 hybrid contribution -0.008 0.041 1.639 1.640 sum -14.496 7.201 -9.007 18.524 Atomic orbital electron populations 1.21338 0.92222 1.01771 1.01743 1.21644 0.94597 0.91562 1.05576 1.21335 1.00017 0.94025 1.01849 1.23275 1.02142 1.00564 0.94338 1.22405 0.98288 1.00676 0.94135 0.87707 1.21461 0.94245 0.91438 0.96602 1.60479 1.06319 1.34780 1.30745 1.22062 0.91403 0.96234 0.96634 1.19214 1.02468 0.87454 0.92133 0.88335 1.28805 0.91398 0.93508 0.92407 1.80933 1.10844 1.11659 1.12190 1.19163 0.89623 0.97863 0.94053 1.21116 1.12257 1.00071 1.23072 0.92535 1.24957 0.96085 0.95918 0.97018 1.69932 1.17752 1.26705 1.38694 0.86645 0.77948 0.82947 0.80489 1.20205 1.21198 1.20053 0.92316 0.92300 0.92566 0.92356 0.92380 0.92181 0.88865 0.89122 0.94783 0.91053 0.84155 0.93309 0.90589 0.94470 0.95556 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.85 37.15 0.37 -0.51 16 2 C -0.13 -1.20 2.70 -154.47 -0.42 -1.61 16 3 C -0.12 -0.95 8.86 37.16 0.33 -0.62 16 4 C -0.17 -1.65 9.47 -26.69 -0.25 -1.91 16 5 C -0.14 -1.41 5.67 -90.62 -0.51 -1.93 16 6 H 0.10 1.10 8.13 -51.93 -0.42 0.67 16 7 C 0.09 1.04 5.05 -3.82 -0.02 1.02 16 8 N -0.69 -9.22 6.20 -113.78 -0.71 -9.92 16 9 C 0.07 1.00 5.05 -3.82 -0.02 0.98 16 10 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 11 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 12 C 0.26 5.45 13.67 -20.79 -0.28 5.17 16 13 N -0.48 -11.14 18.53 42.11 0.78 -10.36 16 14 C 0.03 0.74 4.42 -27.89 -0.12 0.61 16 15 C -0.53 -14.12 8.60 -34.44 -0.30 -14.42 16 16 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 25 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 26 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 27 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 28 H 0.06 0.49 7.84 -51.93 -0.41 0.08 16 29 H 0.09 0.94 7.94 -51.93 -0.41 0.53 16 30 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 31 H 0.03 0.37 7.77 -51.93 -0.40 -0.04 16 32 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 33 H 0.34 4.08 8.72 -39.29 -0.34 3.74 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -29.99 322.75 -7.42 -37.41 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.53 Total: -1.81 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.55 Total: -11.64 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.81 Total: -45.20 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.99 -7.42 -37.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580185850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.247 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds