Wall clock time and date at job start Sun Mar 29 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 115.56639 * 2 1 4 4 C 1.53080 * 117.49235 * 214.29372 * 2 1 3 5 5 C 1.52998 * 117.50175 * 145.69336 * 2 1 3 6 6 H 1.09004 * 117.49605 * 359.97301 * 5 2 1 7 7 C 1.53001 * 117.50078 * 214.97655 * 5 2 1 8 8 N 1.46905 * 109.47005 * 175.08358 * 7 5 2 9 9 C 1.46900 * 110.99729 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47048 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.47304 * 305.00197 * 10 9 8 12 12 C 1.47202 * 109.46954 * 65.00026 * 10 9 8 13 13 N 7.07088 * 132.19818 * 156.72466 * 2 1 3 14 14 C 1.52992 * 109.47321 * 185.00056 * 10 9 8 15 15 C 1.50700 * 109.47257 * 174.99983 * 14 10 9 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 10 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 10 18 18 N 1.31518 * 119.99792 * 359.72305 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47163 * 59.99902 * 19 17 15 21 21 H 1.48495 * 109.47159 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47290 * 299.99897 * 19 17 15 23 23 H 1.09006 * 109.46579 * 274.31362 * 1 2 3 24 24 H 1.09002 * 109.46787 * 34.30516 * 1 2 3 25 25 H 1.08991 * 109.47066 * 154.30816 * 1 2 3 26 26 H 1.08998 * 109.47753 * 205.69175 * 3 2 1 27 27 H 1.09004 * 109.46954 * 325.69200 * 3 2 1 28 28 H 1.09006 * 109.46966 * 85.69026 * 3 2 1 29 29 H 1.09001 * 117.51052 * 145.03716 * 4 2 1 30 30 H 1.08993 * 117.51283 * 359.97438 * 4 2 1 31 31 H 1.09000 * 109.46877 * 55.08829 * 7 5 2 32 32 H 1.08993 * 109.47236 * 295.08669 * 7 5 2 33 33 H 1.00897 * 110.99986 * 303.95585 * 8 7 5 34 34 H 1.08998 * 109.47037 * 60.00453 * 9 8 7 35 35 H 1.08997 * 109.47380 * 300.00214 * 9 8 7 36 36 H 1.09004 * 109.47330 * 55.00006 * 14 10 9 37 37 H 1.08997 * 109.47279 * 295.00493 * 14 10 9 38 38 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2366 -1.1219 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6112 -1.8583 1.2685 7 6 3.5490 -0.7760 1.4713 8 7 4.0109 -1.9386 2.2415 9 6 5.2722 -1.6436 2.9344 10 6 5.7207 -2.8754 3.7234 11 1 4.9200 -3.1894 4.3931 12 6 6.0360 -3.9685 2.7892 13 7 6.2794 -4.8120 2.0699 14 6 6.9655 -2.5304 4.5433 15 6 7.3352 -3.7042 5.4132 16 1 6.7415 -4.6058 5.3844 17 6 8.4309 -3.6265 6.2466 18 7 9.1566 -2.5301 6.2784 19 14 8.8897 -5.0816 7.3243 20 1 9.1728 -6.2617 6.4685 21 1 10.0977 -4.7467 8.1203 22 1 7.7634 -5.3935 8.2407 23 1 -0.3633 0.0773 1.0248 24 1 -0.3633 0.8489 -0.5792 25 1 -0.3633 -0.9260 -0.4455 26 1 3.1824 1.3084 -0.4455 27 1 1.5812 2.0743 -0.5793 28 1 2.2774 1.7413 1.0248 29 1 3.1718 -0.8766 -1.2684 30 1 1.6115 -1.8598 -1.2678 31 1 3.3887 0.0657 2.1450 32 1 4.3017 -0.5093 0.7294 33 1 3.3035 -2.2453 2.8923 34 1 5.1242 -0.8078 3.6182 35 1 6.0366 -1.3833 2.2024 36 1 6.7583 -1.6638 5.1712 37 1 7.7920 -2.3022 3.8705 38 1 9.9272 -2.4754 6.8650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580185850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:04 Heat of formation + Delta-G solvation = 6.598730 kcal Electronic energy + Delta-G solvation = -15968.265809 eV Core-core repulsion = 13423.786745 eV Total energy + Delta-G solvation = -2544.479064 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79640 -38.56106 -36.35399 -35.30842 -33.27179 -30.38498 -28.79436 -28.28981 -26.21779 -23.86320 -23.47693 -21.94250 -19.59962 -18.54844 -18.33024 -16.69479 -16.26683 -16.11571 -15.84818 -15.11459 -15.01702 -14.66806 -14.32041 -14.04696 -13.81185 -13.62769 -13.38856 -13.26815 -13.11320 -12.99574 -12.79308 -12.70153 -12.46158 -12.39888 -12.20239 -11.91192 -11.84275 -11.40911 -11.16642 -10.73153 -10.54804 -10.36597 -9.27278 -8.19294 -6.27666 1.41272 1.43366 1.50256 2.07749 2.14728 2.41840 2.76634 3.15924 3.24030 3.36828 3.80724 3.94024 4.03306 4.20138 4.25099 4.36569 4.51303 4.62210 4.73969 4.81126 4.82603 4.87173 4.91210 4.97743 5.01148 5.09267 5.11355 5.13402 5.32217 5.35930 5.46789 5.52490 5.62194 5.79248 6.05509 6.22157 6.55178 6.83296 6.93701 7.40888 8.91494 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.047814 B = 0.003959 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.463423 B = 7069.976231 C = 7322.470399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.176 4.176 5 C -0.146 4.146 6 H 0.104 0.896 7 C 0.096 3.904 8 N -0.701 5.701 9 C 0.079 3.921 10 C 0.020 3.980 11 H 0.121 0.879 12 C 0.266 3.734 13 N -0.516 5.516 14 C 0.037 3.963 15 C -0.541 4.541 16 H 0.055 0.945 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.949 3.051 20 H -0.282 1.282 21 H -0.282 1.282 22 H -0.262 1.262 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.350 0.650 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.036 0.964 37 H -0.001 1.001 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 9.028 -8.816 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.174 4.174 4 C -0.213 4.213 5 C -0.164 4.164 6 H 0.123 0.877 7 C -0.032 4.032 8 N -0.333 5.333 9 C -0.051 4.051 10 C -0.002 4.002 11 H 0.139 0.861 12 C -0.050 4.050 13 N -0.194 5.194 14 C -0.001 4.001 15 C -0.579 4.579 16 H 0.073 0.927 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.775 3.225 20 H -0.208 1.208 21 H -0.207 1.207 22 H -0.186 1.186 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.169 0.831 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.970 7.545 -10.362 20.477 hybrid contribution 0.433 -0.064 1.518 1.580 sum -15.536 7.482 -8.843 19.379 Atomic orbital electron populations 1.21365 0.91146 1.02327 1.02250 1.21749 0.95363 0.91409 1.03728 1.21369 0.99991 0.93819 1.02201 1.23318 1.02313 1.01517 0.94136 1.22373 0.98073 1.01802 0.94175 0.87749 1.21429 0.94464 0.90992 0.96359 1.60405 1.06023 1.35969 1.30942 1.21851 0.92085 0.94716 0.96471 1.19193 1.00940 0.88138 0.91921 0.86118 1.29343 0.90432 0.93261 0.91970 1.80931 1.11849 1.12987 1.13598 1.18990 0.90803 0.96731 0.93605 1.21544 1.12127 1.00957 1.23254 0.92718 1.25726 0.96327 0.98247 0.98505 1.70029 1.18305 1.28391 1.39652 0.85741 0.78136 0.79653 0.79008 1.20755 1.20729 1.18624 0.91896 0.91245 0.92490 0.92788 0.91206 0.91929 0.89430 0.88845 0.93703 0.91870 0.83097 0.91427 0.91510 0.94536 0.98209 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.85 71.98 0.71 -0.80 16 2 C -0.12 -1.97 2.70 -52.16 -0.14 -2.11 16 3 C -0.12 -1.70 8.86 71.98 0.64 -1.06 16 4 C -0.18 -3.31 9.47 30.62 0.29 -3.02 16 5 C -0.15 -2.79 5.67 -10.79 -0.06 -2.85 16 6 H 0.10 2.01 8.13 -2.38 -0.02 1.99 16 7 C 0.10 2.03 5.05 86.30 0.44 2.47 16 8 N -0.70 -17.45 6.20 -513.88 -3.19 -20.64 16 9 C 0.08 2.24 5.05 86.30 0.44 2.67 16 10 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 11 H 0.12 3.84 8.14 -2.38 -0.02 3.82 16 12 C 0.27 11.17 13.67 89.45 1.22 12.40 16 13 N -0.52 -23.87 18.53 19.99 0.37 -23.50 16 14 C 0.04 1.73 4.42 29.85 0.13 1.87 16 15 C -0.54 -28.75 8.60 25.60 0.22 -28.53 16 16 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 17 C 0.01 0.60 5.46 84.66 0.46 1.06 16 18 N -0.92 -53.25 13.29 21.45 0.28 -52.96 16 19 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.07 0.78 7.92 -2.39 -0.02 0.76 16 25 H 0.06 0.75 7.90 -2.39 -0.02 0.73 16 26 H 0.05 0.83 7.90 -2.39 -0.02 0.81 16 27 H 0.07 0.85 7.92 -2.38 -0.02 0.83 16 28 H 0.06 0.89 7.84 -2.38 -0.02 0.87 16 29 H 0.09 1.73 7.94 -2.39 -0.02 1.71 16 30 H 0.09 1.67 8.05 -2.39 -0.02 1.65 16 31 H 0.04 0.86 7.77 -2.39 -0.02 0.84 16 32 H 0.06 1.44 7.87 -2.39 -0.02 1.42 16 33 H 0.35 7.60 8.72 -89.70 -0.78 6.82 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -62.86 322.75 4.05 -58.81 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.24 Total: 9.97 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.31 Total: -17.23 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -2.53 Total: -97.10 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -62.86 4.05 -58.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580185850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.411 kcal (2) G-P(sol) polarization free energy of solvation -62.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds