Wall clock time and date at job start Sun Mar 29 2020 22:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46942 * 2 1 4 4 C 1.53002 * 109.47211 * 119.99859 * 2 1 3 5 5 C 1.50701 * 109.47171 * 183.54484 * 4 2 1 6 6 H 1.07995 * 120.00120 * 5.07066 * 5 4 2 7 7 C 1.37878 * 119.99728 * 185.06676 * 5 4 2 8 8 N 1.31516 * 119.99648 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00166 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46887 * 90.00161 * 9 7 5 11 11 H 1.48497 * 109.46948 * 209.99854 * 9 7 5 12 12 H 1.48496 * 109.47167 * 329.99894 * 9 7 5 13 13 N 1.46898 * 109.47322 * 239.99806 * 2 1 3 14 14 C 1.46851 * 110.99703 * 72.95207 * 13 2 1 15 15 C 1.53043 * 109.52114 * 174.15895 * 14 13 2 16 16 C 1.53116 * 109.27481 * 59.18396 * 15 14 13 17 17 C 1.53115 * 109.16277 * 302.34220 * 16 15 14 18 18 C 1.53003 * 109.50576 * 177.59811 * 17 16 15 19 19 C 1.47200 * 109.50176 * 297.71779 * 17 16 15 20 20 N 4.79861 * 129.28058 * 213.54268 * 2 1 3 21 21 C 1.46847 * 111.00291 * 308.74537 * 13 2 1 22 22 H 1.08996 * 109.47329 * 299.99966 * 1 2 3 23 23 H 1.09003 * 109.47160 * 60.00044 * 1 2 3 24 24 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47051 * 303.55175 * 4 2 1 26 26 H 1.09000 * 109.47042 * 63.54808 * 4 2 1 27 27 H 0.96998 * 119.99504 * 180.02562 * 8 7 5 28 28 H 1.08991 * 109.46417 * 294.17883 * 14 13 2 29 29 H 1.09003 * 109.46231 * 54.14939 * 14 13 2 30 30 H 1.08993 * 109.50272 * 299.24011 * 15 14 13 31 31 H 1.08998 * 109.50271 * 179.12158 * 15 14 13 32 32 H 1.08999 * 109.51904 * 182.43800 * 16 15 14 33 33 H 1.08996 * 109.57626 * 62.28121 * 16 15 14 34 34 H 1.08998 * 109.47031 * 300.19523 * 18 17 16 35 35 H 1.08995 * 109.46723 * 60.19652 * 18 17 16 36 36 H 1.08999 * 109.46778 * 180.19895 * 18 17 16 37 37 H 1.08994 * 109.46139 * 305.85776 * 21 13 2 38 38 H 1.09004 * 109.46004 * 65.82038 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5445 -0.6456 1.2940 6 1 4.0782 -0.0656 0.5557 7 6 4.2395 -1.3169 2.2775 8 7 5.5524 -1.2504 2.3168 9 14 3.3164 -2.3206 3.5542 10 1 3.1536 -3.7134 3.0656 11 1 4.0827 -2.3286 4.8261 12 1 1.9793 -1.7177 3.7856 13 7 2.0197 -0.6925 -1.1994 14 6 1.8162 0.1275 -2.4005 15 6 2.4663 -0.5584 -3.6042 16 6 1.8402 -1.9424 -3.7964 17 6 2.0234 -2.7593 -2.5143 18 6 1.3481 -4.1226 -2.6764 19 6 3.4596 -2.9492 -2.2537 20 7 4.5681 -3.0959 -2.0524 21 6 1.3862 -2.0096 -1.3422 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6256 -0.2454 2.1381 26 1 1.7295 -1.7656 1.2181 27 1 6.0414 -1.7230 3.0085 28 1 0.7481 0.2457 -2.5829 29 1 2.2698 1.1076 -2.2522 30 1 3.5367 -0.6643 -3.4283 31 1 2.3017 0.0428 -4.4984 32 1 2.3304 -2.4518 -4.6260 33 1 0.7771 -1.8356 -4.0114 34 1 0.2851 -3.9807 -2.8711 35 1 1.8024 -4.6560 -3.5113 36 1 1.4759 -4.7022 -1.7622 37 1 1.5274 -2.5818 -0.4253 38 1 0.3201 -1.8814 -1.5296 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591026519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:34 Heat of formation + Delta-G solvation = 19.485620 kcal Electronic energy + Delta-G solvation = -17772.653988 eV Core-core repulsion = 15228.733741 eV Total energy + Delta-G solvation = -2543.920247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.70908 -36.36247 -34.55032 -32.69604 -32.00566 -29.90354 -27.80683 -26.63783 -24.37159 -22.78435 -22.48657 -20.61390 -19.04111 -16.68946 -16.43338 -15.26751 -14.75466 -14.52649 -14.28943 -13.84363 -13.55595 -13.27360 -13.06004 -12.53794 -12.49243 -12.17483 -12.09728 -11.90756 -11.85128 -11.51266 -11.41035 -11.27725 -10.96195 -10.80363 -10.60762 -10.35284 -10.20903 -9.96169 -9.67128 -9.51343 -8.98737 -8.36704 -7.54836 -5.84821 -3.78798 3.37265 3.44898 3.46072 3.47966 3.53650 4.22821 4.47319 4.57807 4.82330 4.94679 5.13773 5.22328 5.47637 5.48965 5.58307 5.60035 5.65901 5.72109 5.77625 5.78043 5.90494 5.92099 5.93244 5.99562 6.14955 6.17642 6.31208 6.40511 6.49569 6.51965 6.77113 7.13066 7.30376 7.73742 7.81274 7.98429 8.33859 8.76176 9.27297 9.77521 11.29428 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.009638 C = 0.008518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.462986 B = 2904.382193 C = 3286.188052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.098 3.902 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.489 4.489 6 H 0.076 0.924 7 C 0.063 3.937 8 N -0.904 5.904 9 Si 0.869 3.131 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.510 5.510 14 C 0.054 3.946 15 C -0.122 4.122 16 C -0.105 4.105 17 C 0.041 3.959 18 C -0.140 4.140 19 C 0.221 3.779 20 N -0.421 5.421 21 C 0.066 3.934 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.259 0.741 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 -1.398 -11.835 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.010 4.010 3 H 0.094 0.906 4 C -0.042 4.042 5 C -0.527 4.527 6 H 0.094 0.906 7 C -0.137 4.137 8 N -0.544 5.544 9 Si 0.697 3.303 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.233 5.233 14 C -0.074 4.074 15 C -0.159 4.159 16 C -0.144 4.144 17 C 0.037 3.963 18 C -0.199 4.199 19 C -0.098 4.098 20 N -0.096 5.096 21 C -0.063 4.063 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.437 -1.745 -11.361 16.215 hybrid contribution -1.596 -0.388 0.710 1.790 sum -13.033 -2.133 -10.650 16.966 Atomic orbital electron populations 1.22563 0.99492 1.01410 1.01097 1.21683 0.89945 0.98436 0.90958 0.90557 1.19662 0.98112 0.94801 0.91632 1.20964 0.89015 1.30188 1.12514 0.90596 1.24999 0.94608 0.96546 0.97505 1.69914 1.06092 1.43934 1.34433 0.86954 0.80358 0.81150 0.81794 1.20677 1.21637 1.19301 1.61938 1.57778 1.01866 1.01761 1.22094 0.97642 0.97185 0.90517 1.21643 1.01440 0.95381 0.97484 1.21658 1.01624 0.95829 0.95262 1.18310 0.83813 0.96900 0.97303 1.21832 1.00639 0.94451 1.02954 1.28418 0.94308 0.93268 0.93793 1.81188 1.12666 1.08516 1.07183 1.22157 0.95087 0.91699 0.97350 0.92455 0.93646 0.92761 0.96570 0.97126 0.93157 0.95375 0.90921 0.91019 0.91487 0.91323 0.90545 0.90918 0.91746 0.91525 0.89339 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.76 8.40 37.16 0.31 -2.45 16 2 C 0.10 1.84 2.26 -67.71 -0.15 1.68 16 3 H 0.08 1.49 7.93 -51.93 -0.41 1.08 16 4 C 0.00 -0.11 3.47 -27.88 -0.10 -0.21 16 5 C -0.49 -14.08 9.35 -34.44 -0.32 -14.40 16 6 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -29.29 13.96 55.43 0.77 -28.51 16 9 Si 0.87 22.41 27.37 -169.99 -4.65 17.76 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 12 H -0.27 -6.52 6.69 56.52 0.38 -6.15 16 13 N -0.51 -9.10 3.85 -226.69 -0.87 -9.98 16 14 C 0.05 0.77 5.18 -3.83 -0.02 0.75 16 15 C -0.12 -1.56 5.83 -26.65 -0.16 -1.72 16 16 C -0.11 -1.17 4.77 -26.61 -0.13 -1.29 16 17 C 0.04 0.56 0.72 -157.22 -0.11 0.45 16 18 C -0.14 -1.45 8.44 37.16 0.31 -1.14 16 19 C 0.22 4.16 12.34 -20.76 -0.26 3.90 16 20 N -0.42 -9.57 18.54 42.16 0.78 -8.79 16 21 C 0.07 1.03 3.16 -3.84 -0.01 1.01 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.58 6.93 -51.93 -0.36 0.22 16 24 H 0.05 0.76 6.45 -51.93 -0.33 0.43 16 25 H 0.02 0.38 7.55 -51.93 -0.39 -0.01 16 26 H 0.01 0.25 5.54 -51.93 -0.29 -0.04 16 27 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 28 H 0.03 0.35 6.98 -51.93 -0.36 -0.01 16 29 H 0.07 1.08 7.98 -51.93 -0.41 0.66 16 30 H 0.07 1.14 7.36 -51.93 -0.38 0.76 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.59 6.28 -51.93 -0.33 1.26 16 38 H 0.05 0.58 6.57 -51.93 -0.34 0.24 16 LS Contribution 296.87 15.07 4.47 4.47 Total: -1.00 -34.25 296.87 -6.37 -40.63 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -6.15 Total: -3.99 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.73 Total: -11.59 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.68 Total: -47.28 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.65 Total: 17.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.25 -6.37 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591026519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.114 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds